Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0219 ATGAGTTCATTCTTTGTTGGGTTTTCTTCTTCTTCTTCTTCGGCTGCAACTTCCACTGCTATCTTTAATCCTTTCAATATCTTTTTGCTCTATAGATCTCTGAAGATTTCTTCCATGAACTGGTTCATTAATGGTGGAGTTATGGAAACGAAGGCTGGTTTGCTTGGTGGGGGTGGAAAGCTATGGCTTCAATTGTGGGAAACTGTCATTGGAAATTGTTGCAAGATGCATCATCAGTATTACCAGTATATTGGATCCAAGAAAGTTGGAAAAACATGGTGGAGAAGGCTTTTGGTGGCTTGGGTTTTTAGCTCTACTCTTGCTTCTTTATGGATCTTCCATTACATGAGCTCCCAAGCTACAGAGAAGAGGAAAGAAGCCTTGGGAAGCATGTGTGATGAAAGGGCTAGAATGCTTCAAGATCAGTTTAATGTCAGTATGAATCATATTCAGGCAATGTCCATCCTCATCTCCACCTTCCATCATGGCAAAAACCCATCTGCTATAGATCAGAGGACGTTTGCGAGGTACACGGAAAGAACTGCTTTTGAGAGGCCTCTTACCAGTGGTGTGGCATATGCAGTAAGGGTGCTCCATTCTGAAAGAGAACATTTTGAGAAGCAACAGGGCTGGACAATTAAAAGGATGGACAAAATCGAACAAAGTCCGGTTCACGAAGATGACTATGCTCCAGAAGATCTGGAGCCATCACCCACCCAAGACGAATATGCTCCTGTAATCTTCGCACAGGATACAATTTCTCATGTCGTTTCTCTCGATATGCTGTCGGGAGTGGAAGACCGTAAGAATGTATTACGTGCTAGATCATCAGGAAAGGGAGTCTTAACTGCTCCATTCAGGTTAATCAAAACAAATCGTCTAGGGGTCATACTTACATTTGCGGTCTACAAAAGAGATCTTCCCTCAAATGCCACTCCAAATGAGAGGATTCAAGCTACAGATGGGTATCTTGGCGGAGTTTTTGATATCGAGTCTCTGGTGGAGAAGTTACTTCAACAGCTTGCAAGCAACCAAACCATCCTAGTGAATGTTTATGATACCACTAACCAATCACATCCAATCAGTATGTATGGTAAAGATGTATCAGTTGATGGGTTGCAGCATGTTAGCCCCCTTAACTTTGGGGATCCTGATAGGAAGCATGAGATGCAATGCAGATTCAAGCAAAAACAACCTTGGCCATGGCTGGCAATGACAACTTCAATTGGCATACTCATTATTGCATTGCTTGTGGGGTATATATTCCATGCAACGTTGAACCGAATTGCCAAAGTGGAGGATGATTATCATGAGATGATGGTACTCAAGAAACGGGCAGAAGATGCTGATATTGCCAAATCCCAGTTCCTTGCAACTGTTTCCCATGAGATCAGAACCCCAATGAATGGTGTTCTAGGAATGTTGCATTTGCTTATGGACACTGACTTAGATGTGACTCAACAAGATTACGTTAAAACTGCACAAGACAGTGGAAAAGCTTTGGTATCATTGATAAACGAGGTTTTGGATCAGGCAAAAATTGAATCTGGAAAGCTTGAGCTTGAAGCTATACCTTTCAATCTGCGAGCAATTTTGGATGATATTTTATCACTCTTCTCTGGGAAATCTCAAGAAAAAGGACTGGAGCTGGCAGTTTACATTTCAGATAGTGTTCCCGAGACGCTTATTGGTGATCCTGGAAGGTTTAGGCAAATCATCACTAATCTTGTGGGAAACTCAATCAAGTTCACAGAGAAAGGGCACATATTTGTCACTGTTAATCTCGTCAAGGAGGTTATTGAATCAATTGATCTAGAGATCGAGTCATCAACAAATAGCACCTTGAGTGGCTATCCTATTGCGAATAGACGTCTCAGCTGGGCAGGATTTCGAACATGCAGTCAAGAGGGACCCACTGCTTGTCATTTCATGCCATCTCCACCAGACCTTATTAACCTCATGGTATCCGTGGAAGATACGGGTGTTGGTATTCCTCTAGAAGCCCAATCACGCATTTTCACTCCCTTCATGCAGGTTCGACCATCCATCTCTAGAACTCATGGGGGAACAGGTATCGGGCTGAGTATTAGCAAATGTTTGGTTGGCCTCATGAAGGGGGAGATTGGTTTTGTGAGTGTACCTAAGATTGGCTCTACCTTCACATTCACTGCGGTTTTCACAAACGGATCTTCCAATTCGAGTGAGTATAACAAAACCCAACAAATTAAGAACACTTCCATCACTGCAACCTCAGAATTTAAGGGTATGAGAGCATTAGTTGTGGACCATCAACCTATTCGAGCCAAAGTATCAAGATATCATATCCAACGACTTGGAATAAATGTCGAAGTCTTATCTGACTTGAATCAATGTCTGTCTACCACGACTATTAGTGGTTCGACTATCAATATGATTTTTGTTGAGCAGAAACTTTGGGATCAGGATACGAGCGCATCAGATCATTTTATCAAAAACTTGAGAAATTCTTATGCGGTTCCTCCCAAACTATTTCTTCTTACTAGCTCCATTAGTTCTTCAAAAACTAGCACTATAATTTCTGATGCATTCACTCCCACTGTCATCTTAAAGCCCTTGAGGGCAGGCATGCTCGCTGCCTCTCTACACCGAGTCATGGGTGTGGGGATCAAGGTTAATCCTCGCAACGGAGAGCTTCCTGTTCTCTCACTCCGTAGTTTACTTCTTGGTCGAAAAATTCTGGTAATAGATGACAATAAGGTGAATCGTATAGTCGCTGCTGGTGCTCTACAGCGGTATGGAGCTGATGTAGTATGTGAAAACAGTGGACGAGATGCAATCCGACTGCTTACGCCACCCCATCATTTTGATGCATGTTTCATGGATATTCAGATGCCAGAAATGGACGGCTTTGAAGCTACAAGAAGAATTCGGGAAATCGAACATCGGATCAATGATGGTATCCAAGTTGGAGAACTATCAAAAGAAGCATACGAGAATACATGTTATTGGCGCGTTCCCATCTTGGCCATGACTGCAGACGTAATCCAGGCCACGCATGAGGAATGCCTTCGGTGTGGGATGGATGGTCAGGCATGTACAGCATGCTTAAAAGGGTGTAAATTACCTCCGATCGAAGGTGATCGAGTTCTTGGATTGCTTCATATTATACCAGGCAAGCCTAAATTTTGTGGAAGAGTGTAA 3180 42.8 MSSFFVGFSSSSSSAATSTAIFNPFNIFLLYRSLKISSMNWFINGGVMETKAGLLGGGGKLWLQLWETVIGNCCKMHHQYYQYIGSKKVGKTWWRRLLVAWVFSSTLASLWIFHYMSSQATEKRKEALGSMCDERARMLQDQFNVSMNHIQAMSILISTFHHGKNPSAIDQRTFARYTERTAFERPLTSGVAYAVRVLHSEREHFEKQQGWTIKRMDKIEQSPVHEDDYAPEDLEPSPTQDEYAPVIFAQDTISHVVSLDMLSGVEDRKNVLRARSSGKGVLTAPFRLIKTNRLGVILTFAVYKRDLPSNATPNERIQATDGYLGGVFDIESLVEKLLQQLASNQTILVNVYDTTNQSHPISMYGKDVSVDGLQHVSPLNFGDPDRKHEMQCRFKQKQPWPWLAMTTSIGILIIALLVGYIFHATLNRIAKVEDDYHEMMVLKKRAEDADIAKSQFLATVSHEIRTPMNGVLGMLHLLMDTDLDVTQQDYVKTAQDSGKALVSLINEVLDQAKIESGKLELEAIPFNLRAILDDILSLFSGKSQEKGLELAVYISDSVPETLIGDPGRFRQIITNLVGNSIKFTEKGHIFVTVNLVKEVIESIDLEIESSTNSTLSGYPIANRRLSWAGFRTCSQEGPTACHFMPSPPDLINLMVSVEDTGVGIPLEAQSRIFTPFMQVRPSISRTHGGTGIGLSISKCLVGLMKGEIGFVSVPKIGSTFTFTAVFTNGSSNSSEYNKTQQIKNTSITATSEFKGMRALVVDHQPIRAKVSRYHIQRLGINVEVLSDLNQCLSTTTISGSTINMIFVEQKLWDQDTSASDHFIKNLRNSYAVPPKLFLLTSSISSSKTSTIISDAFTPTVILKPLRAGMLAASLHRVMGVGIKVNPRNGELPVLSLRSLLLGRKILVIDDNKVNRIVAAGALQRYGADVVCENSGRDAIRLLTPPHHFDACFMDIQMPEMDGFEATRRIREIEHRINDGIQVGELSKEAYENTCYWRVPILAMTADVIQATHEECLRCGMDGQACTACLKGCKLPPIEGDRVLGLLHIIPGKPKFCGRV 1059
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2329359 2335798 - CcPI632755_06g002190.1 Cco06g0219 180819
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0219 1059 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 506 723 IPR036890 -
Cco06g0219 1059 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 652 724 IPR003594 -
Cco06g0219 1059 CDD REC_hyHK_CKI1_RcsC-like 905 1022 - -
Cco06g0219 1059 SUPERFAMILY CheY-like 752 879 IPR011006 -
Cco06g0219 1059 Gene3D CHASE domain 169 398 IPR042240 -
Cco06g0219 1059 Gene3D - 516 730 IPR036890 -
Cco06g0219 1059 SMART CHASE_2 165 366 IPR006189 -
Cco06g0219 1059 Gene3D - 421 515 - -
Cco06g0219 1059 PANTHER TWO-COMPONENT HISTIDINE KINASE 91 1022 IPR050956 -
Cco06g0219 1059 SMART REC_2 903 1029 IPR001789 GO:0000160(InterPro)
Cco06g0219 1059 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 438 518 IPR036097 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco06g0219 1059 Pfam Response regulator receiver domain 905 975 IPR001789 GO:0000160(InterPro)
Cco06g0219 1059 SMART HisKA_10 452 517 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco06g0219 1059 Pfam His Kinase A (phospho-acceptor) domain 452 517 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco06g0219 1059 ProSiteProfiles CHASE domain profile. 165 391 IPR006189 -
Cco06g0219 1059 CDD HisKA 452 513 IPR003661 GO:0000155(InterPro)|GO:0007165(InterPro)
Cco06g0219 1059 Gene3D - 896 1025 - -
Cco06g0219 1059 SUPERFAMILY CheY-like 902 1022 IPR011006 -
Cco06g0219 1059 FunFam Histidine kinase 4 169 398 - -
Cco06g0219 1059 Gene3D - 116 168 - -
Cco06g0219 1059 ProSiteProfiles Response regulatory domain profile. 904 1045 IPR001789 GO:0000160(InterPro)
Cco06g0219 1059 FunFam Histidine kinase 4 424 515 - -
Cco06g0219 1059 PRINTS Bacterial sensor protein C-terminal signature 671 681 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco06g0219 1059 PRINTS Bacterial sensor protein C-terminal signature 688 706 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco06g0219 1059 PRINTS Bacterial sensor protein C-terminal signature 653 667 IPR004358 GO:0016310(InterPro)|GO:0016772(InterPro)
Cco06g0219 1059 SMART HKATPase_4 564 728 IPR003594 -
Cco06g0219 1059 ProSiteProfiles Response regulatory domain profile. 757 878 IPR001789 GO:0000160(InterPro)
Cco06g0219 1059 Pfam CHASE domain 168 364 IPR006189 -
Cco06g0219 1059 ProSiteProfiles Histidine kinase domain profile. 459 728 IPR005467 -
Cco06g0219 1059 CDD HATPase_EvgS-ArcB-TorS-like 569 726 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1037 Cco-Chr2:13603027 Cco06g0219 Cco-Chr6:2329359 5.00E-295 dispersed
Cco06g0219 Cco-Chr6:2329359 Cco11g0125 Cco-Chr11:1321306 4.70E-278 dispersed
Cco06g0219 Cco-Chr6:2329359 Cco02g0290 Cco-Chr2:2629916 2.60E-305 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59444 PF03924 CHASE 2.60E-37 CL0165 Cco TR
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0219 K14489 - csv:101216313 1846.25