Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0355 ATGGCTTCTTTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTTTTCCTCTTCTTTTCTCTGCCATCTCTCTCCTTCTCCATCTCGAAAGATGAAGCTTCATATCTCACTCATCGTCAGCTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAAAAGGCTTATGTAGCCCTTCAAGCTTGGAAACTGGCCATTTATTCTGACCCTCAGAACATGACAGTCAATTGGGTTGGTGCCGATGTCTGTTCTTACACTGGCATCTACTGTACTAAGGCGCTTGATGACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCACTGATTTGGCGCTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTTGATCTTCGGTATAATGACTTCGAAGGAGAAGTCCCCTCTACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCTGTTGTCTCCTTTGCCAACAATGAGTTCCATGGTTGCATTCCCAGCACTATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTCAATGGTTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACAGTCTTCGATGCCAGCGCCAATGGCTTCATTGGCCATTTGCCCGAAACCTTATCTGGCCTCCAAAATTTGGAGATCATGGACGTTAGCAACAATGAATTGAGGGGCTCTATTCCTGGAGGCCTTTGCAAGTTGCCCAAATTGGCTAACTTCACTTTCTCCTTTAATTATTTTGATGGCGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAAAATTGTTTGGCGAATCAACCGGAGCAGAAAGATGCAAACAAATGTAGCATTGTCCTAAAGAAATCTGTGGATTGTGGAAACTGTAGTGGTGGTGGTTCAGTCGCGTCTCCCTCTCTTTCTCTCTCTCATCTCCGTTCGTGTACCGCCGGCAGCCCCGTCCAAATTTCGTTCGCCTTTCGCCGATTGGATCTGCCGCCGTCTCGTCTTCCCTTCAGGCCACACCGTGGAGTTAGCCGCGCGACTGCCACAACTGGAAGCTCCGAACGTCGAAGCTGCGGCCGCCATGCACTACTGCTGGTCACCCGTGCGCCGCCGCTTGCCGTGACCGTGTGTGCGCCACCGCCAGCTCTGGCACTCGCCGGATTTTCGGTTGTTGGGGTTAAGATTAACTGA 1491 48.16 MASFHRKQANHACFLLLFLFFSLPSLSFSISKDEASYLTHRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTVNWVGADVCSYTGIYCTKALDDSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLNGCFPPEIGNLVNLTVFDASANGFIGHLPETLSGLQNLEIMDVSNNELRGSIPGGLCKLPKLANFTFSFNYFDGEDATCVGTKGSEKLFDDAQNCLANQPEQKDANKCSIVLKKSVDCGNCSGGGSVASPSLSLSHLRSCTAGSPVQISFAFRRLDLPPSRLPFRPHRGVSRATATTGSSERRSCGRHALLLVTRAPPLAVTVCAPPPALALAGFSVVGVKIN 496
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 3998933 4004466 - CcPI632755_06g003550.1 Cco06g0355 180955
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0355 496 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cco06g0355 496 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 396 IPR051582 -
Cco06g0355 496 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cco06g0355 496 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cco06g0355 496 MobiDBLite consensus disorder prediction 436 455 - -
Cco06g0355 496 SUPERFAMILY L domain-like 84 351 - -
Cco06g0355 496 Gene3D Ribonuclease Inhibitor 73 369 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0355 Cco-Chr6:3998933 Cco06g0357 Cco-Chr6:4020937 1.90E-136 dispersed
Cco06g0355 Cco-Chr6:3998933 Cco06g0356 Cco-Chr6:4009840 3.80E-137 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0355 - - - 0.0