Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0217 ATGATGAACGCCGGATATGATATTAATGATCTTTATCGAGAAGCACAAACCCGTTGGCTGAAGCCTCCAGAAGTGTTCTTTATTTTACAGAATCATGAGAATTATCAGCTGACTGAGGAGGCTCCTAAACAGCCAACTAGTGGTTCCTTGTTTCTTTTTAACAAGAGAGTACTCCGTTTCTTCCGTAAAGATGGTCATAGCTGGAGGAAGAAAAGGGACGGAAGAACTGTTGGAGAAGCACATGAACGACTTAAGGTTGGAAATGCTGAAGCGTTAAATTGCTATTATGCACATGGAGAGCACAACCCCAATTTCCAGAGACGTAGCTATTGGATGCTGGATCAGTCATGTGATCACATTGTTCTTGTACACTACAGAGATATCAGTGAGGAGCGGACTAAATATATTGAAGTGAATTGTCATTCATTTGTGAGAAAATACAAGGGAAGGTCTGGGACGGAATCGGGTTCTACTTCCGGTTCCTATTCGTCCCAAAATCTTGCTTCAGAATGTCAACAGACTTCATTGAGTCCAGGGTCTGTAGAAGTTACTTCTGACACTGGCAACCTTACTATTGGGTCAAATGGCATGGATGGGCAGTATGAAATATCCGAATTAAAAAGTTCAAACGATCGTGATGTTTCTCAAGCTTTGAGAAGGATAGAGGAGCAATTAAGTTTGAATGAAGACAGCTTGAAAGACATCGGTCCATTTTATGGTCACGAGGAAGGTTCAAATTCTAACCTTATAGACTACTATGAGATGTCCAATGAGGATCAGTTTTCAGTGCTCCAGCATTCAGAAAATACTGTCCATGATAATACTTGTACGTCTGAGATGCAAGATGCTAATGGAAAACATCACCATTACAATATGGCACACGAGTTTATATTCAGTGGTGAAGGAACTCAACCATGGGGTGATGCACTTGATTCTAGTAAGACAACCGTTCTTGAGTCTCAAGACAGACATTCTCTCCTATGGAATCAAAAAGAAAATCCATCATCACCTTCGACTGTTGACAATGAACAATGCAACTGGCTGTACAGCAGAGGAAAAACTTTTCCTATGCTAGGAGGCTGCACGTCTACAGAATATTCTTCACCATTAGAAAATCATGATGTTAATTCCAACTACAACATACCATTTCTTAAACAAGAACATGGAAATTCTTTTGAGGTTGATACCAGTGTAATTGTTGCACAAGTGCAGAAATTTACAATCCACCAAATAGTACCAGAGCAGGGTCATGCCACCGAGAGTACCAAGGTCATCATTATTGGATCTTTTCTATGTGATCCTTCAGAATCTTCATGGGCTTGTATGTTTGGAGATATTGAAGTTCCTCTTCAGATTGTTCAGAACGGGGTACTTTGTTGCGAAGCACCTCCTCACCTCCCTGGGAAGGTTGCTCTCTGCATTACATCTGGCAATCAGGAACCCTGCAGTGAAGTCAGAGAGTTCGAATATAAAATGAATGTTTGCACTCATTGCCAGTCACATTCGACTGGAGCTACGAAGAGTCCAGAGGAGCTGTTATTACTTGTCAGGCTTGTGCAATTGCTGCTCTCTGACTCATCAGTGCAGAAATCTGACAAGTTGGATTCTGAATTTTGGAGCAATAATTTGAAAGCTGGTGATGATCAATGGAGTTCTTTGATAGAGGCGCTACTAGTTGGTAGTGAAACTCCTTCTGGTGCCATTGATTGGCTTCTTCAAGAGTTGCTAAAAGACAAGTTGCGACTCTGGCTTTCTTCTCAACAGAAAGATAGGCACGATCTAGCAGGCTGTTCCTTGTCCAAGAAAGAACAAGGCATTATACACATGATTGCCGGCTTGGGCTATGTGTGGGCACTAAACCCAATTCTCGGTTGTGGAGTAAATATAAATTTCCGTGACATTAATGGATGGACTGCTCTACACTGGGCAGCACGATTTGGAAGGGAAAAAATGGTTGCTGCACTAATAGCCTCTGGAGCATCAGCTGGCGCTGTGACTGATCCTAGTTCACAAGAACCAGATGGTAAAAGTGCAGCGTCTATCGCAGACATCCATGGACACAAGGGGCTTGCTGGTTATTTATCAGAGGTTGCACTTACTAGTCATCTTTCATCCCTCACATTTGAAGAAAATGAGCTTCCTAAAGGCTCTGCTGAGGTAGAAGCAGAAATGACGGTAAATTGCATTTCAAATGGGAACCTCTCTTCCGCGGAGGACTCTATCCCTCTAAAAAATACGTTAGCTGCAGTAAGGAATGCTGCTCAGGCAGCAGCTCGTATTCAATCTGCTTTCCGTGCACATTCTTTCAGAAAGCGACAGCAGAAAGAGGCAGCTTTTGCAGCTTGTATAGATGAGTATGGAATCGATCCAAATGACATTCAGGGGCTTTTAGCTATGTCAAAGTTGAATTTTTCTAATCGGCGTGATTACAATGCTGCTGCATTATCTATACAAAAGAAGTATAGAGGTTGGAAAGGTCGTAAAGAGTTCTTATCGCTACGTCAGAAAGTCGTGAAGATACAGGCACATGTGAGGGGTTATCAAGTTAGAAAGCATTACAAAATAATTTGTTGGGCTGTCGGAATTCTTGATAAAGTTGTATTGCGTTGGAGAAGGAAAGGAGTTGGTTTGAGAGGGTTTCGTAGCGAGGTAGGATCCATTGATGAAAGTGAAGATGATGATATTATAACGGTGTTCCGCAAACAAAAGGTGGAAGGAACCATTGATGAGGCTGTTTCACGAGTGCTATCCATGGTTGACTCTCCGGATGCTCGTCAGCAATATCATCGTATGCTTCAAGGATTTCGAGAAGCCAAGGCTGAACTTGATGGTGCCAGTAACAACTCTGCAGCATTGACTTCTCTCGCCGATGTTTCTGGAATGGAAGATTCTGCGGTTACCCATGGCGGCCATACTTCTGGAAGCCTCAATCAATGGCGGAACCCTATACTGGAAGAGCGCGATTGA 2967 42.67 MMNAGYDINDLYREAQTRWLKPPEVFFILQNHENYQLTEEAPKQPTSGSLFLFNKRVLRFFRKDGHSWRKKRDGRTVGEAHERLKVGNAEALNCYYAHGEHNPNFQRRSYWMLDQSCDHIVLVHYRDISEERTKYIEVNCHSFVRKYKGRSGTESGSTSGSYSSQNLASECQQTSLSPGSVEVTSDTGNLTIGSNGMDGQYEISELKSSNDRDVSQALRRIEEQLSLNEDSLKDIGPFYGHEEGSNSNLIDYYEMSNEDQFSVLQHSENTVHDNTCTSEMQDANGKHHHYNMAHEFIFSGEGTQPWGDALDSSKTTVLESQDRHSLLWNQKENPSSPSTVDNEQCNWLYSRGKTFPMLGGCTSTEYSSPLENHDVNSNYNIPFLKQEHGNSFEVDTSVIVAQVQKFTIHQIVPEQGHATESTKVIIIGSFLCDPSESSWACMFGDIEVPLQIVQNGVLCCEAPPHLPGKVALCITSGNQEPCSEVREFEYKMNVCTHCQSHSTGATKSPEELLLLVRLVQLLLSDSSVQKSDKLDSEFWSNNLKAGDDQWSSLIEALLVGSETPSGAIDWLLQELLKDKLRLWLSSQQKDRHDLAGCSLSKKEQGIIHMIAGLGYVWALNPILGCGVNINFRDINGWTALHWAARFGREKMVAALIASGASAGAVTDPSSQEPDGKSAASIADIHGHKGLAGYLSEVALTSHLSSLTFEENELPKGSAEVEAEMTVNCISNGNLSSAEDSIPLKNTLAAVRNAAQAAARIQSAFRAHSFRKRQQKEAAFAACIDEYGIDPNDIQGLLAMSKLNFSNRRDYNAAALSIQKKYRGWKGRKEFLSLRQKVVKIQAHVRGYQVRKHYKIICWAVGILDKVVLRWRRKGVGLRGFRSEVGSIDESEDDDIITVFRKQKVEGTIDEAVSRVLSMVDSPDARQQYHRMLQGFREAKAELDGASNNSAALTSLADVSGMEDSAVTHGGHTSGSLNQWRNPILEERD 988
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2306524 2325355 + CcPI632755_06g002170.1 Cco06g0217 180817
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0217 988 Gene3D Immunoglobulins 401 494 IPR013783 -
Cco06g0217 988 Pfam IQ calmodulin-binding motif 812 830 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 Pfam IQ calmodulin-binding motif 835 854 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 MobiDBLite consensus disorder prediction 151 196 - -
Cco06g0217 988 ProSiteProfiles Ankyrin repeat profile. 635 667 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 ProSiteProfiles Ankyrin repeat region circular profile. 635 661 - -
Cco06g0217 988 CDD IPT 407 491 - -
Cco06g0217 988 SMART CG_1_2 11 129 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 MobiDBLite consensus disorder prediction 963 988 - -
Cco06g0217 988 MobiDBLite consensus disorder prediction 966 980 - -
Cco06g0217 988 Pfam Ankyrin repeats (3 copies) 608 694 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 FunFam Calmodulin-binding transcription activator 2 809 857 - -
Cco06g0217 988 ProSiteProfiles IQ motif profile. 810 839 - -
Cco06g0217 988 ProSiteProfiles IQ motif profile. 753 781 - -
Cco06g0217 988 MobiDBLite consensus disorder prediction 149 196 - -
Cco06g0217 988 Gene3D - 572 704 IPR036770 -
Cco06g0217 988 Gene3D - 810 857 - -
Cco06g0217 988 SMART iq_5 752 774 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 SMART iq_5 832 854 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 SMART iq_5 809 831 IPR000048 GO:0005515(InterPro)
Cco06g0217 988 ProSiteProfiles CG-1 DNA-binding domain profile. 8 134 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 SUPERFAMILY E set domains 407 490 IPR014756 -
Cco06g0217 988 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 6 939 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco06g0217 988 SUPERFAMILY Ankyrin repeat 605 696 IPR036770 -
Cco06g0217 988 Pfam CG-1 domain 14 127 IPR005559 GO:0003677(InterPro)
Cco06g0217 988 ProSiteProfiles IQ motif profile. 833 857 - -
Cco06g0217 988 SMART ANK_2a 635 664 IPR002110 GO:0005515(InterPro)
Cco06g0217 988 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 756 861 IPR027417 -
Cco06g0217 988 Pfam IPT/TIG domain 407 480 IPR002909 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0217 Cco-Chr6:2306524 Cco10g0854 Cco-Chr10:17912168 3.20E-140 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59443 PF03859 CG-1 5.50E-48 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0217 K21596 - csv:101222798 1636.31