Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0423 ATGCGAATGGGAAAATACGAGCTGGGAAGAACAATCGGGCATGGCAGTTTTAGTAAGGTCAAATTTGCTATAAACCTTGAAACTGGCCAACCTTTTGCTATCAAGGTCCTCGACAAGACCAAAATCATCGATCTCAATTTCACGAATCAGGTATTGGCCAGTAAAAGCAAAATTTATATGGTTCTTGAGTACGTGAACGGCGGAGAATTGTATAATAGAATAGCATCGAAAGGGAAGGTATCAGAAGACGAAGGCAGAAAAATCTTCCAACAGTTAATTGATGGTGTGAGTTACTGCCATAGGAAAGGTGTTTACCATAGGGATCTCAAGCTAGAGAACATACTTGTGGATGCCAGAGGAAATATCAAGATATCTGATTTTGGATTAAGTGCATTACTAGAGCATTTAAGGGACGATGGTCTGCTTCACACTACCTGTGGAAGCCCAAACTACGTGGCACCCGAGATTCTTGCTAATAGAGGCTATGATGGTGCGGCGTCAGATATTTGGTCTTGTGGTGTTATCTTGTTTGTAATTCTCACAGGATCACTCCCTTTCGATGACACAAATTTGTGTGTCCTTTACCAAAAGATCTTGAAAGGAGAAACTCAATTACCAATGTGGCTGTCACAAGGGGCCCAAAATTTAATTAGACAGATTCTTGATCCCAACCCTATTTCTAGGGCAACTATGGAATCCATGAAAATGGACCATTGGTTTGGTAAGGACTATCATCCACCCAACCTTTACGATGAAGATCAAGAGGATATATACGTGGCCATCTCAACGAATCAAGAGAGTTCAGAGTCTCCCACCACTATAAATGCTTTTCAACTTATTGGAATGTCCTTATGCTTGGACCTTTCAGGTTTCTTTGAGGAAGAGGACATTTTGGAAAGGAAGATAAGATTTACAACCAATCACTCTACAAAAGAAGATATCCTTAAGCAAATGGAGAATCTTGTAACAGATATGGGGTTTCTTGTCCAAAAGAAGGAAGGAAGGTTGAAAGTAATTAGAGAGGAAAGGGGTGAGAATGGTGTGGGCAGCATATTTTCAATATCAGCTCAGATCGTCGCAACTTACGCTTCCGGCGAAATGGCCAGCGGCTTGCAGATGAGTCCTCAGTTAGAGCAGATCCATGGGGAAATTCGTGACAATTTTCGGGCTCTTTCAAATGGGTTCCAAAGACTGGATAAGATCAAAGATTCCAGTAGACAAAGTAAGCAGTTGGAGGAGCTCACAGGAAAGATGAGGGAATGTAAAAGATTAATAAAAGATTTTGACCGTGAAATCAAGGAGGAAGAGAGTAAAAATCCACCGGAAGTGAATAAGCAGCTCAATGACGAGAAGCAATCAATGATCAAGGAGCTGAATTCATTTGTTGCATTGAGGAAAACGTATATGAATAGTCTTGGTAATAAAAGGGTTGAGCTATTTGATGAGGGAGGTGTAAGTGAACCTACAGCTGATGATAATGTTCGGATGGCCTCATCAATGACAAATCAAGAACTTATAGATGCTGGGAAGAAGACAATGGATGAAACCGATCAGGCTATTGAACGCACGCAAAAGGTGGTTGAACAAACTATTGAAGTGGGAACTCAAACTGCTGTTACATTAAAAGGCCAAACTGAGCAAATGGGCCGTATAGTAAATGAGCTTGACACAATTAATTTTTCAATTAAGAAGGCTTCCCAGCTTGTGAAAGAAATTGGCAGACAGGTTGCTACAGATAAATGCATCATGCTGTTTCTGTTCCTAATTGTCTGTGGAGTAATAGCCATTATTGTAGTAAAGATTGTGAACCCCAACAACAAAAACATCAGGGATATTCCTGGATTGGCACCTCCAGCTCCTGCAAGGAGGCTTTTGTATCTGAGGACACCTGAACATTTCGAGTAA 1905 40.94 MRMGKYELGRTIGHGSFSKVKFAINLETGQPFAIKVLDKTKIIDLNFTNQVLASKSKIYMVLEYVNGGELYNRIASKGKVSEDEGRKIFQQLIDGVSYCHRKGVYHRDLKLENILVDARGNIKISDFGLSALLEHLRDDGLLHTTCGSPNYVAPEILANRGYDGAASDIWSCGVILFVILTGSLPFDDTNLCVLYQKILKGETQLPMWLSQGAQNLIRQILDPNPISRATMESMKMDHWFGKDYHPPNLYDEDQEDIYVAISTNQESSESPTTINAFQLIGMSLCLDLSGFFEEEDILERKIRFTTNHSTKEDILKQMENLVTDMGFLVQKKEGRLKVIREERGENGVGSIFSISAQIVATYASGEMASGLQMSPQLEQIHGEIRDNFRALSNGFQRLDKIKDSSRQSKQLEELTGKMRECKRLIKDFDREIKEEESKNPPEVNKQLNDEKQSMIKELNSFVALRKTYMNSLGNKRVELFDEGGVSEPTADDNVRMASSMTNQELIDAGKKTMDETDQAIERTQKVVEQTIEVGTQTAVTLKGQTEQMGRIVNELDTINFSIKKASQLVKEIGRQVATDKCIMLFLFLIVCGVIAIIVVKIVNPNNKNIRDIPGLAPPAPARRLLYLRTPEHFE 634
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4620896 4638998 + CcPI632755_06g004230.1 Cco06g0423 181023
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0423 634 CDD CIPK_C 275 358 - -
Cco06g0423 634 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 510 572 IPR000727 -
Cco06g0423 634 FunFam novel plant SNARE 11 501 580 - -
Cco06g0423 634 ProSiteProfiles Protein kinase domain profile. 6 240 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0423 634 ProSiteProfiles NAF domain profile. 269 293 IPR018451 GO:0007165(InterPro)
Cco06g0423 634 SUPERFAMILY Protein kinase-like (PK-like) 2 265 IPR011009 -
Cco06g0423 634 Gene3D - 501 580 - -
Cco06g0423 634 Gene3D Kinase associated domain 1, KA1 268 369 - -
Cco06g0423 634 PANTHER CALCIUM/CALMODULIN-DEPENDENT PROTEIN KINASE KINASE-RELATED 3 360 - GO:0004674(PANTHER)|GO:0006468(PANTHER)|GO:0007165(PANTHER)
Cco06g0423 634 Gene3D Transferase(Phosphotransferase) domain 1 69 240 - -
Cco06g0423 634 Gene3D Phosphorylase Kinase; domain 1 1 49 - -
Cco06g0423 634 Coils Coil 411 438 - -
Cco06g0423 634 SMART tSNARE_6 505 572 IPR000727 -
Cco06g0423 634 ProSitePatterns Serine/Threonine protein kinases active-site signature. 104 116 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0423 634 ProSitePatterns Protein kinases ATP-binding region signature. 12 35 IPR017441 GO:0005524(InterPro)
Cco06g0423 634 SMART serkin_6 6 240 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0423 634 SUPERFAMILY SNARE fusion complex 500 573 - -
Cco06g0423 634 Pfam Protein kinase domain 51 240 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0423 634 Gene3D Phosphorylase Kinase; domain 1 51 68 - -
Cco06g0423 634 Pfam NAF domain 271 331 IPR004041 GO:0007165(InterPro)
Cco06g0423 634 CDD SNARE_SNAP25N_23N_29N_SEC9N 509 571 IPR044766 GO:0005484(InterPro)|GO:0031201(InterPro)
Cco06g0423 634 FunFam Non-specific serine/threonine protein kinase 65 247 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0821 Cco-Chr5:6884682 Cco06g0423 Cco-Chr6:4620896 1.10E-127 dispersed
Cco06g0423 Cco-Chr6:4620896 Cco10g0214 Cco-Chr10:2230461 1.30E-86 dispersed
Cco06g0419 Cco-Chr6:4563671 Cco06g0423 Cco-Chr6:4620896 1.00E-17 proximal
Cco06g0422 Cco-Chr6:4602408 Cco06g0423 Cco-Chr6:4620896 2.00E-163 tandem
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86904 PF00069 Pkinase 1.50E-51 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0423 K07198 - csv:116404531 560.066