Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0276 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCACCGGCTCTGTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGTGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTGAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCAATCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACTCAATCACAAAGATCAAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCGTCCCCATCAAAATCTCGACCGGTCCAGCAAGTTCGGTCGGCGAGTCCCTGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACACTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACAGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1527 50.16 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARVAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTICVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSQSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPCYSREDRNQISHHTTSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3020822 3023137 + CcPI632755_06g002760.1 Cco06g0276 180876
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0276 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 148 IPR027417 -
Cco06g0276 508 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 MobiDBLite consensus disorder prediction 282 445 - -
Cco06g0276 508 Gene3D - 100 155 - -
Cco06g0276 508 ProSiteProfiles IQ motif profile. 103 131 - -
Cco06g0276 508 FunFam IQ-domain 11 102 153 - -
Cco06g0276 508 Pfam Protein of unknown function (DUF4005) 363 469 IPR025064 -
Cco06g0276 508 MobiDBLite consensus disorder prediction 303 368 - -
Cco06g0276 508 PANTHER IQ-DOMAIN 5-RELATED 9 437 - -
Cco06g0276 508 ProSiteProfiles IQ motif profile. 127 154 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 17 38 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 401 424 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 483 508 - -
Cco06g0276 508 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 MobiDBLite consensus disorder prediction 1 62 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0021 Cco-Chr5:242182 Cco06g0276 Cco-Chr6:3020822 1.10E-114 dispersed
Cco05g0950 Cco-Chr5:8313810 Cco06g0276 Cco-Chr6:3020822 9.70E-18 dispersed
Cco06g0276 Cco-Chr6:3020822 Cco09g0069 Cco-Chr9:604269 1.50E-16 dispersed
Cco06g0276 Cco-Chr6:3020822 Cco09g2240 Cco-Chr9:36699663 1.00E-28 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0276 - - - 0.0