Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g0416 | ATGTGGGAGCCCTCCTTGGTAGTGTGGACATTTTTCATTCTTACATTGTTGTCCATTACTTTCCTTTCAAAAATACTTAAAAATGGAAAGTACATTGGCCAAGAGGATCAAAGTCAGAGGAGAAACAAATTTCCTCCAGGGAGAAGAAGCTGGCCTGTCATAGGTGATAGCTTCCATTGGTACTCTGCCATTGCAAGTTCTCATCCTTCCAAGTATGTTGAAGAACAGGCCAAAAGATACGGGAAGATCTTCTCGTGTCGTATTTTTGGAAAATGCACAGTGGTATCGATCGATCCAGAATTTAATAGGTATGTGATGCAAAACGAAGGAACATTGTTTCAATCAAGTTATCCCAAATCTTTTCGAGATTTGGTAGGCCTCAATGGTGTCATCACAGTCCAAGGGGAACAACAAAGGAAACTCCACGCAATTGCTTCCAATTTTATGCGTATAAACAAACTCAACTTTAGCTTCCTGAAAGATATTCAAACCATAATTATCCATTCCTTGACCACTTTCCATGACGGTCATCAAGTCATATCTCTCCAAGATGCTTGCAGGAAGATTGCCATTAATCTAATGGTAAGTCAACTATTGGGGGTATCAAGTGAATCTGAAGTGAATGAAATTAGTCAGTTATTTTACGACTTCGTGGATGGCTGTCTATCTATTCCTATCAACTTACCTGGCTTTGCCTATTACAATGCAATGAAGGCAAGGAAGCAAATCATAAGCAAAATTAAGAAGAAAATAAAGATGCACAAATCAGGCGTAGCAATGGGAACGAGCGGGCAGGAAGTGCTTGCAAGACTATTAGAAGAACAAAAGTACTTATCCGATGAGGCAGTTGAAGATTTCATTATCAATCTTCTTTTTGCTGGAAACGAAACCACTTCTAAAACGATGCTTTTCGCAGTCTATTACCTAACCCACTCACCAAAAGCAATGAAGCAACTCCTGGATGAACAAGATGCTTTAAGAAATGAGTATGGAGATAATACAATCACATGGCAGGACTACAAATCAATGCCCTTTACCCAGTGTGTTATTGATGAGACGCTTCGACTCGGAGGAATTGCAATTTGGTTGATGAGGGAGACAAAAGAAGAGATCAAATACTCAGATTACGTGATTCCAAAGGGAACCTTTGTTGTTCCATTCCTTTGTGCTGTACATTTGGACGAGAATATATATGATGGAGCTTTAACTTTTAACCCTTGGAGATGGATGGAGCTTAAAAATCAGGAAATGAGAAATTGGAGGAATAGCCCATTCTTTGCTCCATTTGGAGGAGGTGGTAGGTTGTGTCCGGGAGCAGAATTGGCCCGTCTCCAAATTGCTTTATTTCTCCACCACTTTGTTACTAAGTACAGGTGGACACAAATTAAAGCAGATAGAATGTCTTTCTTTCCCTCTGCTCGGCTAGTCAACGGCTTCCAAATTCGCTTGGAAAAATGGGAACACTGA | 1467 | 40.22 | MWEPSLVVWTFFILTLLSITFLSKILKNGKYIGQEDQSQRRNKFPPGRRSWPVIGDSFHWYSAIASSHPSKYVEEQAKRYGKIFSCRIFGKCTVVSIDPEFNRYVMQNEGTLFQSSYPKSFRDLVGLNGVITVQGEQQRKLHAIASNFMRINKLNFSFLKDIQTIIIHSLTTFHDGHQVISLQDACRKIAINLMVSQLLGVSSESEVNEISQLFYDFVDGCLSIPINLPGFAYYNAMKARKQIISKIKKKIKMHKSGVAMGTSGQEVLARLLEEQKYLSDEAVEDFIINLLFAGNETTSKTMLFAVYYLTHSPKAMKQLLDEQDALRNEYGDNTITWQDYKSMPFTQCVIDETLRLGGIAIWLMRETKEEIKYSDYVIPKGTFVVPFLCAVHLDENIYDGALTFNPWRWMELKNQEMRNWRNSPFFAPFGGGGRLCPGAELARLQIALFLHHFVTKYRWTQIKADRMSFFPSARLVNGFQIRLEKWEH | 488 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 4522798 | 4533208 | + | CcPI632755_06g004160.1 | Cco06g0416 | 181016 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g0416 | 488 | Gene3D | Cytochrome P450 | 34 | 486 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | ProSitePatterns | Cytochrome P450 cysteine heme-iron ligand signature. | 429 | 438 | IPR017972 | GO:0005506(InterPro)|GO:0016705(InterPro) | |
| Cco06g0416 | 488 | PANTHER | CYTOCHROME P450 26 | 43 | 457 | - | GO:0004497(PANTHER)|GO:0007275(PANTHER)|GO:0010268(PANTHER)|GO:0016125(PANTHER)|GO:0016132(PANTHER)|GO:0016491(PANTHER) | |
| Cco06g0416 | 488 | CDD | CYP90-like | 78 | 485 | - | - | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 376 | 390 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 392 | 410 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 71 | 94 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 436 | 454 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 343 | 359 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 284 | 310 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | E-class P450 group IV signature | 420 | 436 | IPR002403 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | P450 superfamily signature | 427 | 436 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | P450 superfamily signature | 293 | 310 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | P450 superfamily signature | 348 | 359 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | PRINTS | P450 superfamily signature | 436 | 447 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | Pfam | Cytochrome P450 | 45 | 464 | IPR001128 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) | |
| Cco06g0416 | 488 | SUPERFAMILY | Cytochrome P450 | 39 | 484 | IPR036396 | GO:0004497(InterPro)|GO:0005506(InterPro)|GO:0016705(InterPro)|GO:0020037(InterPro) |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0416 | Cco-Chr6:4522798 | Cco07g0983 | Cco-Chr7:22659311 | 2.00E-82 | dispersed | |
| Cco06g0416 | Cco-Chr6:4522798 | Cco09g0055 | Cco-Chr9:478274 | 1.70E-81 | transposed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g0416 | - | - | - | 0.0 |