Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0234 ATGGATCAATTTCTTACCAAAACAAAAGAAGATCAAGAAGATCAAGAAGAAGAAGATGAAGAAGAAGAAGAAGATCAAGATCAAGTTGTTGCATGCAATTTCTTCCCAAATTCTCACTCCCAATTAACTCAACAACAAGATCGAGATCAAGAAAGTGGAAATTATGAGTCTCAAAATGAAGATCAACCGATACTCATGGATTTATCCTTAAGAATGGAAAGCAATGGCTTTGATGGTGTTGTAGAAAGAGAACACATGTTTGATAAAGTTGTTACTCCAAGTGATGTTGGCAAATTAAACCGTTTAGTCATCCCAAAACAACATGCTGAAAAATACTTCCCTTTAGACTCATCCACCAACGACAAAGGCCTCATCTTGAACTTTGAAGACCGTCATGGAAAGCCTTGGCGCTTTCGTTACTCTTATTGGAATAGTAGCCAAAGCTATGTCATGACTAAAGGTTGGAGCCGTTTTGTTAAGGAGAAAAAACTCGACGCCGGCGACATCGTTTCCTTCCACCGTGCTCTCCCGAGTCATTCCACCAACGACAACCGTCTTTTTATCGACTGGCGTCGTCGTCGCCCTGACGCTCCTACCCCTCATCACAATCACCACCACCATTTCTCCAACCCTTTTCTCTTTCGTTGGGCTACTGCTCGGCACTTGCCACCACCACTGCCTCCTATGCGACGAACAACTCAACACCACCATCTTTACCCTAATTACGGGTTTGAAGTCCCTAATTTTGGGATGTCTAATAACAATAATTCTTCCATGTATTATTTTCGACCTATGTCGCCTTCTTCTTCTTCGTCTCTTTATAGGATGGGAAATGGGGATGAGATTGTTGTTAATAATCAAGGATGTTCTTCTATGGGGATTATTAACAAACCCGGCTCCGGCGCTGCGAAACGGTTGAGACTCTTTGGAGTGAATATGGAGTGTGCTTCACCGGACGGAGAAGGAGGAGGAGGAGAGGATTTGTCGAACAGTGGCGATTCGAGAAGAGGGAAAGAACCCTTGTCATTGAATTGGGATTTACATTAA 1047 42.88 MDQFLTKTKEDQEDQEEEDEEEEEDQDQVVACNFFPNSHSQLTQQQDRDQESGNYESQNEDQPILMDLSLRMESNGFDGVVEREHMFDKVVTPSDVGKLNRLVIPKQHAEKYFPLDSSTNDKGLILNFEDRHGKPWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFHRALPSHSTNDNRLFIDWRRRRPDAPTPHHNHHHHFSNPFLFRWATARHLPPPLPPMRRTTQHHHLYPNYGFEVPNFGMSNNNNSSMYYFRPMSPSSSSSLYRMGNGDEIVVNNQGCSSMGIINKPGSGAAKRLRLFGVNMECASPDGEGGGGEDLSNSGDSRRGKEPLSLNWDLH 348
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 2499661 2500707 + CcPI632755_06g002340.1 Cco06g0234 180834
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0234 348 MobiDBLite consensus disorder prediction 31 62 - -
Cco06g0234 348 CDD B3_DNA 85 174 IPR003340 GO:0003677(InterPro)
Cco06g0234 348 FunFam B3 domain-containing protein 80 205 - -
Cco06g0234 348 SUPERFAMILY DNA-binding pseudobarrel domain 84 175 IPR015300 -
Cco06g0234 348 SMART B3_2 87 194 IPR003340 GO:0003677(InterPro)
Cco06g0234 348 Gene3D - 80 208 IPR015300 -
Cco06g0234 348 PANTHER B3 DOMAIN-CONTAINING TRANSCRIPTION FACTOR ABI3 12 313 IPR044800 GO:0003700(InterPro)
Cco06g0234 348 Coils Coil 5 26 - -
Cco06g0234 348 ProSiteProfiles B3 DNA-binding domain profile. 87 194 IPR003340 GO:0003677(InterPro)
Cco06g0234 348 MobiDBLite consensus disorder prediction 331 348 - -
Cco06g0234 348 MobiDBLite consensus disorder prediction 12 28 - -
Cco06g0234 348 Pfam B3 DNA binding domain 87 193 IPR003340 GO:0003677(InterPro)
Cco06g0234 348 MobiDBLite consensus disorder prediction 1 62 - -
Cco06g0234 348 MobiDBLite consensus disorder prediction 316 348 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0234 Cco-Chr6:2499661 Cco07g0865 Cco-Chr7:20059607 2.20E-51 dispersed
Cco06g0234 Cco-Chr6:2499661 Cco01g0128 Cco-Chr1:1127062 6.90E-53 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59446 PF02362 B3 2.20E-28 CL0405 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0234 K09287 - csv:101221141 532.332