Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0432 ATGGTAGCTGAAGCTGAGATCAAATGCCCCAAAACCGTTCCTCTCGTGAAAATCAACTATCATCTTTGCGTAACCGATGATCGCGATCTTGAGATCCATTTGCCGCACCCTTCTTCCTCACCTGTTTTTCCCGAGGCAGTTAGTTGTTCAGATATTGTTGAAGACGTGCATATAAAATCAACTGCCATAGATTTTGTTCCAAACATTCGATCTGGTAGCTATGCAGACATTGGAGCTCGAGATTCTATGGATGATGAACATGTCTGCATTGATGATCTGTCTGCCCACCTCAGATCTATGTTCAAATGTTCTATGCCTAATGGTTTCTATGCTGTTTTTGATGGTCATGGAGGGCCTCATGCAGCTGCTTTTGTCAAGAGGAATGCCATGAGATTATTCTTTGAAGATGCCGATTGGTTAAAAATACAGGACATTGATTCTATTTCTTTGAAAGATTTGGAGAACTCCCATCGCAAAGCATTTCAATTGGCAGATCTTGCCTTGGCTGATGAGCAGAGTGTTAGCAGCTCGTGCGGGACAACTGCGTTGACTGCGTTGGTCCTTGGGAGGCATTTGCTTGTTGCAAATGCCGGTGATTGCCGAGCAGTCCTATGTAGGAAAGGTGTAGCAGTCCCAATGTCTGAAGATCACAGGCCTTCTAATTTACTTGAGCTCAAGCGAGTGGAAGGGATGGGTGGTTTCGTAGATGATGGATATGTTAATGGCTATATTTCAGTAACCAGGACCTTGGGGGATTGGGATCTGAAATTGCTAAATGGCTCCTCATCACCTCTCATTGCTGAGCCACAAGTGGAGCATGTTATTTTAACAGGCGATGATGAATTCTTGATTCTCGGCTGTGATGGGATTTGGGACGTAATGTCGAGCCAATATGCTGTCAGTCTCGTTCGACGTGGGTTGAGGAAGCACAATGACCCTCATCAAAGTTCCCAAGAATTAGTCCAGGAAGCTTTGCGCCTCAACACATCAGATAATCTCACTGCAATTGTAATCTGCTTTTCTTCTCCGAATTGCGTTCCCCAGCAGCGAATATGCAAGTCGTGTAATCTGACCAAAGAGGCTACAAATAGATTGAGGAGCTTGTTAGAAGGTAACTGA 1119 44.59 MVAEAEIKCPKTVPLVKINYHLCVTDDRDLEIHLPHPSSSPVFPEAVSCSDIVEDVHIKSTAIDFVPNIRSGSYADIGARDSMDDEHVCIDDLSAHLRSMFKCSMPNGFYAVFDGHGGPHAAAFVKRNAMRLFFEDADWLKIQDIDSISLKDLENSHRKAFQLADLALADEQSVSSSCGTTALTALVLGRHLLVANAGDCRAVLCRKGVAVPMSEDHRPSNLLELKRVEGMGGFVDDGYVNGYISVTRTLGDWDLKLLNGSSSPLIAEPQVEHVILTGDDEFLILGCDGIWDVMSSQYAVSLVRRGLRKHNDPHQSSQELVQEALRLNTSDNLTAIVICFSSPNCVPQQRICKSCNLTKEATNRLRSLLEGN 372
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4750148 4755037 + CcPI632755_06g004320.1 Cco06g0432 181032
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0432 372 Pfam Protein phosphatase 2C 78 332 IPR001932 -
Cco06g0432 372 CDD PP2Cc 69 340 IPR001932 -
Cco06g0432 372 FunFam Probable protein phosphatase 2C 22 53 343 - -
Cco06g0432 372 SMART PP2C_SIG_2 85 340 IPR001932 -
Cco06g0432 372 ProSitePatterns PPM-type phosphatase domain signature. 109 117 IPR000222 GO:0043169(InterPro)
Cco06g0432 372 SUPERFAMILY PP2C-like 59 342 IPR036457 -
Cco06g0432 372 PANTHER PROTEIN PHOSPHATASE 2C 60 340 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco06g0432 372 SMART PP2C_4 60 338 IPR001932 -
Cco06g0432 372 ProSiteProfiles PPM-type phosphatase domain profile. 70 340 IPR001932 -
Cco06g0432 372 Gene3D - 53 344 IPR036457 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0432 Cco-Chr6:4750148 Cco09g0468 Cco-Chr9:4113846 9.80E-106 dispersed
Cco06g0432 Cco-Chr6:4750148 Cco05g0657 Cco-Chr5:5346639 2.70E-15 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59460 PF00481 PP2C 2.50E-64 CL0238 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0432 K14803 - csv:101207477 694.115