Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0358 ATGGCTTCTCTTCATAGAAAGCAAGCTAACCATGCTTGCTTTCTCCTTCTCTTCCTCTTCTTGTCTCTGCCATCTCTCTCCATCTCCATCTCGGAAGCCGAAGCTTCGTATCTCACTCGTCGTCAACTTTTGGCTCTAAAAGAACACGATCAACTCCCAGATGATTACAAATACCAACTTGACATTCCTGACACTTTTCCAAATGAAAGGTTGAAGAAGGCTTATGTAGCCCTTCAAGCTTGGAAATTGGCCATTTATTCTGACCCTCAGAACATGACAGTCAATTGGGTTGGCGCCGATGTCTGTTCTTACACCGGCATCTACTGTACTACGGCGCTTGACAACTCAGGCATGGAGGTTGTGGCTGGCATTGATTTGAACCATGGTGACATTGCAGGGTATTTGCCGCCAGAAATTGGCCTCATCACCGATTTGGCTCTCTTCCATATTAACTCTAACAGGTTTTGTGGGATCATTCCTTCTAGCTTTTCCAAGCTTGTTCTCATGTTCGAGTTCGATGTCAGCAACAACCGCTTCGTCGGCCATTTTCCTCACGTTGTCCTTGAATGGCCCACTGCTAAGTTCCTCGATCTCAGGTATAATGACTTCGAAGGAGAAGTCCCCTCCACACTCTTCACCAAGGAGTTCGATGCCATTTTCTTAAACAACAACAGGTTCACCTCTCTAATTCCAGACACCATCGGAAACTCAACCGTCTCCGTTGTCTCCTTTGCCAACAATGAGTTCCATGGCTGCATTCCCAACACCATTGGCCAAATGTCCAACCTCAACCAAATTCTCTTTATCGGCAACAAGCTCGACGGCTGTTTTCCACCCGAGATCGGAAACCTCGTCAATCTTACGGTCTTCGATGCAAGCGCCAATGGCTTCATCGGCCAGCTGCCTGAAACCTTATATGGCCTCCAAAATCTTGAGATTATGGACGTTAGCAACAATGAATTGACGGGCTCTATTCCTGGAGGCCTTTGCAAGTTGCCCAAATTAGCTAACTTCACTTTCTCTTTTAATTATTTTGATGGTGAAGATGCAGCGTGTGTTGGAACTAAGGGATTAGAGAAACTCTTTGATGATGCTCAGAATTGTTTGGCCAATCGACCGGAGCAGAAAGATGCAAACAAATGTAGCGTTGTCCTAAAGAAATCAGTGGACTGTGGAAACTGTGGTGGTGGTGGTTCGGGTTCTCCTGGAGTGCCAATGACTCCTGAGGATCCATTTGATCAATCTCCATCGCCAAGATATAGGTCTCCACCACCTCCAGTGACCTCTCCACCGGAATCGATTGTATCACCAGTCCATTCACCACCACCTCCCGTTCATTCACCACCACCCCCAGTCCATTCCCCACCACCACCGGTCCATTCTCCTCCACCACCAATTCATTCCCCACCACCTCCTGTCAACTCTCCTCCGCCACCGGTCCATTCTCCTCCACCACCGGTTCATTCCCCACCACCTCCTGTCCACTCTCCTCCACTGCCAGTCCATTCCCTTCCACCTCCTGTTCACTCCCCACCACCACCTATCTCCTCTCCTCCACCACCAGTCCATTCCCCACCTCCTCCTATCTACTCTCCACCACCACCGGTCCACTCCCCACCTTCACCGGTCCACTCTCCACCACCACCAGTCCACTCCCCACCCCCACCGGTCTATTCTCCACCGCCACTGGTCTACTCCCCACCACCCCCGGTCCATTCTCCATTAACTCCTGGTTACTTCCCACCACCACCAGTCCAATCTCCACCACCTCCAACTGCATCTCCTCCTCCTCCTCCTCCCGATTCTTCTTCATCGCCATCATTCGAGGACATCATCCTCCCCCCAAATATCGGCTTCCAATATGCATCACCACCTCCACCACAATTCCCTGGCTACTGA 1899 50.24 MASLHRKQANHACFLLLFLFLSLPSLSISISEAEASYLTRRQLLALKEHDQLPDDYKYQLDIPDTFPNERLKKAYVALQAWKLAIYSDPQNMTVNWVGADVCSYTGIYCTTALDNSGMEVVAGIDLNHGDIAGYLPPEIGLITDLALFHINSNRFCGIIPSSFSKLVLMFEFDVSNNRFVGHFPHVVLEWPTAKFLDLRYNDFEGEVPSTLFTKEFDAIFLNNNRFTSLIPDTIGNSTVSVVSFANNEFHGCIPNTIGQMSNLNQILFIGNKLDGCFPPEIGNLVNLTVFDASANGFIGQLPETLYGLQNLEIMDVSNNELTGSIPGGLCKLPKLANFTFSFNYFDGEDAACVGTKGLEKLFDDAQNCLANRPEQKDANKCSVVLKKSVDCGNCGGGGSGSPGVPMTPEDPFDQSPSPRYRSPPPPVTSPPESIVSPVHSPPPPVHSPPPPVHSPPPPVHSPPPPIHSPPPPVNSPPPPVHSPPPPVHSPPPPVHSPPLPVHSLPPPVHSPPPPISSPPPPVHSPPPPIYSPPPPVHSPPSPVHSPPPPVHSPPPPVYSPPPLVYSPPPPVHSPLTPGYFPPPPVQSPPPPTASPPPPPPDSSSSPSFEDIILPPNIGFQYASPPPPQFPGY 632
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4024727 4026625 + CcPI632755_06g003580.1 Cco06g0358 180958

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0358 632 FunFam Leucine-rich repeat extensin-like protein 1 75 236 - -
Cco06g0358 632 PANTHER LEUCINE-RICH REPEAT EXTENSIN-LIKE PROTEIN 3-RELATED 13 530 IPR051582 -
Cco06g0358 632 MobiDBLite consensus disorder prediction 409 604 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 437 453 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 454 471 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 472 497 - -
Cco06g0358 632 PRINTS Proline rich extensin signature 414 435 - -
Cco06g0358 632 Pfam Leucine Rich Repeat 310 332 IPR001611 GO:0005515(InterPro)
Cco06g0358 632 Gene3D Ribonuclease Inhibitor 72 236 IPR032675 -
Cco06g0358 632 MobiDBLite consensus disorder prediction 397 632 - -
Cco06g0358 632 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 254 348 - -
Cco06g0358 632 Gene3D Ribonuclease Inhibitor 237 353 IPR032675 -
Cco06g0358 632 SUPERFAMILY L domain-like 84 359 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0358 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0356 Cco-Chr6:4009840 Cco06g0358 Cco-Chr6:4024727 1.40E-134 dispersed
Cco06g0358 Cco-Chr6:4024727 Cco06g1179 Cco-Chr6:21068478 1.00E-38 dispersed
Cco06g0357 Cco-Chr6:4020937 Cco06g0358 Cco-Chr6:4024727 6.60E-09 tandem
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco05g0576 . 32 363 Leucine-rich Repeat extension Gene Families AT1G62440 61.3 6.1e-49 193.0
Cco07g0244 . 46 375 Leucine-rich Repeat extension Gene Families AT1G62440 58.8 1.7e-43 174.9
Cco11g0272 . 72 423 Leucine-rich Repeat extension Gene Families AT1G62440 61.6 1.1e-42 172.2
Cco06g1179 . 59 231 Leucine-rich Repeat extension Gene Families AT1G62440 68.8 8.0e-41 166.0
Cco06g1179 . 32 403 Leucine-rich Repeat extension Gene Families AT4G13340 76.7 2.2e-67 254.2
Cco11g0272 . 37 423 Leucine-rich Repeat extension Gene Families AT4G13340 74.0 2.8e-67 253.8
Cco05g0576 . 18 365 Leucine-rich Repeat extension Gene Families AT4G13340 67.3 3.2e-55 213.8
Cco07g0244 . 39 376 Leucine-rich Repeat extension Gene Families AT4G13340 62.5 1.7e-43 174.9
Cco06g0356 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cco06g0357 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 53.4 1.5e-39 161.8
Cco06g0355 . 15 225 Leucine-rich Repeat extension Gene Families AT4G13340 52.5 3.6e-38 157.1
Cco06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT4G13340 56.8 3.6e-38 157.1
Cco06g1179 . 22 398 Leucine-rich Repeat extension Gene Families AT3G24480 74.6 6.5e-73 271.9
Cco11g0272 . 37 419 Leucine-rich Repeat extension Gene Families AT3G24480 73.0 4.2e-72 269.2
Cco05g0576 . 25 365 Leucine-rich Repeat extension Gene Families AT3G24480 64.3 1.2e-53 208.0
Cco07g0244 . 46 376 Leucine-rich Repeat extension Gene Families AT3G24480 60.5 5.8e-45 179.1
Cco06g0355 . 25 404 Leucine-rich Repeat extension Gene Families AT3G24480 50.8 1.9e-40 164.1
Cco06g0357 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 5.6e-40 162.5
Cco06g0356 . 25 393 Leucine-rich Repeat extension Gene Families AT3G24480 50.7 9.5e-40 161.8
Cco06g0358 . 34 225 Leucine-rich Repeat extension Gene Families AT3G24480 52.3 1.1e-38 158.3
Cco05g0576 . 15 364 Leucine-rich Repeat extension Gene Families AT3G22800 71.9 1.4e-72 270.8
Cco07g0244 . 39 375 Leucine-rich Repeat extension Gene Families AT3G22800 64.2 3.9e-51 199.5
Cco06g1179 . 71 399 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 8.5e-38 155.2
Cco11g0272 . 84 417 Leucine-rich Repeat extension Gene Families AT3G22800 62.5 2.7e-36 150.2
Cco06g1179 . 45 403 Leucine-rich Repeat extension Gene Families AT5G25550 61.2 8.3e-40 161.8
Cco11g0272 . 58 417 Leucine-rich Repeat extension Gene Families AT5G25550 62.4 1.6e-38 157.5
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000785 1 2 1 1 0 5 5 5 5 1 2 5 5 4 2 4 4 4 3 4 4 3 2 4 3 3 5 2 2 1 92