Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0356 ATGGTTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTCCTCTTCCTGTTCTTTTCATTGCCATCTCTCTCTGTCTCCATCTCGGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGCCAATTGGGTTGGCGCCGATGTTTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGACATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCGGAAATTGGCCTTATCACCGATTTGGCACTCTTCCATATTAACTCTAACAGGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTTGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAATCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGATTCACCTCTCTAATTCCAGACACTATCGGAAACTCAACCGTCTCCGTTGTCTCTTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAGCACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTCATCGGCAACAAGCTTGGTGGCTGTTTCCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGTGAGCGCCAATGGCTTCGTCGGCCAGCTGCCCGAAACCTTATCGAGCCTCCAAAATTTGGAGATCATGGATGTTAGCAACAATGAATTGAGGGGCTCTATTCCTGGAGGCTTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCTTTTAATTATTTTGATGGGGAAGATGCAACGTGTGTTGGAACTAAGGGATCAGAGAAACTCTTTGATGATGCTCAGAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCCGAAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCGAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCTGAATCGATAGACACCTTGGTCCCAGAAGTGGGGACTCCTCCTTCACCAAGTTCTGTGGGATCATTCCTTCCAGCTTCTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAATCGCTTCGTCGGCCATTTTCCTCACGTCGTCCTTGAATGGCCCACCGCTAAGTTCCTCGATCTCAGTCTTTAATGCCAGAGATTATGGCTTCATCAGTCAGTTGCCCGAAACCTTATCTAGCCTCCAAAATCTTGAGATTATGGACGTTAGCAACAATGAATTGAGGGGCTCTATTCCTTGA 1593 46.89 MVSLHRKQANHACFLLLFLFFSLPSLSVSISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTANWVGADVCSYTGIYCTTALDNSDMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEIPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPSTIGQMSNLNQILFIGNKLGGCFPPEIGNLVNLTVFDVSANGFVGQLPETLSSLQNLEIMDVSNNELRGSIPGGFCKLPKLANFTFSFNYFDGEDATCVGTKGSEKLFDDAQNCLANRPEQKDANKCSVVLKKSVDCGNCGGGGSGSPEVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIDTLVPEVGTPPSPSSVGSFLPASPSLFSCSSSMSATIASSAIFLTSSLNGPPLSSSISVFNARDYGFISQLPETLSSLQNLEIMDVSNNELRGSIP 530
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4009840 4014117 + CcPI632755_06g003560.1 Cco06g0356 180956
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0356 530 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cco06g0356 530 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 455 IPR051582 -
Cco06g0356 530 MobiDBLite consensus disorder prediction 397 445 - -
Cco06g0356 530 SUPERFAMILY L domain-like 83 351 - -
Cco06g0356 530 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cco06g0356 530 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cco06g0356 530 MobiDBLite consensus disorder prediction 409 432 - -
Cco06g0356 530 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cco06g0356 530 Pfam Leucine rich repeat N-terminal domain 77 110 IPR013210 -
Cco06g0356 530 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g2211 Cco-Chr5:30859276 Cco06g0356 Cco-Chr6:4009840 1.00E-07 dispersed
Cco06g0356 Cco-Chr6:4009840 Cco06g0358 Cco-Chr6:4024727 1.40E-134 dispersed
Cco06g0355 Cco-Chr6:3998933 Cco06g0356 Cco-Chr6:4009840 3.80E-137 tandem
Cco06g0356 Cco-Chr6:4009840 Cco06g0357 Cco-Chr6:4020937 1.90E-155 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0356 - - - 0.0