Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0417 ATGGCCGCGGCCGCTTCTCTGGGGAACCCTGCTCTTACCAGAATCACCTTACTTGGTCGTATAAACAAACATCACTTGACTTCACCTACAGCTCAGAAGATGACGCTGTGTCTCTGCACCATGGACTCCAAATCAGTAGGTATTGGAGGTGATGTATTTTCTGTGACATCGTCGGCCAAGTCCGGAGTTGATTATCTTGGACAGAGCACTAAAGGAGATATGAATCTTAAACTCGAACATCTTGAGGCTTTTGGCGTAGATGGTGAAGAAACCTTAGAAGGTCCAATCGAGGAAGTTGCGAGGTTGGAGGCACATGAAGCCGAGGATCTCCTTAGAGATTTGGGAATACCGACTCCTTCATCAAGAAATTCACCACATGGTATATTTTGTAGCCGAACATTGAATCTTCGATCAATCAGTGCAATTGGATACGACATGGACTACACTTTGATGCATTATAATGTCATGGCTTGGGAGGGAAGAGCGTACGACTACTGTATGGAAAACTTAAAGAACATGGGTTTCCCTGTCGATGGACTTGCATTTGACCCAGACTTGGTTATAAGAGGCCTTGTCATAGACAAAGAGAGAGGTAACTTAGTAAAGGCTGATCGTTTTGGTTATATAAAAAGAGCAATGCATGGAACAAACATGCTGTCTACTCGAGATCTAAGTGAGATTTATGGGAGGGAATTGGTGGATCTGCGTAAGGAGAATCGATGGGAGTTCCTAAATACGCTATTCTCTGTATCGGAGGCTGTTGCCTATATGCAGATGGTAGACAGATTGGACGATGGAGCCATAGGAGCAGCACTTGGTCCACTTGATTATAAAGGACTCTACAAGGCTGTTGGGAAAGCACTATTCAGGGCACATGTCGAGGGTCAGCTTAAGAGTGAGATAATGTCTAATCCTGAATTATTTGTCGAGCCAGACCCTGTACTACCATTGACCCTATTGGACCAAAAAGAGGCTGGAAAAAAGCTTTTGCTTATCACCAACTCGGATTATCATTACACAAATAAAATGATGCAGCATTCTTTTGATAGATTTCTTCCAAATGATATGGGATGGCGAGATCTATTTGATATTGTAATAGTCTCAGCAAGAAAGCCAGAGTTTTTCCAAATGTCTCATCCATTGTACGAGGTGGTGACTGGTGAGGGTCTCATGCGCCCGTGCTTCAAGGCAGTTGCAGGGGGCTTGTACTCTGGTGGTAGCGCACAAATGGTTGAGAATTCTTTAAACATTCATGGTGATGAGATTTTGTATGTAGGTGATCATATTTATACCGATGTAAGCCAATCTAAAGTACACTTGCGCTGGAGAACAGCATTAATTCTACGAGAATTGGAAGAAGAGTATAGTGCTTTGATTCATAGTCGTGGTCATCGTGGATCTCTCATTGAGCTTATAAATCAAAAGGAAGTTGTGGGGGATCTATTCAATCAACTTCGGCTTGCTTTGCAAAGGCGTAGTCAAGGTCGTCCTGCTCAAACCCTTGCAGCGACTAACATGGATGATGAGGAACTCACTGAAAGCATGCAAAAGCTGCTCATAGTCATGCAAAGATTAGACCAGAAAATTGCTCCAATGCTAGAAGCAGATGGAGAGCTATTCAACAAAAGGTGGGGTTTTCTTTCCCGTGCAGGCCTATGGGATAAAAGCCATTTGATGAGACAAATTGAGAAGTATGCGGATATATACACTTCGAGGGTTTCGAACTTCTTACACTACACGCCATTCACGTATTTCCGCTCTCAAGAACAGACATTGGCTCATGACTCATACTCGTTCTACTGTGATGCTTATGGTGGAAGGTTCAATAAAAGAAAGGAGAGTATTGTATTGTTTAGTTCAGAAAAAAGGTTGATATGGAAGTTGGGAGGAGTAGAAGAAGATAAGGTGTGGTGTGGTGGAGAATCGGAAAGCTTTGGATATGGTGGTTTGAATTTAGGGTTCTCTTTTGTTTGTGAAGGTGGTGACTGGTGTGGGATGATGAAGAAGCTAAGATGGGCAATGGACGGCCAAGGTTTCTGGGATCTCGATGTTTCAACGCCTAGAACACTCGATGGCTCTGCTTCCCCTGTTCCTTCTCATTTACAATTACTTCCTTTGGGATTATCCAGAGGCGTTCGTCTTTCCCGGGCCAAGCAGATCGATTTCATGCAGAGTTTCATGGCTGCTCCTTTTCTTCCTTCTTATTCCCCCTCCCATGGCTTCTCTCTCCAACGCGTCTTCTCCATCCCCTTTTCAGATTCTGGCTCTGCTACTCTCTTAGGCCAGTTCAATTTGCAGAAATTCATCTCATCTCTTAAGAAATCTGGTGTTGGAGACATGGGTCAGTCGCTTTCTTCATTTCTGCAATGCATTGGAAGGCATCTTCGCCATCGGTCTTTGTATGCCCTTGGTATCTCTTCTGATATCTTGTTACCACCTGATGATTCCTTGATGATTAGCTTCGATGGATATGGCGACAGTGAAATAGTTCGAACAAAAGCAGTATTCCACCACAAGTTCCTACATCATGATCTAACTATGGAGGCACTTTCTCCAGGACTTTTCGTGGACAAATCTGGAAAATATTGGGATGTGCCTTCTTCAATAGTTGTTGATCTAGGTTCTGCTGCTTCTGAATCGGGTTTAAGCTATCATTTGTCTATGCACCAGAATGCTGGGTCTCCCTCGCAATCTGGAAGTGAACAGACTTGTTCGGCTCCTTTCTGTTTATTTCCTGGCCTTTCAGCCAAGGCTGCTTTTGCCTTTAAGAAGAACTTGGAAATCTGGAGAAGCAACGCCAAGAAGTTAAAGAGGGTGCAACCGTATGACATTTTCCTGTCAACTCCCCATGTTTCATTGTCAGCAATCATTGGTGCTGTGGTTACTACCTACTTTGGAGACAATTCGGTTATATCAGCAGCACAAGACGGTCTTCAGGAATTTAAAGGACTTTACATGCAGACTTCTGGAACAAGATCTACTATTTTCGCAGATTTATTTGCCTCCATTTCTTTTTCATCTCAGTATGGGATGTTTCAAAGGAAATATTTGGATCTTACCCGTTTTTCTGCATGTATGGATTTCCATTCTGGCTCAAAGTTCATTTCAGGAGCCATGCTTTTGATGGATGATCTTTCCAACTCCCGGCACCCAAGAACTGAATCTGTGAAAGCGACCTTGCCTAACGCTAGATTTTCCCTTCAGCAGCAGATCGCTGGACCTGTCAGCTTTAGAGCAGATTCAGGAGTTACAATAGATTTGAATAAAGCAGGGTGGGGTTTATTAGGAGTGAATGAGCCTACATTTGCCTTGGAATATGCGTTACAGGTCCTTGGTTCAGCTAAAGCCATTGCTTGGTATTCACCAAAGCACAGAGAATTTATGGTAGAGCTTCGTTTCTATGAGACCTGA 3411 43.45 MAAAASLGNPALTRITLLGRINKHHLTSPTAQKMTLCLCTMDSKSVGIGGDVFSVTSSAKSGVDYLGQSTKGDMNLKLEHLEAFGVDGEETLEGPIEEVARLEAHEAEDLLRDLGIPTPSSRNSPHGIFCSRTLNLRSISAIGYDMDYTLMHYNVMAWEGRAYDYCMENLKNMGFPVDGLAFDPDLVIRGLVIDKERGNLVKADRFGYIKRAMHGTNMLSTRDLSEIYGRELVDLRKENRWEFLNTLFSVSEAVAYMQMVDRLDDGAIGAALGPLDYKGLYKAVGKALFRAHVEGQLKSEIMSNPELFVEPDPVLPLTLLDQKEAGKKLLLITNSDYHYTNKMMQHSFDRFLPNDMGWRDLFDIVIVSARKPEFFQMSHPLYEVVTGEGLMRPCFKAVAGGLYSGGSAQMVENSLNIHGDEILYVGDHIYTDVSQSKVHLRWRTALILRELEEEYSALIHSRGHRGSLIELINQKEVVGDLFNQLRLALQRRSQGRPAQTLAATNMDDEELTESMQKLLIVMQRLDQKIAPMLEADGELFNKRWGFLSRAGLWDKSHLMRQIEKYADIYTSRVSNFLHYTPFTYFRSQEQTLAHDSYSFYCDAYGGRFNKRKESIVLFSSEKRLIWKLGGVEEDKVWCGGESESFGYGGLNLGFSFVCEGGDWCGMMKKLRWAMDGQGFWDLDVSTPRTLDGSASPVPSHLQLLPLGLSRGVRLSRAKQIDFMQSFMAAPFLPSYSPSHGFSLQRVFSIPFSDSGSATLLGQFNLQKFISSLKKSGVGDMGQSLSSFLQCIGRHLRHRSLYALGISSDILLPPDDSLMISFDGYGDSEIVRTKAVFHHKFLHHDLTMEALSPGLFVDKSGKYWDVPSSIVVDLGSAASESGLSYHLSMHQNAGSPSQSGSEQTCSAPFCLFPGLSAKAAFAFKKNLEIWRSNAKKLKRVQPYDIFLSTPHVSLSAIIGAVVTTYFGDNSVISAAQDGLQEFKGLYMQTSGTRSTIFADLFASISFSSQYGMFQRKYLDLTRFSACMDFHSGSKFISGAMLLMDDLSNSRHPRTESVKATLPNARFSLQQQIAGPVSFRADSGVTIDLNKAGWGLLGVNEPTFALEYALQVLGSAKAIAWYSPKHREFMVELRFYET 1136
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4537802 4553444 + CcPI632755_06g004170.1 Cco06g0417 181017

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0417 1136 CDD HAD_cN-II 129 451 - -
Cco06g0417 1136 Pfam 5' nucleotidase family 128 596 IPR008380 -
Cco06g0417 1136 FunFam Haloacid dehalogenase hydrolase 287 478 - -
Cco06g0417 1136 SUPERFAMILY HAD-like 125 597 IPR036412 -
Cco06g0417 1136 Gene3D - 290 477 IPR023214 -
Cco06g0417 1136 NCBIfam HAD-IG family 5'-nucleotidase 128 465 IPR008380 -
Cco06g0417 1136 PANTHER EXPRESSED PROTEIN 667 1136 IPR044160 GO:0009941(PANTHER)|GO:0034196(InterPro)|GO:0070300(PANTHER)|GO:0070300(InterPro)|GO:1990052(PANTHER)|GO:1990052(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0417 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0417 Cco-Chr6:4537802 Cco08g1689 Cco-Chr8:28306703 4.20E-59 dispersed
Cco06g0417 Cco-Chr6:4537802 Cco05g0337 Cco-Chr5:2738269 3.70E-71 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g265 . . . . . . Bma04g01150 . . . . . . . . . . . . . . . . . Cla06g00387 Cam06g0409 . Cco06g0417 Clacu06g0397 Cmu06g0396 Cre06g1173 . . . . . . . . . . . . . . . . Sed09g0582 . . . . . . Cpe12g00352 . Bhi12g02004 Tan06g2821 Cmetu11g1819 Lac11g1073 Hepe03g0004 . Lcy12g0920 . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0012890 1 1 0 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 28