Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0422 ATGCGACTGGGAAAGTACGAGCTTGGAAAAACTCTGGGGCATGGCAATTTTGGGAAGGTCAAATTTGCTATTAATTTCGAAACTCACCAACCCTTTGCTGTCAAAGAAGTTGATAAGACCAAGATTATCCATCTTAATATCACCCATCAGTTTAAAAGGGAAATACAAACTCTCAAACTTCTCAAGCATCCAAATATAGTGAGGCTACATGAGGTTTTGGCTAGTAAAAGCAAAATTTACCTGGTTCTCGAGTACGTTAACGGCAAAGAATTATTTGATACAATCGCATCAAAGGGGAAGCTATCAGAAGCTCAAGGCAGAAAAATCTTCCAACAATTACTTGATGGTGTGAGTTACTGCCATAGGAAAGGCGTTTACCACAGAGATCTCAAGTTGGAGAACATACTTGTTGATGCCATGGGAAATGTTAAGATAACTGACTTTGGCTTAAGTGCTTTACCTGAGCATTTTAGGGACGATGGTTTGCTTCACACTACCTGTGGAAGCCCAAATTACGTAGCACCAGAAATTCTTGCTAACAGAGGGTATGATGGTGCTGCCTCAGATATTTGGTCTTGTGGTGTTATCCTGTTTGTAATTCTTACAGGATCTCTTCCTTTCGATGATAGAAATCTGTCTGTTCTTTATCATAAGATTTTGAAAGGAGAAATTCAGCTACCAAAGTGGTTGTCACAAGGAGCCCAAAATTTGATAAGAAGGATTCTTGATCCCAACCCTATTTCTAGAATAACTATGGCATCCATCAAAATGGATGATTGGTTTAGAACAGACTATCATCCAGCCTACCTTGATGATGAGGAAGAAGATATATACACCAGTGAAGCTGTGGCCTTCCCAATGCATCAAGTGAGGTCAGAGTCTTCCAGTACTATAAATGCTTTTCAACTGATTGGAATGTCCTCATGCTTGGACCTTTCAGGTTTCTTTGAGAAAGAGGACATTTCTGAGAGGAAGATTAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTCAACCGGATGGATGATCTTGTAACTAATATGGGATTTCTTGTCCAAAAGAAACAAGGAAGGTTGAAAGTAATGAGAGAGGAAAAGGGTGAGAATGGTGTGTCCACCATACTTTCGGTATCAGCAGAGGTTTTTGAGATAAGTCCATCACTATACGTTGTAGAATTAAGAAAGTTGCATGGAGATTCATCTTCATTTAGACAGTTGTGTAATATATTATCTAGTGATTTGGGTGTCCCCTCCAACCAAGACTCGGTGATGGCATAG 1281 39.5 MRLGKYELGKTLGHGNFGKVKFAINFETHQPFAVKEVDKTKIIHLNITHQFKREIQTLKLLKHPNIVRLHEVLASKSKIYLVLEYVNGKELFDTIASKGKLSEAQGRKIFQQLLDGVSYCHRKGVYHRDLKLENILVDAMGNVKITDFGLSALPEHFRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDRNLSVLYHKILKGEIQLPKWLSQGAQNLIRRILDPNPISRITMASIKMDDWFRTDYHPAYLDDEEEDIYTSEAVAFPMHQVRSESSSTINAFQLIGMSSCLDLSGFFEKEDISERKIRFTTNHSTKEDILNRMDDLVTNMGFLVQKKQGRLKVMREEKGENGVSTILSVSAEVFEISPSLYVVELRKLHGDSSSFRQLCNILSSDLGVPSNQDSVMA 426
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4602408 4612304 + CcPI632755_06g004220.1 Cco06g0422 181022
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0422 426 ProSitePatterns Serine/Threonine protein kinases active-site signature. 125 137 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0422 426 Pfam NAF domain 296 355 IPR004041 GO:0007165(InterPro)
Cco06g0422 426 SUPERFAMILY Protein kinase-like (PK-like) 3 293 IPR011009 -
Cco06g0422 426 FunFam Non-specific serine/threonine protein kinase 1 85 - -
Cco06g0422 426 Gene3D Kinase associated domain 1, KA1 292 417 - -
Cco06g0422 426 FunFam Non-specific serine/threonine protein kinase 295 418 - -
Cco06g0422 426 CDD CIPK_C 299 415 - -
Cco06g0422 426 Gene3D Phosphorylase Kinase; domain 1 1 85 - -
Cco06g0422 426 FunFam Non-specific serine/threonine protein kinase 1 299 - -
Cco06g0422 426 Gene3D Transferase(Phosphotransferase) domain 1 86 284 - -
Cco06g0422 426 ProSiteProfiles NAF domain profile. 293 317 IPR018451 GO:0007165(InterPro)
Cco06g0422 426 Pfam Protein kinase domain 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0422 426 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cco06g0422 426 SMART serkin_6 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0422 426 ProSiteProfiles Protein kinase domain profile. 6 261 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0422 426 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 4 405 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0422 Cco-Chr6:4602408 Cco06g1418 Cco-Chr6:24685348 6.10E-104 dispersed
Cco06g0422 Cco-Chr6:4602408 Cco06g0423 Cco-Chr6:4620896 2.00E-163 tandem
Cco02g1382 Cco-Chr2:26023476 Cco06g0422 Cco-Chr6:4602408 7.00E-48 wgd
Cco03g1843 Cco-Chr3:33116862 Cco06g0422 Cco-Chr6:4602408 4.60E-16 wgd
Cco05g0821 Cco-Chr5:6884682 Cco06g0422 Cco-Chr6:4602408 7.70E-158 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86903 PF00069 Pkinase 1.00E-71 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0422 K07198 - csv:101206030 721.85