Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0435 ATGGTGAAGGTACGGATGAACACCGCCGATGTCGCCGCCGAGGTGAAATGCCTCAGAAGATTGATAGGCATGCGATGCGCCAATGTCTATGATCTCTCGCCCAAGACATACATGTTCAAGCTTATGAACAGTAGTGGAGTCACTGAATCAGGTGAGAGTGAGAAGGTGTTGCTGTTGATGGAAAGTGGAGTCAGATTGCATACGACTGAATATGTTCGAGACAAAAGCAATACTCCATCTGGGTTCACTCTCAAACTAAGAAAGCATATACGCACAAGAAGACTTGAGGATGTGCGGCAACTTGGATACGATAGGATAATCCTATTTCAGTTTGGGCTAGGTGCTAGTGCACACTATGTTATCCTGGAGCTGTATGCCCAGGGGAATATCATTCTTACGGATTCTGAATTTATGGTCTTAACTCTTCTTCGATCACACAGGGACGATAATAAGGGGGTAGCAATTATGTCACGGCATCGATATCCAACTGAAATTTCTCGAGTGTTTGAGAGGACGACAGCTGCAAAATTGCAGGAAGCACTCACTCTAAGTGACAATGTAGTTAATCTTACAGGGAATGCAAATAATGAAACAGATCCTCCAAAGCAGCAGCCAGGTAACCAAAAAGTGTCAAAGCCTTCTGTCTCAAGTAAAGCCCAAGGTGATGGCAGTCGAGCCAAACAGACTACTTTGAAAGCTGTTCTTGGGGAGGCACTGGGATATGGAACTGCACTATCTGAGCACATTATATTAAATGCCGGTCTGATTCCAAATATGAAACTCTGCAATGATAATAAACTTGATGATAATAATCTTCAGCTCTTAGTGCAAGCTGTTGCAAATTTTGAGGATTGGCTAGAGGATGTAATATTTGGTACTAGAGTTCCTGAAGGTTACATTTTGATGCAGAAGAAAGATGTTAAAAAAGAAGAATCTGAGGCTGCAACTGCTAGCGAGATCTATGATGAGTTCTGCCCAATTTTATTAAACCAATTCATGTCTAGAAAGTATACAAAGTTTGAGACATTTGATGCAGCTTTGGATGAATTCTACAGTAAAATTGAGAGTCAAAGGTCAGAACAGCAACAAAAGGCCAAGGAGAGCTCTGCAACTCAGAAACTTAATAAAATACGTATGGATCAGGGAAATCGTGTAGAGTTATTAAAACAAGAAGTTGACCATTCTGTCAAAATGGCAGAATTAATTGAATACAATTTAGAAGATGTAGATGCTGTTATATTAGCTGTCCGTGTTGCTCTTGCTAAAGGCATGAGCTGGGAGGATCTTGCACGCATGGTGAAAGAAGAAAAGAAATCTGGAAATCCAGTGGCGGGTCTTATTGACAAACTTAATCTTGAAAGGAATTGCATGACTTTGCTGCTGAGCAACAATCTTGATGAAATGGATGACGATGAAAAAACACAACCAGTTGATAAGGTAGAGGTGGATATATCACTTTCAGCTCATGCCAATGCTCGGCGATGGTATGAACTTAAGAAAAAACAAGAGAGCAAACAGGAGAAAACGATCACTGCACATGAAAAAGCTTTTAAAGCTGCTGAAAGAAAAACTCGTCTTCAACTTTCCCAGGAAAAAACAGTTGCCACGATATCCCATATGCGCAAAGTTCATTGGTTTGAGAAATTTAATTGGTTCATTAGCAGTGAGAATTATTTGGTTATCAGTGGCCGTGATGCTCAACAAAATGAGATGATAGTCAAACGTTACATGTCAAAGGGAGATCTGTATGTCCATGCTGATTTGCACGGAGCTTCTAGCACTGTGATTAAGAATCACAAGTCTGAACAACTAGTGCCTCCGCTCACACTGAACCAAGCAGGATGTTTTACGGTTTGTCACAGCCAGGCATGGGATTCAAAGATAGTCACTAGTGCCTGGTGGGTTTATCCTCACCAGGTTAGTAAAACTGCTCCCACAGGGGAATATCTTACAGTTGGGAGTTTTATGATTCGAGGAAAGAAGAATTTTCTTCCTCCACATCCTCTTATCATGGGTTTTGGATTGTTATTTCGCTTGGATGAGAGCTCCTTAGGTTCACATTTAAATGAAAGGAGGGTAAGAGGTGAGGAGGATGGAGTGAATGACGTTGAAGAAAATGAGCCTCTTGATGAAGAATCTGATACTGAATATGAGAAGAGGGAATCAGAAGAGGTATCCAATACATCTGCAAATTCATATAGACCAGTTATATCTGGACCTGAAGGCACAGAATCACTTGAAACTCCCATTGAAGGTAGAATGACATTGAACGGTGTCAATAAGGATATCCAACCTGATGTTAGAGATAACGTTTCCCTTGTCACACCACAACTTGAAGATCTCATTGATAAAGCTCTTGAGCTTGGTTCTGCTACTGCATCTAGCAAAAATTTTATATTAGAGACTTCTAAGGTTGATTTGGTCGATGAACCCCATCAACATGACAAAAATGCTGCAGGGAGAGAGAAACCCTACATCTCAAAAGCTGAAAGAAGGAAACTTAAGAAAGGTCAGAATAGCAGTTTTACAGACAGCAGCATCAAGCAGGAAAGTGAACAATCAAGAGATGTTGATGTTTCTTTGAATCATCCTCAAAACAAGGTTAACAATCCAAAGTCGGGTTCTGTGAAAATCAGCCGTGGTCAGAGGGGTAAACTCAAGAAAATGAAAGAAAAGTATGCTGATCAAGATGAAGAAGAAAGAGGCATCCGCATGGCTTTATTGGCTTCCTCAGGCAAGGTACCGAAAAATGAAGGGGCACAAAATGTGAAGGAAACAACTTCTGAAGTGAAGAAACCTGATGGAGATGTTGAAGAAGCTCCAAAGATATGCTATAAATGTAAGAAGCCGGGTCATTTGTCTCGTGATTGCCCAGAACATCCTGATAATCTTTCACATAATCACTCAAATGGTGCAACTCAAGACGATCGCCAAGTGGTCATGGATAATGATGCTGAATTGGACAAAATAACTATGGAAGAGGATGATATTCATGAAATAGGTGAAGAGGAGCGAGAAAAACTGAATGACGTCGATTACTTGACCGGAAATCCTTTGCCTACGGACATTCTTTTGTATGCTGTGCCGGTCTGTGGTCCGTACAATGCAGTGCAATCTTACAAATACCATGTCAAGATTGTTCCAGGCTCTCTAAAGAAAGGGAAAGCTGCAAAAACTGCCTTGAACCTGTTCACGCACATGCCTGAAGCGACAATAAGAGAGAAAGAACTGATTAAGGCATGCACAGACCCAGAGCTCGTCGCGGCCATCATTGGGAATGCTCGGGAAAGAAAAGCAGCAAGCAAGGAAGCTAGCTGTTGCTACTGTTGTCTTGAGCCGGAATACAAAACTCGCCGGAGCAGAAGGTGGAGAGGCGGAGATGAGCTCATCGGCGCATCAACCTTGTGGGTTGAACTCGAGACCAAAGAGCGCCTTAAACTCAAGCAACTCTTCAAGGAAGCTTATGAACGCTGCTGTACTGCCCCCATGGATGGCATCTCCTTCACTCTTGAAGACTTCCATGCCACTCTTGCAAATTACGACTTTGTTACTGAACTCGGAACCAAGGTTAAAGGTACTGTATTCTGTACCGATGCTAATGGGGCACTAGTTGATACTACTGCAAAGGGAACTGCATACTTGCCCACTCAAGAGGCATGCATTCTTAAAATAAGACATGTAGAAGAAGCAGGCATATATCCTGGTTTAGAAGAGGAGTTCGTAATTATTGCTGAACAGGAAGATGGCGATGGCTTAATTCTGAGCTTGAAAAGTGTCCAGTATGGCCTTGCTTGGGAGCGATGCAGACAACTCCAAGCTGAGGATATTGTTATCAAGGGTAAGGTTGTTGGTGCAACCAAAGGGGGATTAGTTGTTCTTGTGGAAGGTCTTAGAGGCTTTGTTCCTTTCTCTCAGATATCAGTAAAATCAACTGGAGAGGAGCTTCTTAATAAAGAGCTACGTCTGAAGTTTGTGGAGGTTGATGAGAAACTATCTCGGCTAGTCTTAAGTAATTCCAAGGCCATTGTCAGTAGTCAGGCAGAGCTACGAATTGGTTCAGTAGTTACTGGAACCGTGCAGTTTCTGAAACCATATGGAGCCTTTATTGACATCGGAGGAATTAATGGGCTTCTTCATGTTAGTCAAATCAGTCAAAATCACATATCAGATATTGCAACTGTTCTTCAACCAGGAGATATGCTTAAGGTCATGATTTTGAGCTATGACTGCAACAAAGGCCGTGTTAGTCTTTCTACCAAGAAATTGGAACCTACTCCTGGAGACATGATTCACAATCCAAAGCTTGTCTTTGAGAAGGCGGACGAGATGGCTCAGATATTCAGGCAAAGAATAGCTCAAGCAGAAACAATGGCTCGTGCAGGCCTTCTCGGATTTCAGCTTGAGAGTGGATAA 4413 42.13 MVKVRMNTADVAAEVKCLRRLIGMRCANVYDLSPKTYMFKLMNSSGVTESGESEKVLLLMESGVRLHTTEYVRDKSNTPSGFTLKLRKHIRTRRLEDVRQLGYDRIILFQFGLGASAHYVILELYAQGNIILTDSEFMVLTLLRSHRDDNKGVAIMSRHRYPTEISRVFERTTAAKLQEALTLSDNVVNLTGNANNETDPPKQQPGNQKVSKPSVSSKAQGDGSRAKQTTLKAVLGEALGYGTALSEHIILNAGLIPNMKLCNDNKLDDNNLQLLVQAVANFEDWLEDVIFGTRVPEGYILMQKKDVKKEESEAATASEIYDEFCPILLNQFMSRKYTKFETFDAALDEFYSKIESQRSEQQQKAKESSATQKLNKIRMDQGNRVELLKQEVDHSVKMAELIEYNLEDVDAVILAVRVALAKGMSWEDLARMVKEEKKSGNPVAGLIDKLNLERNCMTLLLSNNLDEMDDDEKTQPVDKVEVDISLSAHANARRWYELKKKQESKQEKTITAHEKAFKAAERKTRLQLSQEKTVATISHMRKVHWFEKFNWFISSENYLVISGRDAQQNEMIVKRYMSKGDLYVHADLHGASSTVIKNHKSEQLVPPLTLNQAGCFTVCHSQAWDSKIVTSAWWVYPHQVSKTAPTGEYLTVGSFMIRGKKNFLPPHPLIMGFGLLFRLDESSLGSHLNERRVRGEEDGVNDVEENEPLDEESDTEYEKRESEEVSNTSANSYRPVISGPEGTESLETPIEGRMTLNGVNKDIQPDVRDNVSLVTPQLEDLIDKALELGSATASSKNFILETSKVDLVDEPHQHDKNAAGREKPYISKAERRKLKKGQNSSFTDSSIKQESEQSRDVDVSLNHPQNKVNNPKSGSVKISRGQRGKLKKMKEKYADQDEEERGIRMALLASSGKVPKNEGAQNVKETTSEVKKPDGDVEEAPKICYKCKKPGHLSRDCPEHPDNLSHNHSNGATQDDRQVVMDNDAELDKITMEEDDIHEIGEEEREKLNDVDYLTGNPLPTDILLYAVPVCGPYNAVQSYKYHVKIVPGSLKKGKAAKTALNLFTHMPEATIREKELIKACTDPELVAAIIGNARERKAASKEASCCYCCLEPEYKTRRSRRWRGGDELIGASTLWVELETKERLKLKQLFKEAYERCCTAPMDGISFTLEDFHATLANYDFVTELGTKVKGTVFCTDANGALVDTTAKGTAYLPTQEACILKIRHVEEAGIYPGLEEEFVIIAEQEDGDGLILSLKSVQYGLAWERCRQLQAEDIVIKGKVVGATKGGLVVLVEGLRGFVPFSQISVKSTGEELLNKELRLKFVEVDEKLSRLVLSNSKAIVSSQAELRIGSVVTGTVQFLKPYGAFIDIGGINGLLHVSQISQNHISDIATVLQPGDMLKVMILSYDCNKGRVSLSTKKLEPTPGDMIHNPKLVFEKADEMAQIFRQRIAQAETMARAGLLGFQLESG 1470
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4770042 4786952 - CcPI632755_06g004350.1 Cco06g0435 181035

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0435 1470 ProSiteProfiles S1 domain profile. 1275 1339 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 MobiDBLite consensus disorder prediction 831 899 - -
Cco06g0435 1470 MobiDBLite consensus disorder prediction 190 227 - -
Cco06g0435 1470 MobiDBLite consensus disorder prediction 915 935 - -
Cco06g0435 1470 Pfam NFACT N-terminal and middle domains 21 161 - -
Cco06g0435 1470 Pfam NFACT N-terminal and middle domains 201 521 - -
Cco06g0435 1470 ProSiteProfiles Zinc finger CCHC-type profile. 944 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco06g0435 1470 PANTHER NUCLEAR EXPORT MEDIATOR FACTOR NEMF 1 1095 IPR051608 GO:0000049(PANTHER)|GO:0043023(PANTHER)|GO:0072344(PANTHER)|GO:1990112(PANTHER)|GO:1990116(PANTHER)
Cco06g0435 1470 Gene3D - 1267 1346 IPR012340 -
Cco06g0435 1470 SUPERFAMILY Nucleic acid-binding proteins 1345 1426 IPR012340 -
Cco06g0435 1470 SUPERFAMILY Nucleic acid-binding proteins 1270 1341 IPR012340 -
Cco06g0435 1470 SMART c2hcfinal6 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco06g0435 1470 FunFam nuclear export mediator factor Nemf 6 163 - -
Cco06g0435 1470 ProSiteProfiles S1 domain profile. 1187 1257 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 SUPERFAMILY Retrovirus zinc finger-like domains 932 965 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco06g0435 1470 CDD S1_RPS1_repeat_ec2_hs2 1275 1337 - -
Cco06g0435 1470 Gene3D ibrinogen binding protein from staphylococcus aureus domain 6 163 - -
Cco06g0435 1470 Pfam NFACT protein RNA binding domain 548 659 IPR008532 -
Cco06g0435 1470 SUPERFAMILY Nucleic acid-binding proteins 1185 1283 IPR012340 -
Cco06g0435 1470 Pfam S1 RNA binding domain 1349 1420 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 Pfam S1 RNA binding domain 1274 1337 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 ProSiteProfiles S1 domain profile. 1352 1420 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 SMART S1_6 1350 1420 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 SMART S1_6 1273 1339 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 SMART S1_6 1185 1257 IPR003029 GO:0003676(InterPro)
Cco06g0435 1470 MobiDBLite consensus disorder prediction 858 877 - -
Cco06g0435 1470 Gene3D - 936 982 - -
Cco06g0435 1470 Pfam Zinc knuckle 943 959 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Cco06g0435 1470 Gene3D - 1350 1423 IPR012340 -
Cco06g0435 1470 Pfam NFACT protein C-terminal domain 1005 1091 IPR021846 -
Cco06g0435 1470 FunFam RNA-binding transcriptional accessory protein 1335 1424 - -
Cco06g0435 1470 MobiDBLite consensus disorder prediction 690 747 - -
Cco06g0435 1470 CDD S1_RPS1_repeat_hs4 1352 1420 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0435 K24971 - - csv:101208866 1989.16
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0435 Cco-Chr6:4770042 Cco08g0344 Cco-Chr8:6829524 1.30E-116 dispersed
Cco05g0795 Cco-Chr5:6664856 Cco06g0435 Cco-Chr6:4770042 1.60E-144 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g26 Blo01g00045 . . Bda08g00319 . . . Bma05g01011 . Cmo17g00377 . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . Chy11g01596 . . . . . Bpe05g00809 . . . . . . . Cma17g00388 . Car17g00358 Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01512 . . Cme11g02101
Vvi5g199 Blo01g00045 . . . . . . . . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi5g212 . . . . . . . Bma05g01011 . . . . . . . . . . . . . . . . Cla06g00407 Cam06g0429 Cec06g0436 Cco06g0435 Clacu06g0415 Cmu06g0415 Cre06g1195 . . . . . . . . . . . . Bpe05g00809 . . . . . . . . . . Cpe12g00339 . Bhi12g01957 . . . . . Lcy12g0885 . . . . . . . Lsi09g01511 . . Cme11g02101
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009988 1 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 1 2 3 33