Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0424 ATGTTAGAGGAAAAAGAAATGGCTCCTGATCTAAACACGACACTTTCCAAGAAGACGTTTGTTTTTGGTATGAAGGTATGGGTGTTTACTGGAATCCTGGTTGGGGTGTTTATTGTAATAGTCCTTGTAGTGCTATCAATATGTGTTACTTCACGAAGAAAATCTAGAAGGGTAAGTGGCATGCTTCCTCTCAACCGTATTTCCATTGCATCAAAGGAAATCAAGGAGATTGGAGTGGATCATGTTACACCAATCCAACAGGGTTCCCTCCCCCACGATGGATTCGACACAGAATCAGAAAAAGTTCTTCTATATTCAAACAAGGCATACAATTACAGCATATCAGGCTCAGTTGATCACACAGAGATATATGCTATTGGCTCTGGAGAAGGGAGCAAGGAAGCAAGTGTTCTGCAAAGACCCTCAGATTCAATACCACCGAATCCTTCGCCACTGGCTGGTCTGCCAGAATTCTCACAACTGGGATGGGGTCATTGGTTCACCTTAAGAGACCTGGAACTTGCAACAATGCATTTTTCAAACGATAATATAATTGGGGAGGGAGGATATGGAGTTGTTTATCGAGGTCATCTTATCAATGGGACACCTGTAGCTGTCAAAAAGCTTTTAAGTTTAGGACAAGCGGAAAGGGAATTCAGAGTGGAAGTAGAAGCGTTTGGGCATGTGCGGCATAAGAACTTAGTACGGCTCCTGGGATACTGCATTGAAGGAACGCACAGGATACTAGTATATGAGTACGTTGATAATGGAAATCTAGAGCAGTGGCTTCACGGAGCTCTATGTCAGCATGGATATCTCACTTGGGAAGCAAGAATCAAAATTCTCCTTGGTACTGCTAAGGCACTGGCATATTTGCATGAAGCAATCGAGCCAAAAATCGTCCATCGAGATATCAAGGCAAGCAACATATTGATTGATGATGAGTTTAATGCAAAGCTATCAGACTTCGGGCTGGCCAAATTACTCGGTGCTGGGAAGAGCCACATTACCACCAGAGTTATGGGTACGTTTGGATATGTGGCACCAGAATATGCCAAATCTGGGCTTCTAAATGAGAAGAGCGATGTTTATAGTTTTGGAGTGGTACTTTTGGAAGCAATTACTGGAAGAGACCCTGTTGATTATGGTCGCCCAACACATGAGGTAAATTTGGTGGATTGGCTAAAGATGATGGTAGGCAGCAAACGGTCAGAAGAGGTGGTAGATCCAATTATAGAGAGAAAGCCATCAATTAGTGAACTGAAGCGAGTTCTTTTGACTGCTTTGAGGTGTGTGGATCCAGATGCTGATAAGAGGCCTAAGATGAGCCAAGTTTCCCGCATGCTCGAGTCTGAAGAATATCCAATTCCTCGACAGGACCGGAGACCCAGAAAAAGCAATGCCATTGCGACCAAAATGGAGACTGAGAAACAGGAAAGAGGACCCAGACGACACAGATAA 1461 43.74 MLEEKEMAPDLNTTLSKKTFVFGMKVWVFTGILVGVFIVIVLVVLSICVTSRRKSRRVSGMLPLNRISIASKEIKEIGVDHVTPIQQGSLPHDGFDTESEKVLLYSNKAYNYSISGSVDHTEIYAIGSGEGSKEASVLQRPSDSIPPNPSPLAGLPEFSQLGWGHWFTLRDLELATMHFSNDNIIGEGGYGVVYRGHLINGTPVAVKKLLSLGQAEREFRVEVEAFGHVRHKNLVRLLGYCIEGTHRILVYEYVDNGNLEQWLHGALCQHGYLTWEARIKILLGTAKALAYLHEAIEPKIVHRDIKASNILIDDEFNAKLSDFGLAKLLGAGKSHITTRVMGTFGYVAPEYAKSGLLNEKSDVYSFGVVLLEAITGRDPVDYGRPTHEVNLVDWLKMMVGSKRSEEVVDPIIERKPSISELKRVLLTALRCVDPDADKRPKMSQVSRMLESEEYPIPRQDRRPRKSNAIATKMETEKQERGPRRHR 486
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4647797 4650556 + CcPI632755_06g004240.1 Cco06g0424 181024
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0424 486 FunFam serine/threonine-protein kinase PBS1-like 156 253 - -
Cco06g0424 486 FunFam Putative receptor-like serine/threonine-protein kinase 254 465 - -
Cco06g0424 486 SUPERFAMILY Protein kinase-like (PK-like) 163 460 IPR011009 -
Cco06g0424 486 PANTHER OS01G0323000 PROTEIN 7 476 IPR052232 -
Cco06g0424 486 MobiDBLite consensus disorder prediction 453 486 - -
Cco06g0424 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 300 312 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0424 486 CDD STKc_IRAK 185 450 - -
Cco06g0424 486 Gene3D Transferase(Phosphotransferase) domain 1 254 463 - -
Cco06g0424 486 ProSiteProfiles Protein kinase domain profile. 179 455 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0424 486 MobiDBLite consensus disorder prediction 436 486 - -
Cco06g0424 486 ProSitePatterns Protein kinases ATP-binding region signature. 185 208 IPR017441 GO:0005524(InterPro)
Cco06g0424 486 Pfam Protein kinase domain 181 445 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0424 486 Gene3D Phosphorylase Kinase; domain 1 160 253 - -
Cco06g0424 486 SMART serkin_6 179 449 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1968 Cco-Chr2:32629180 Cco06g0424 Cco-Chr6:4647797 3.80E-153 dispersed
Cco06g0424 Cco-Chr6:4647797 Cco09g2451 Cco-Chr9:38678000 1.30E-153 dispersed
Cco10g1172 Cco-Chr10:24350094 Cco06g0424 Cco-Chr6:4647797 3.30E-58 wgd
Cco02g1595 Cco-Chr2:28600451 Cco06g0424 Cco-Chr6:4647797 1.40E-141 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86905 PF00069 Pkinase 1.50E-47 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0424 - - - 0.0