Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0217 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGAGCGGACTAAATATATTGAAGTGAATTGTCATTCATTTGTGAGAAAATACAAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATCGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAAGACAACCGTTCTTGAGTCTCAAGACAGACATTCTCTCCTATGGAATCAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCATTAGAAAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAGTGTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCAGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTGGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCGCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAATGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTCTATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCTCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTTTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACTCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTCTGCGGTTACCCATGGCGGCCATACTTCTGGAAGCCTCAATCAATGGCGGAACCCTATACTGGAAGAGCGCGATTGA 2967 42.67 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEERTKYIEVNCHSFVRKYKGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSKTTVLESQDRHSLLWNQKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLENHDVNSNYNIPFLKQEHGNSFEVDTSVIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEENELPKGSAEVEAEMTVNCISNGNLSSAEDSIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNSAALTSLADVSGMEDSAVTHGGHTSGSLNQWRNPILEERD 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2306524 2325355 + CcPI632755_06g002170.1 Cco06g0217 180817

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0217 988 Gene3D Immunoglobulins 401 494 IPR013783 -
Cco06g0217 988 Pfam IQ calmodulin-binding motif 812 830 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 MobiDBLite consensus disorder prediction 151 196 - -
Cco06g0217 988 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 ProSiteProfiles Ankyrin repeat region circular profile. 635 661 - -
Cco06g0217 988 CDD IPT 407 491 - -
Cco06g0217 988 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 MobiDBLite consensus disorder prediction 963 988 - -
Cco06g0217 988 MobiDBLite consensus disorder prediction 966 980 - -
Cco06g0217 988 Pfam Ankyrin repeats (3 copies) 608 694 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 FunFam Calmodulin-binding transcription activator 2 809 857 - -
Cco06g0217 988 ProSiteProfiles IQ motif profile. 810 839 - -
Cco06g0217 988 ProSiteProfiles IQ motif profile. 753 781 - -
Cco06g0217 988 MobiDBLite consensus disorder prediction 149 196 - -
Cco06g0217 988 Gene3D - 572 704 IPR036770 -
Cco06g0217 988 Gene3D - 810 857 - -
Cco06g0217 988 SMART iq_5 752 774 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 SMART iq_5 832 854 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 SMART iq_5 809 831 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 SUPERFAMILY E set domains 407 490 IPR014756 -
Cco06g0217 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 939 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco06g0217 988 SUPERFAMILY Ankyrin repeat 605 696 IPR036770 -
Cco06g0217 988 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 ProSiteProfiles IQ motif profile. 833 857 - -
Cco06g0217 988 SMART ANK_2a 635 664 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 861 IPR027417 -
Cco06g0217 988 Pfam IPT/TIG domain 407 480 IPR002909 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0217 K21596 - - csv:101222798 1636.31
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0217 Cco-Chr6:2306524 Cco10g0854 Cco-Chr10:17912168 3.20E-140 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi1g1270 . . . . . . . . . . . . . . . . . . . . . . . . Cla06g00202 Cam06g0008 Cec06g0221 Cco06g0217 Clacu06g0217 Cmu06g0212 Cre06g0984 . . . . . . Chy11g01789 Cme11g02321 . Blo12g00279 . . . . . . Sed09g0385 . . . . . . Cpe17g01072 . Bhi12g02457 Tan06g1519 Cmetu11g2536 . Hepe03g1109 . . . . . . . . . Lsi09g01722 . . .
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g1722 . 1 1101 CAMTA Transcription Factor Family AT5G64220 53.8 2.5e-276 948.7
Cco06g0217 . 6 942 CAMTA Transcription Factor Family AT1G67310 51.7 1.5e-252 869.8
Cco06g0469 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.9e-258 889.0
Cco06g0469 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.5 4.9e-191 665.2
Cco09g1722 . 1 1101 CAMTA Transcription Factor Family AT5G64220 53.8 2.5e-276 948.7
Cco06g0217 . 6 942 CAMTA Transcription Factor Family AT1G67310 51.7 1.5e-252 869.8
Cco06g0469 . 11 631 CAMTA Transcription Factor Family AT4G16150 53.5 4.9e-191 665.2
Cco06g0469 . 34 906 CAMTA Transcription Factor Family AT3G16940 55.0 1.9e-258 889.0
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0004085 2 3 2 1 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 1 1 43
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59443 PF03859 CG-1 5.50E-48 No_clan Cco TF