Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0439 ATGGCTCGTAAGGGTAATCAACAGAAAACGGGGTCAGACCGCTATGCATCAAACAGTAAAAAGAAAGGTTCAGACTTGCAGTCCAAGGGGCAGGGAAGAGCACGAGAGATAAAGGTATTTCCCGGAGAGGAACTACCTAATGACAACCAGCATGGTAGAGCCTCTGAGGAAGGCATGATGAATAGTGACTCTGGAGAGGGTATGAAGAATCTAAAAAAATCTGCAAAGTCCTTGAGAAAAGAAAAACAAGGAATTGAAGGACTTCATGCTCCAGAGGAACCAACACTCCCTCCCGAAGAATCTGGGAACTGCAATGGAAATAGTGGTGGTTCCAGTATAGGAGAACAATATGAGGGGTCTGCTGGTGATAAGGAGCAGGTTCACTTAGATGGTAGTTTCAACTTCTTTTTGAATGGAGAACACATCAGAAATGTGATGGATAATATTTTGGTGAAAAGTTTTATGGAATCTATGTCATCAATATTTGAAGCAACCCATGTGTTTCTGGAGCAACATAGACCTCTGTTTAATTCTATGAAGAACAATTTACTAAACACAAGTGACTATGTTGTAAAGAAGGTTATGACGGCATATCCCATTGTTCTGAAATGGATGATGCATTTTGCGAACATAATGCTTCTCTTATCAATTGTATGGTTGGACTGTGCCCTCAGGGGTATTGATTCCTTTATTCGTATGGGGACAACATCCTTCTTTGCAGTTTTATGGTTCTCCATTCTTTCAACAATTGCAATGGTTGGAATTCTTAAATTCCTTATGGTCTTGGTAATAGCTGCTTCCCTTGGAATTTTTGTTGGGTTTGCTTTTGCTATTTTGGTCATCGCCATCTCTGGAGCAGCTTTCCTTTGGTTTTATGGAAACTTTTGGACAACAATGCTGATTATCTTTCTTGGAGGATTGGCCTTTGTATTGAGCCACGAACGGGTTGCACTTTTGATTACCACTTTGTATTCGGTTTATTGTGCATGGGTATGCACTGGATGGCTTGGTTTGCTTTTGGGCCTGAATTTGTCATTTATTTCAAGCGATGCTCTGATTTATGTCCTAAAGAACAACATAAATGAGCATAGGAGATCGAACAGATATCCTGAACAAACAGCTGGGATGCAAGATCAGCCTGGCTTCTTTCATGATGATCCTATGCAAGCATCATCTTCTGAATTTAGTGGTACAGGTTTTGCTGCTGATCGGTGTCCAGGCACACCCTCAACTAGTGGAGCTGATTCTGAGATATCTTCCGAAGATGAAGTCGTTCGTTTGCTGAATTGTTCAGATCACTATGCAGCTTTAGGATTGTCCCGGTATGAGAATATAGATCCTTCCCTACTCAAGAAGGAGTATAGGAAAAAGGCAATGTTGGTCCATCCTGATAAAAATATGGGCAATGAAAAGGCTGCAGAAGCATTTAAGAAACTTCAAAATGCTTACGAGGTTTTGCTTGATTCGGTAAAGCGAAAAGCCTATGATGATGAGCTGAGAAGGGAAGAGCTGCTAAACATTTTCCGCAGGTTTCAGAGTGATTCACAGAAGAGTGGTCCATTTGCATTTTCGCGTTCAGCAACAAATAGAGAGGATCCTTTTGGTGAATCAAGACGAATAGCCTGCAAAAAGTGCAACAATTTTCATTTATGGATACACACTAGGAAATTGAAATCTCAAGCACGATGGTGCCAGGAATGCAAAGATTTTCATCAAGCAAAGGATGGGGATGGGTGGGTGGAGCAATCTTCCCAGCCTTTTCTTTTTGGATTGCTGCAGAAGGTAGATGCTCCTTGTGCATACGTATGTGCCGAGAGCCGAATATATGATGCTACTGGATGGTATATTTGTCAGGGAATGAGATGTCCAGCCAACACTCACAGGCCAAGTTTTCATGTAAACACGAATGTAACCTGTAAACAAAACACCACTAGAGGATCAAGTTCTAGCCAAAGAGGAGGCCAAATGCCTGCATCAAATATAGAAGAGAACATGACAGAAGAAGAGTTCTTTGAGTGGTTTCAGAATGCCATGCAGACAGGTGCTTTCGACAACGTCGGTGGCAGCACCACAGAGAGCCCGCCGGCTAAAGCAGGAGGAAGTTTTAATAAGAGTAGTAGCAACAGTGGCAGTGGTAACAAGAAAAAGAAGAAGGGAAAGAAGCAGTGGTGA 2172 42.03 MARKGNQQKTGSDRYASNSKKKGSDLQSKGQGRAREIKVFPGEELPNDNQHGRASEEGMMNSDSGEGMKNLKKSAKSLRKEKQGIEGLHAPEEPTLPPEESGNCNGNSGGSSIGEQYEGSAGDKEQVHLDGSFNFFLNGEHIRNVMDNILVKSFMESMSSIFEATHVFLEQHRPLFNSMKNNLLNTSDYVVKKVMTAYPIVLKWMMHFANIMLLLSIVWLDCALRGIDSFIRMGTTSFFAVLWFSILSTIAMVGILKFLMVLVIAASLGIFVGFAFAILVIAISGAAFLWFYGNFWTTMLIIFLGGLAFVLSHERVALLITTLYSVYCAWVCTGWLGLLLGLNLSFISSDALIYVLKNNINEHRRSNRYPEQTAGMQDQPGFFHDDPMQASSSEFSGTGFAADRCPGTPSTSGADSEISSEDEVVRLLNCSDHYAALGLSRYENIDPSLLKKEYRKKAMLVHPDKNMGNEKAAEAFKKLQNAYEVLLDSVKRKAYDDELRREELLNIFRRFQSDSQKSGPFAFSRSATNREDPFGESRRIACKKCNNFHLWIHTRKLKSQARWCQECKDFHQAKDGDGWVEQSSQPFLFGLLQKVDAPCAYVCAESRIYDATGWYICQGMRCPANTHRPSFHVNTNVTCKQNTTRGSSSSQRGGQMPASNIEENMTEEEFFEWFQNAMQTGAFDNVGGSTTESPPAKAGGSFNKSSSNSGSGNKKKKKGKKQW 723
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4846448 4852049 + CcPI632755_06g004390.1 Cco06g0439 181039

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0439 723 MobiDBLite consensus disorder prediction 682 710 - -
Cco06g0439 723 ProSiteProfiles dnaJ domain profile. 432 499 IPR001623 -
Cco06g0439 723 Pfam Cleavage inducing molecular chaperone 536 634 IPR032843 -
Cco06g0439 723 MobiDBLite consensus disorder prediction 682 723 - -
Cco06g0439 723 MobiDBLite consensus disorder prediction 100 115 - -
Cco06g0439 723 MobiDBLite consensus disorder prediction 15 42 - -
Cco06g0439 723 CDD DnaJ 432 488 IPR001623 -
Cco06g0439 723 PANTHER OS03G0832900 PROTEIN 1 723 - -
Cco06g0439 723 SMART dnaj_3 431 491 IPR001623 -
Cco06g0439 723 Coils Coil 68 88 - -
Cco06g0439 723 SUPERFAMILY Chaperone J-domain 409 495 IPR036869 -
Cco06g0439 723 Gene3D DnaJ domain 420 514 IPR036869 -
Cco06g0439 723 MobiDBLite consensus disorder prediction 69 88 - -
Cco06g0439 723 ProSitePatterns Nt-dnaJ domain signature. 476 495 IPR018253 -
Cco06g0439 723 Pfam DnaJ domain 432 496 IPR001623 -
Cco06g0439 723 PRINTS DnaJ domain signature 471 491 IPR001623 -
Cco06g0439 723 PRINTS DnaJ domain signature 454 469 IPR001623 -
Cco06g0439 723 MobiDBLite consensus disorder prediction 1 121 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0439 K09534 - - vvi:100246610 852.432
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0439 Cco-Chr6:4846448 Cco07g1142 Cco-Chr7:25132774 1.20E-83 dispersed
Cco06g0439 Cco-Chr6:4846448 Cco11g1504 Cco-Chr11:27861368 6.30E-08 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g34 Blo01g00041 . . Bda08g00322 . . . Bma05g01008 Cmo08g01259 Cmo17g00374 . . . . . . . . . . . . . . Cla06g00411 Cam06g0434 Cec06g0440 Cco06g0439 Clacu06g0420 Cmu06g0420 Cre06g1199 . . . . . Csa06g01853 Chy11g01588 . . . . . Bpe05g00806 . . . Sed04g3077 . . Cma08g01294 Cma17g00385 Car08g01159 Car17g00355 Cpe12g00336 Cpe17g00081 Bhi12g01953 Tan06g2785 Cmetu11g0566 . . . Lcy12g0870 . . . . . . . . . . Cme11g02097
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008621 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 2 1 1 1 1 0 1 1 1 1 35