Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0217 | ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGAGCGGACTAAATATATTGAAGTGAATTGTCATTCATTTGTGAGAAAATACAAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATCGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAAGACAACCGTTCTTGAGTCTCAAGACAGACATTCTCTCCTATGGAATCAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCATTAGAAAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAGTGTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCAGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTGGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCGCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAATGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTCTATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCTCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTTTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACTCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTCTGCGGTTACCCATGGCGGCCATACTTCTGGAAGCCTCAATCAATGGCGGAACCCTATACTGGAAGAGCGCGATTGA | 2967 | 42.67 | MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEERTKYIEVNCHSFVRKYKGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSKTTVLESQDRHSLLWNQKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLENHDVNSNYNIPFLKQEHGNSFEVDTSVIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEENELPKGSAEVEAEMTVNCISNGNLSSAEDSIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNSAALTSLADVSGMEDSAVTHGGHTSGSLNQWRNPILEERD | 988 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 2306524 | 2325355 | + | CcPI632755_06g002170.1 | Cco06g0217 | 180817 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0217 | 988 | Gene3D | Immunoglobulins | 401 | 494 | IPR013783 | - | |
Cco06g0217 | 988 | Pfam | IQ calmodulin-binding motif | 812 | 830 | IPR000048 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | Pfam | IQ calmodulin-binding motif | 835 | 854 | IPR000048 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | MobiDBLite | consensus disorder prediction | 151 | 196 | - | - | |
Cco06g0217 | 988 | ProSiteProfiles | Ankyrin repeat profile. | 635 | 667 | IPR002110 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | ProSiteProfiles | Ankyrin repeat region circular profile. | 635 | 661 | - | - | |
Cco06g0217 | 988 | CDD | IPT | 407 | 491 | - | - | |
Cco06g0217 | 988 | SMART | CG_1_2 | 11 | 129 | IPR005559 | GO:0003677(InterPro) | |
Cco06g0217 | 988 | MobiDBLite | consensus disorder prediction | 963 | 988 | - | - | |
Cco06g0217 | 988 | MobiDBLite | consensus disorder prediction | 966 | 980 | - | - | |
Cco06g0217 | 988 | Pfam | Ankyrin repeats (3 copies) | 608 | 694 | IPR002110 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | FunFam | Calmodulin-binding transcription activator 2 | 809 | 857 | - | - | |
Cco06g0217 | 988 | ProSiteProfiles | IQ motif profile. | 810 | 839 | - | - | |
Cco06g0217 | 988 | ProSiteProfiles | IQ motif profile. | 753 | 781 | - | - | |
Cco06g0217 | 988 | MobiDBLite | consensus disorder prediction | 149 | 196 | - | - | |
Cco06g0217 | 988 | Gene3D | - | 572 | 704 | IPR036770 | - | |
Cco06g0217 | 988 | Gene3D | - | 810 | 857 | - | - | |
Cco06g0217 | 988 | SMART | iq_5 | 752 | 774 | IPR000048 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | SMART | iq_5 | 832 | 854 | IPR000048 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | SMART | iq_5 | 809 | 831 | IPR000048 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | ProSiteProfiles | CG-1 DNA-binding domain profile. | 8 | 134 | IPR005559 | GO:0003677(InterPro) | |
Cco06g0217 | 988 | SUPERFAMILY | E set domains | 407 | 490 | IPR014756 | - | |
Cco06g0217 | 988 | PANTHER | CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA | 6 | 939 | - | GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER) | |
Cco06g0217 | 988 | SUPERFAMILY | Ankyrin repeat | 605 | 696 | IPR036770 | - | |
Cco06g0217 | 988 | Pfam | CG-1 domain | 14 | 127 | IPR005559 | GO:0003677(InterPro) | |
Cco06g0217 | 988 | ProSiteProfiles | IQ motif profile. | 833 | 857 | - | - | |
Cco06g0217 | 988 | SMART | ANK_2a | 635 | 664 | IPR002110 | GO:0005515(InterPro) | |
Cco06g0217 | 988 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 756 | 861 | IPR027417 | - | |
Cco06g0217 | 988 | Pfam | IPT/TIG domain | 407 | 480 | IPR002909 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0217 | Cco-Chr6:2306524 | Cco10g0854 | Cco-Chr10:17912168 | 3.20E-140 | dispersed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59443 | PF03859 | CG-1 | 5.50E-48 | No_clan | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0217 | K21596 | - | csv:101222798 | 1636.31 |