Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0387 ATGGACCGAAGGGATCCGATGGCTTTATCGGGGTCGCAATCTTTCTATATGCAGAGGGGAATTAGCAACTCTGGCTCTGGAGCACAGGGTTTGCGTTCCTCTACTAACCCAAATGTGGCATTTCAGACCAACACTGGAGGAAACAATGTTGGATCAGGGTTGCCAATGGACCCTAACCCTGCCATTTCACCTTATGGTGGCAATGTGGGGGCTCAATCTGGTGGAGTAGTTGCCAGTGAGCCTGTGAAACGCAAGCGAGGTCGGCCTCGCAAGTATGGAACTGAAGGGACTGTGTCTTTGGCACTGTCTCCCTCCCCTTCTGCTTTAAATCCAGCCACTGTAGCTTCTTCCCCAAAGCGGGGAAGGGGACGGCCTCCCGGCTCTGGAAAGAAGCAACAAATGGCTTCTCTTTGTGAAACACTTTCTGGGTCAGCTGGCATGGGTTTTACTCCACATGTTATCACCATTGGAATAGGAGAAGATGTTGGTGCCAAGATTATGTCATTTTCACAGCAGGGACCAAGAGTTGTATGCATCTTGTCAGCAAATGGTGCTGTCTCCACTGTTACTCTTCGTCAGCCTTCGACTTCGGGAGGCACAGTCACATACGAGGGGCGTTTCGAGATAATATGTCTGTCGGGCTCTTATGCTCTTGGAGAAGTTGCTGGTTCTAGGAACCGCACTGGTGGTCTGAGTGTCTCCCTTGCTAGCCCTGATGGGCGCGTTATCGGCGGTGGAGTAGGAGGAGCGCTTATCGCAGCAACCCCGGTTCAGGTAATAGTAGGGAGTTTCATGTGGGGCAGTTCGAAGTCGAAGTACAAGAAGAGGGAAGCTGTTGAAGGCGTGATCGACTCGGATCATCAGTCGGTAGATCATGCAGTTGCAATCGCAAACGTGCAGCAGAATCAGAATCTGACTCCAACGTCGTCAGTTAGCATGTGGCCATCCTCGCAGTCTCTGGACATGCGCAATGCTCACATTGACATCGATCTGATGCGCGGTTGA 1005 51.64 MDRRDPMALSGSQSFYMQRGISNSGSGAQGLRSSTNPNVAFQTNTGGNNVGSGLPMDPNPAISPYGGNVGAQSGGVVASEPVKRKRGRPRKYGTEGTVSLALSPSPSALNPATVASSPKRGRGRPPGSGKKQQMASLCETLSGSAGMGFTPHVITIGIGEDVGAKIMSFSQQGPRVVCILSANGAVSTVTLRQPSTSGGTVTYEGRFEIICLSGSYALGEVAGSRNRTGGLSVSLASPDGRVIGGGVGGALIAATPVQVIVGSFMWGSSKSKYKKREAVEGVIDSDHQSVDHAVAIANVQQNQNLTPTSSVSMWPSSQSLDMRNAHIDIDLMRG 334
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4285278 4288546 + CcPI632755_06g003870.1 Cco06g0387 180987
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0387 334 PRINTS AT-hook-like domain signature 83 93 IPR017956 GO:0003677(InterPro)
Cco06g0387 334 PRINTS AT-hook-like domain signature 117 128 IPR017956 GO:0003677(InterPro)
Cco06g0387 334 Pfam Plants and Prokaryotes Conserved (PCC) domain 151 264 IPR005175 -
Cco06g0387 334 ProSiteProfiles PPC domain profile profile. 145 286 IPR005175 -
Cco06g0387 334 CDD DUF296 150 264 IPR005175 -
Cco06g0387 334 SMART AT_hook_2 83 95 IPR017956 GO:0003677(InterPro)
Cco06g0387 334 SMART AT_hook_2 119 131 IPR017956 GO:0003677(InterPro)
Cco06g0387 334 Gene3D - 151 283 - -
Cco06g0387 334 MobiDBLite consensus disorder prediction 11 52 - -
Cco06g0387 334 FunFam AT-hook motif nuclear-localized protein 1-like 151 281 - -
Cco06g0387 334 MobiDBLite consensus disorder prediction 98 114 - -
Cco06g0387 334 MobiDBLite consensus disorder prediction 1 135 - -
Cco06g0387 334 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 44 317 IPR039605 GO:0003680(InterPro)
Cco06g0387 334 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 274 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0387 Cco-Chr6:4285278 Cco11g0056 Cco-Chr11:602073 2.10E-54 dispersed
Cco11g1956 Cco-Chr11:32080088 Cco06g0387 Cco-Chr6:4285278 3.40E-52 transposed
Cco08g1074 Cco-Chr8:22542348 Cco06g0387 Cco-Chr6:4285278 3.90E-61 transposed
Cco01g0286 Cco-Chr1:2755950 Cco06g0387 Cco-Chr6:4285278 7.40E-72 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0387 - - - 0.0