Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0350 ATGGAGTCCAGTTCTTTTGATCAGAACAGGGGTGTGCCCACCCATGGTGGTCGATACATTCAATACAATGTGTATGGGAATCTATTCGAAGTTCCTAGGAAGTATACTCCACCCATAAGGCCAGTTGGGAGAGGAGCTTATGGAATTGTATGTGCTGCTTTGAACTCAGAAACACATGAAGAGGTTGCAATTAAGAAGGTTGGCAATGCATTTGACAATAGAATTGATGCTAAAAGGACCTTACGAGAAATCAAGCTTCTTAGACACATGGATCATGAAAATATCACTGCTCTCAAAGATATTATAAGACCTCCTCAAAAGGAGAATTTCAATGATGTATACCTTGTTTATGAATTGATGGATACGGATCTAAATCAGATAATACGGTCCAACCAATCATTGACTGATGACCATTGTCGGTTCTTTCTGTACCAGTTGTTACGAGGGCTAAAGTATGTACATTCTGCGAATGTTCTACACCGTGATTTGAAACCAAGCAATTTGTTTCTCAATGCAAATTGTGACCTAAAAATTGGAGACTTTGGGCTTGCAAGGACAACTTCTGAAACCGATTTTATGACCGAGTATGTTGTTACTCGGTGGTATCGTGCACCTGAATTGCTTCTTAATTGCTCAGAATACACTGGAGCAATCGATATCTGGTCTGTTGGCTGTATACTTGGTGAAATTATTCACAGACAACCATTGTTTCCTGGAAGAGACTATGTCCATCAGCTAAAACTTATCACTGAGCTCATTGGTTCACCCGATGACTCGAGTCTCGGATTCTTACGAAGTGACAATCCACGAAGATATTTTAGACATCTTCCTCACTTTCCCAAGCAACAGTTTTCCACTAGATTTCCCACCATGTCTCCTGCTGCCATTGACTTGCTGGAGAAGATGCTAGTCTTTGATCCTACTAAGCGCATTACAGTTGAGGAGGCTCTATGCCATCCATACTTGGCACCTCTTCATGATATCAATGAGGAGCCAGTATGTCCAAGGCCTTTCAGTTTTGATTTCGAGCAACCATCATATACCGAAGAGAACATCAAGGAACTTGTATGGAGAGAATCTGTGAAGTTCAACCCCGATCCTGCTTTTTGA 1110 41.35 MESSSFDQNRGVPTHGGRYIQYNVYGNLFEVPRKYTPPIRPVGRGAYGIVCAALNSETHEEVAIKKVGNAFDNRIDAKRTLREIKLLRHMDHENITALKDIIRPPQKENFNDVYLVYELMDTDLNQIIRSNQSLTDDHCRFFLYQLLRGLKYVHSANVLHRDLKPSNLFLNANCDLKIGDFGLARTTSETDFMTEYVVTRWYRAPELLLNCSEYTGAIDIWSVGCILGEIIHRQPLFPGRDYVHQLKLITELIGSPDDSSLGFLRSDNPRRYFRHLPHFPKQQFSTRFPTMSPAAIDLLEKMLVFDPTKRITVEEALCHPYLAPLHDINEEPVCPRPFSFDFEQPSYTEENIKELVWRESVKFNPDPAF 369
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3933151 3937402 + CcPI632755_06g003500.1 Cco06g0350 180950
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0350 369 ProSiteProfiles Protein kinase domain profile. 36 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0350 369 FunFam Mitogen-activated protein kinase 21 130 - -
Cco06g0350 369 Gene3D Phosphorylase Kinase; domain 1 19 359 - -
Cco06g0350 369 ProSitePatterns MAP kinase signature. 71 174 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0350 369 Pfam Protein kinase domain 40 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0350 369 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 29 358 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco06g0350 369 CDD STKc_TEY_MAPK 29 365 - -
Cco06g0350 369 FunFam Mitogen-activated protein kinase 120 349 - -
Cco06g0350 369 Gene3D Transferase(Phosphotransferase) domain 1 120 349 - -
Cco06g0350 369 SMART serkin_6 36 322 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0350 369 ProSitePatterns Protein kinases ATP-binding region signature. 42 66 IPR017441 GO:0005524(InterPro)
Cco06g0350 369 ProSitePatterns Serine/Threonine protein kinases active-site signature. 158 170 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0350 369 SUPERFAMILY Protein kinase-like (PK-like) 39 329 IPR011009 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g0219 Cco-Chr3:2267317 Cco06g0350 Cco-Chr6:3933151 4.50E-167 dispersed
Cco06g0350 Cco-Chr6:3933151 Cco08g1172 Cco-Chr8:23484820 8.90E-160 dispersed
Cco08g1664 Cco-Chr8:28095412 Cco06g0350 Cco-Chr6:3933151 1.50E-114 transposed
Cco01g0247 Cco-Chr1:2338710 Cco06g0350 Cco-Chr6:3933151 8.30E-185 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86901 PF00069 Pkinase 2.40E-70 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0350 K20600 - csv:101215189 724.161