Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0423 | ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATCGGGCATGGCAGTTTTAGTAAGGTCAAATTTGCTATAAACCTTGAAACTGGCCAACCTTTTGCTATCAAGGTCCTCGACAAGACCAAAATCATCGATCTCAATTTCACGAATCAGGTATTGGCCAGTAAAAGCAAAATTTATATGGTTCTTGAGTACGTGAACGGCGGAGAATTGTATAATAGAATAGCATCGAAAGGGAAGGTATCAGAAGACGAAGGCAGAAAAATCTTCCAACAGTTAATTGATGGTGTGAGTTACTGCCATAGGAAAGGTGTTTACCATAGGGATCTCAAGCTAGAGAACATACTTGTGGATGCCAGAGGAAATATCAAGATATCTGATTTTGGATTAAGTGCATTACTAGAGCATTTAAGGGACGATGGTCTGCTTCACACTACCTGTGGAAGCCCAAACTACGTGGCACCCGAGATTCTTGCTAATAGAGGCTATGATGGTGCGGCGTCAGATATTTGGTCTTGTGGTGTTATCTTGTTTGTAATTCTCACAGGATCACTCCCTTTCGATGACACAAATTTGTGTGTCCTTTACCAAAAGATCTTGAAAGGAGAAACTCAATTACCAATGTGGCTGTCACAAGGGGCCCAAAATTTAATTAGACAGATTCTTGATCCCAACCCTATTTCTAGGGCAACTATGGAATCCATGAAAATGGACCATTGGTTTGGTAAGGACTATCATCCACCCAACCTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGAGTTCAGAGTCTCCCACCACTATAAATGCTTTTCAACTTATTGGAATGTCCTTATGCTTGGACCTTTCAGGTTTCTTTGAGGAAGAGGACATTTTGGAAAGGAAGATAAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTTAAGCAAATGGAGAATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGTTGAAAGTAATTAGAGAGGAAAGGGGTGAGAATGGTGTGGGCAGCATATTTTCAATATCAGCTCAGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGACGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTAAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCGAGTAA | 1905 | 40.94 | MRMGKYELGRTIGHGSFSKVKFAINLETGQPFAIKVLDKTKIIDLNFTNQVLASKSKIYMVLEYVNGGELYNRIASKGKVSEDEGRKIFQQLIDGVSYCHRKGVYHRDLKLENILVDARGNIKISDFGLSALLEHLRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDTNLCVLYQKILKGETQLPMWLSQGAQNLIRQILDPNPISRATMESMKMDHWFGKDYHPPNLYDEDQEDIYVAISTNQESSESPTTINAFQLIGMSLCLDLSGFFEEEDILERKIRFTTNHSTKEDILKQMENLVTDMGFLVQKKEGRLKVIREERGENGVGSIFSISAQIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFE | 634 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4620896 | 4638998 | + | CcPI632755_06g004230.1 | Cco06g0423 | 181023 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0423 | 634 | CDD | CIPK_C | 275 | 358 | - | - | |
Cco06g0423 | 634 | ProSiteProfiles | t-SNARE coiled-coil homology domain profile. | 510 | 572 | IPR000727 | - | |
Cco06g0423 | 634 | FunFam | novel plant SNARE 11 | 501 | 580 | - | - | |
Cco06g0423 | 634 | ProSiteProfiles | Protein kinase domain profile. | 6 | 240 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0423 | 634 | ProSiteProfiles | NAF domain profile. | 269 | 293 | IPR018451 | GO:0007165(InterPro) | |
Cco06g0423 | 634 | SUPERFAMILY | Protein kinase-like (PK-like) | 2 | 265 | IPR011009 | - | |
Cco06g0423 | 634 | Gene3D | - | 501 | 580 | - | - | |
Cco06g0423 | 634 | Gene3D | Kinase associated domain 1, KA1 | 268 | 369 | - | - | |
Cco06g0423 | 634 | PANTHER | CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED | 3 | 360 | - | GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER) | |
Cco06g0423 | 634 | Gene3D | Transferase(Phosphotransferase) domain 1 | 69 | 240 | - | - | |
Cco06g0423 | 634 | Gene3D | Phosphorylase Kinase; domain 1 | 1 | 49 | - | - | |
Cco06g0423 | 634 | Coils | Coil | 411 | 438 | - | - | |
Cco06g0423 | 634 | SMART | tSNARE_6 | 505 | 572 | IPR000727 | - | |
Cco06g0423 | 634 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 104 | 116 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0423 | 634 | ProSitePatterns | Protein kinases ATP-binding region signature. | 12 | 35 | IPR017441 | GO:0005524(InterPro) | |
Cco06g0423 | 634 | SMART | serkin_6 | 6 | 240 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0423 | 634 | SUPERFAMILY | SNARE fusion complex | 500 | 573 | - | - | |
Cco06g0423 | 634 | Pfam | Protein kinase domain | 51 | 240 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0423 | 634 | Gene3D | Phosphorylase Kinase; domain 1 | 51 | 68 | - | - | |
Cco06g0423 | 634 | Pfam | NAF domain | 271 | 331 | IPR004041 | GO:0007165(InterPro) | |
Cco06g0423 | 634 | CDD | SNARE_SNAP25N_23N_29N_SEC9N | 509 | 571 | IPR044766 | GO:0005484(InterPro)|GO:0031201(InterPro) | |
Cco06g0423 | 634 | FunFam | Non-specific serine/threonine protein kinase | 65 | 247 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco05g0821 | Cco-Chr5:6884682 | Cco06g0423 | Cco-Chr6:4620896 | 1.10E-127 | dispersed | |
Cco06g0423 | Cco-Chr6:4620896 | Cco10g0214 | Cco-Chr10:2230461 | 1.30E-86 | dispersed | |
Cco06g0419 | Cco-Chr6:4563671 | Cco06g0423 | Cco-Chr6:4620896 | 1.00E-17 | proximal | |
Cco06g0422 | Cco-Chr6:4602408 | Cco06g0423 | Cco-Chr6:4620896 | 2.00E-163 | tandem |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86904 | PF00069 | Pkinase | 1.50E-51 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0423 | K07198 | - | csv:116404531 | 560.066 |