Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0358 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTTCTCTTCCTCTTCTTGTCTCTGCCATCTCTCTCCATCTCCATCTCGGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGTCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGGCATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGCTTTTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTTGTCCTTGAATGGCCCACTGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGGTTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAACACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTTATCGGCAACAAGCTCGACGGCTGTTTTCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCAAGCGCCAATGGCTTCATCGGCCAGCTGCCTGAAACCTTATATGGCCTCCAAAATCTTGAGATTATGGACGTTAGCAACAATGAATTGACGGGCTCTATTCCTGGAGGCCTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCTTTTAATTATTTTGATGGTGAAGATGCAGCGTGTGTTGGAACTAAGGGATTAGAGAAACTCTTTGATGATGCTCAGAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCTGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCGGAATCGATTGTATCACCAGTCCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTCCATTCCCCACCACCACCGGTCCATTCTCCTCCACCACCAATTCATTCCCCACCACCTCCTGTCAACTCTCCTCCGCCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACTGCCAGTCCATTCCCTTCCACCTCCTGTTCACTCCCCACCACCACCTATCTCCTCTCCTCCACCACCAGTCCATTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGGTCCACTCCCCACCTTCACCGGTCCACTCTCCACCACCACCAGTCCACTCCCCACCCCCACCGGTCTATTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCATTAACTCCTGGTTACTTCCCACCACCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCCGATTCTTCTTCATCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1899 50.24 MASLHRKQANHACFLLLFLFLSLPSLSISISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTVNWVGADVCSYTGIYCTTALDNSGMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPNTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGQLPETLYGLQNLEIMDVSNNELTGSIPGGLCKLPKLANFTFSFNYFDGEDAACVGTKGLEKLFDDAQNCLANRPEQKDANKCSVVLKKSVDCGNCGGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVSPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPLPVHSLPPPVHSPPPPISSPPPPVHSPPPPIYSPPPPVHSPPSPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPLTPGYFPPPPVQSPPPPTASPPPPPPDSSSSPSFEDIILPPNIGFQYASPPPPQFPGY 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4024727 4026625 + CcPI632755_06g003580.1 Cco06g0358 180958
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0358 632 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cco06g0358 632 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 530 IPR051582 -
Cco06g0358 632 MobiDBLite consensus disorder prediction 409 604 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 437 453 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 454 471 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 472 497 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 414 435 - -
Cco06g0358 632 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cco06g0358 632 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cco06g0358 632 MobiDBLite consensus disorder prediction 397 632 - -
Cco06g0358 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cco06g0358 632 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cco06g0358 632 SUPERFAMILY L domain-like 84 359 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0356 Cco-Chr6:4009840 Cco06g0358 Cco-Chr6:4024727 1.40E-134 dispersed
Cco06g0358 Cco-Chr6:4024727 Cco06g1179 Cco-Chr6:21068478 1.00E-38 dispersed
Cco06g0357 Cco-Chr6:4020937 Cco06g0358 Cco-Chr6:4024727 6.60E-09 tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0358 - - - 0.0