Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0276 ATGGGGAAGAAAGGAGGTAGCTCATGGTTGACTGCCGTCAAAAGGGCTTTCAGATCTCCCACTAAAGATGATGATGAAAAGAGAAGAGAGAAACGCCGCTGGATTTTCAGAAAACCAACAAATCAGCCGCCGGAGCCACTCGCCGCCCACCAACCGCCGTCTAAGCCACCGGCTCTGTCCACTCATTCTGTAGCTTTAGAAGACCAGAAACATGCCCTTGCAGTGGCTGAAGCTGCCATGGTCGCCGCCAGAGTGGCTGCACAAGCCGTCCACCTCACCCGCCCTGCCCGTCCTGGATTGGATCGCCATCGCCTCGCCGCCATTGTGATTCAAACTGCCTTTAGAGGATATCTGGCAAGGAGGGCTCTACGGGCATTGAAGGGGTTGGTGAAGTTGCAGGCATTAGTGAGAGGACACAATGTGAGGAAGCAAGCAAAGACGACGCTGCAGTGTATGAAAGCATTAGTGAGAGTGCAGGAAAAAGTTCTCGATCACCGGATGCGACTTTCCCTCGAGGGTAGCCGACGGTCTACATTCAGCGACACCAACAGCGTGTATGAATCTCGCTATGCTCAAGACGTCTCCGAGAGGAAGACTATTTGTGTATCAAGAGAAGGAAGCAGCATTACGGAGGATTGGGATGAACGTGCTCACACAGTTGAAGAAGTAAAAGCAATGTTACAATATAGAAGAGATGCTGCTTTGAATCGTGACAACATTTTATCTCAATCCTTTTCTCAACAGATATGGAGGACTGGAAAGAGCCCATCAATAGGAAATCAAGCGGAGCTTGAAGAAGGACAAAAATGGCTCGACCAATGGATGGCGAAGAAGCCATGGGAGAATAGAGCAAGAGCTTCCACAGATAACAGACCACAGCCCCTTAAAACGCTCGAAATCGACACCTCTAGGCCCTACTCTTACTTATCTCCCAACAATCTCCACACAACGAATTATCAAACTCAATCACAAAGATCAAACTCGCTTTCCTCATCCTCCCCACTCCACAGAGCCCATCACCATCAGTTCTCCATCACCCCGTCCCCATCAAAATCTCGACCGGTCCAGCAAGTTCGGTCGGCGAGTCCCTGCTACAGCAGAGAAGATAGAAACCAAATCAGCCACCACACTACATCCCAAACACCAAGCTTGAGGACAAAACATCAACATCACAAATGGGGTAGTGGTGGTGGGACTTCAATGCCAAATTACATGGCAGCAACAGAGTCAGCCAAGGCACGAGTCCGGTCGCAAAGTGCGCCGAGGCAAAGGCCAGCAACACCCGAGAGGGAACGAGTTGGAACTGCGAGGAAGCGGCTATCTTTTCCAGTACCGCCGGATCCTTACAGTAGAATAGCAGGGTGCGGTGTTTATGGGAATAGCATGAAGAGCCCAAGTTTTAAGAGTGCTTGTGGAAGGTATGGTGGGTTGGAGGAACAGTCTAACTATTCTTCTTGCTATACAGAAAGCCATGGAGGAGAGGTTTCACCATCTTCAACCACTGACCTCAGAAGGTGGCTGAGATGA 1527 50.16 MGKKGGSSWLTAVKRAFRSPTKDDDEKRREKRRWIFRKPTNQPPEPLAAHQPPSKPPALSTHSVALEDQKHALAVAEAAMVAARVAAQAVHLTRPARPGLDRHRLAAIVIQTAFRGYLARRALRALKGLVKLQALVRGHNVRKQAKTTLQCMKALVRVQEKVLDHRMRLSLEGSRRSTFSDTNSVYESRYAQDVSERKTICVSREGSSITEDWDERAHTVEEVKAMLQYRRDAALNRDNILSQSFSQQIWRTGKSPSIGNQAELEEGQKWLDQWMAKKPWENRARASTDNRPQPLKTLEIDTSRPYSYLSPNNLHTTNYQTQSQRSNSLSSSSPLHRAHHHQFSITPSPSKSRPVQQVRSASPCYSREDRNQISHHTTSQTPSLRTKHQHHKWGSGGGTSMPNYMAATESAKARVRSQSAPRQRPATPERERVGTARKRLSFPVPPDPYSRIAGCGVYGNSMKSPSFKSACGRYGGLEEQSNYSSCYTESHGGEVSPSSTTDLRRWLR 508
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3020822 3023137 + CcPI632755_06g002760.1 Cco06g0276 180876

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0276 508 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 81 148 IPR027417 -
Cco06g0276 508 SMART iq_5 102 124 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 SMART iq_5 125 146 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 MobiDBLite consensus disorder prediction 282 445 - -
Cco06g0276 508 Gene3D - 100 155 - -
Cco06g0276 508 ProSiteProfiles IQ motif profile. 103 131 - -
Cco06g0276 508 FunFam IQ-domain 11 102 153 - -
Cco06g0276 508 Pfam Protein of unknown function (DUF4005) 363 469 IPR025064 -
Cco06g0276 508 MobiDBLite consensus disorder prediction 303 368 - -
Cco06g0276 508 PANTHER IQ-DOMAIN 5-RELATED 9 437 - -
Cco06g0276 508 ProSiteProfiles IQ motif profile. 127 154 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 17 38 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 401 424 - -
Cco06g0276 508 MobiDBLite consensus disorder prediction 483 508 - -
Cco06g0276 508 Pfam IQ calmodulin-binding motif 130 146 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 Pfam IQ calmodulin-binding motif 106 124 IPR000048 GO:0005515(InterPro)
Cco06g0276 508 MobiDBLite consensus disorder prediction 1 62 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0276 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0021 Cco-Chr5:242182 Cco06g0276 Cco-Chr6:3020822 1.10E-114 dispersed
Cco05g0950 Cco-Chr5:8313810 Cco06g0276 Cco-Chr6:3020822 9.70E-18 dispersed
Cco06g0276 Cco-Chr6:3020822 Cco09g0069 Cco-Chr9:604269 1.50E-16 dispersed
Cco06g0276 Cco-Chr6:3020822 Cco09g2240 Cco-Chr9:36699663 1.00E-28 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi15g624 . . . . . . Bma04g00927 . . Cmo17g00478 . . . . . . . . . . . . . . . . . . . . . . . Cone11ag0521 Cone18ag0985 . . . . . . . . . Bpe04g00965 . . . . . . Cma17g00507 . Car17g00469 . Cpe12g00436 . . . . . . . Cla06g00255 Cam06g0278 Cec06g0277 Cco06g0276 Clacu06g0268 Cmu06g0268 Cre06g1039 . . . Cme11g02263
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco09g2240 . 1 479 IQD Protein Family AT3G52290 52.9 4.8e-104 375.2
Cco05g2347 . 1768 1977 IQD Protein Family AT2G26410 51.2 2.0e-43 174.1
Cco03g1216 . 34 441 IQD Protein Family AT3G22190 57.2 1.0e-95 347.4
Cco05g2036 . 1 438 IQD Protein Family AT2G26180 61.6 2.7e-120 429.1
Cco04g2133 . 25 298 IQD Protein Family AT2G33990 52.9 1.2e-62 236.9
Cco07g1069 . 109 292 IQD Protein Family AT2G33990 52.9 1.5e-47 186.8
Cco04g2133 . 80 246 IQD Protein Family AT3G15050 61.7 2.5e-55 212.6
Cco07g1069 . 112 285 IQD Protein Family AT3G15050 61.0 3.0e-53 205.7
Cco01g0795 . 121 473 IQD Protein Family AT5G13460 50.7 3.3e-76 282.7
Cco06g0276 . 1 508 IQD Protein Family AT4G00820 51.5 9.7e-115 411.0
Cco03g1666 . 1 391 IQD Protein Family AT3G16490 50.2 2.0e-64 243.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0002938 1 3 2 3 3 1 2 1 1 1 1 1 2 2 2 2 1 3 2 2 2 2 2 2 2 1 1 1 2 3 54