Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0422 | ATGCGACTGGGAAAGTACGAGCTTGGAAAAACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCACCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGATTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACCTGGTTCTCGAGTACGTTAACGGCAAAGAATTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCACAGAGATCTCAAGTTGGAGAACATACTTGTTGATGCCATGGGAAATGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGATAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTGATGATGAGGAAGAAGATATATACACCAGTGAAGCTGTGGCCTTCCCAATGCATCAAGTGAGGTCAGAGTCTTCCAGTACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTCAACCGGATGGATGATCTTGTAACTAATATGGGATTTCTTGTCCAAAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCAGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATTTAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG | 1281 | 39.5 | MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKIIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYLVLEYVNGKELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDAMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLDDEEEDIYTSEAVAFPMHQVRSESSSTINAFQLIGMSSCLDLSGFFEKEDISERKIRFTTNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSFRQLCNILSSDLGVPSNQDSVMA | 426 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4602408 | 4612304 | + | CcPI632755_06g004220.1 | Cco06g0422 | 181022 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0422 | 426 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 125 | 137 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0422 | 426 | Pfam | NAF domain | 296 | 355 | IPR004041 | GO:0007165(InterPro) | |
Cco06g0422 | 426 | SUPERFAMILY | Protein kinase-like (PK-like) | 3 | 293 | IPR011009 | - | |
Cco06g0422 | 426 | FunFam | Non-specific serine/threonine protein kinase | 1 | 85 | - | - | |
Cco06g0422 | 426 | Gene3D | Kinase associated domain 1, KA1 | 292 | 417 | - | - | |
Cco06g0422 | 426 | FunFam | Non-specific serine/threonine protein kinase | 295 | 418 | - | - | |
Cco06g0422 | 426 | CDD | CIPK_C | 299 | 415 | - | - | |
Cco06g0422 | 426 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 85 | - | - | |
Cco06g0422 | 426 | FunFam | Non-specific serine/threonine protein kinase | 1 | 299 | - | - | |
Cco06g0422 | 426 | Gene3D | Transferase(Phosphotransferase) domain 1 | 86 | 284 | - | - | |
Cco06g0422 | 426 | ProSiteProfiles | NAF domain profile. | 293 | 317 | IPR018451 | GO:0007165(InterPro) | |
Cco06g0422 | 426 | Pfam | Protein kinase domain | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0422 | 426 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0422 | 426 | SMART | serkin_6 | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0422 | 426 | ProSiteProfiles | Protein kinase domain profile. | 6 | 261 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0422 | 426 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 4 | 405 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0422 | Cco-Chr6:4602408 | Cco06g1418 | Cco-Chr6:24685348 | 6.10E-104 | dispersed | |
Cco06g0422 | Cco-Chr6:4602408 | Cco06g0423 | Cco-Chr6:4620896 | 2.00E-163 | tandem | |
Cco02g1382 | Cco-Chr2:26023476 | Cco06g0422 | Cco-Chr6:4602408 | 7.00E-48 | wgd | |
Cco03g1843 | Cco-Chr3:33116862 | Cco06g0422 | Cco-Chr6:4602408 | 4.60E-16 | wgd | |
Cco05g0821 | Cco-Chr5:6884682 | Cco06g0422 | Cco-Chr6:4602408 | 7.70E-158 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86903 | PF00069 | Pkinase | 1.00E-71 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0422 | K07198 | - | csv:101206030 | 721.85 |