Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0444 ATGCTCGCACAAAATATATTAAGATTGACATGCACTTTGTACTTGACAAGGAGCAAGACTCACTGTCCTCAAGAGGACTGCACAAATTTGGGTATTCGATTTCTCACTTCCGCAAAGCTGGAGAGGCACAGAGGAGACCGCTATGGCCCCGACCAAGATTCCCACCCTTATCGTCACTCTGCAGCTCCTTCTCGCTTCTCGGACTCCCCCGTGAACCATCACGACACTCGCCGGAGCCCCAGTAACTTCCGCAGCGGCGTTGCTGGAGCTAACCGTCGCCCTTTCGACAGCCCGCCTCGCTACTCTACTCCCGCTGCTGCTGGTTTTCGTCCCATGGGAACTGGTGGGGGGTTCCGTCCAATTCCTGGTCCTGGGGGTGGTGGTTTTGGGTCCAGTTTCCAGCCGCCACCTGTTGCAGGACAGAAACGAGGTTACCCTTTTGCCGGCCGTGGAAGTTCTCCAGATCACTCCGATGGAAGCAATTTTGCCAAGCTATTTGTTGGATCCGTTCCAAGGACAGCCACAGAAGAAATTATTCGCCCGTTGTTTGAAGAACATGGAAATGTGATTGAAGTAGCTTTGATAAAGGATAAGAGAACAGGCCAGCAACAAGGATGTTGTTTTGTAAAATATACTACCTCAGAAGAAGCTGATAGAGCAATTAGAAACTTGCACAATCAACATACCCTTCCTGGGGGAGCGGGCCCAATTCAAGTTAGATATGCTGATGGAGAGCGAGAGCGCCTTGGTGCAGTTGAGTACAAATTGTTTGTTGGTTCACTAAATAAACAAGCTTCAGAAAAAGAAGTCAAGGAAATTTTTTCTCCCTATGGAGTAGTTGAAGATGTTTACCTTATGCGGGATGAAATGAAACAGAGTCGTGGGTGTGGATTTGTGAAGTATTCACATAGGGATATGGCACTGGCGGCTATAAATGCTCTCAATGGAATCTTTACAATGAGAGGCTGTGATCAACCGTTAAGTGTCCGCTTTGCTGACCCAAAGAAGCCTAGATCTGGAGATTCAAGGGGCACTCCTGCATTTGGAGGTCCAGGTTTTGGTTCTCGCTTTCAAGCACCTGGGCCAAGACCAATGCCTAATTTTGGTGAAATTATGGGTGATCGAATTCCAATTGATGTACGAGGTTTCAGGCCACCTCTAGATGCTGGTATTCATCCCTTTGGGGGTCAGTTACCTCCTAGGTTGAGTGAAATGGGACCACCTTTGAATTTGGGTGGTCCTGCTAGTGGGTTTAGAGGTCCGAATCAAGGGTTAGTCAATCCAGCATCCTCAGCTTCTCAACAGAATTTTAATCAGTCTGCAAGCCAACATCAACCGCATGGCTTGCAAGCGTCGCCAGTGCTAAAGGCAGTTCAGTCACCGAAACAATTGCCACCTTCCAGTCAATTGCACCCTCATGCTCCTTCCTATTCTCAGACACATACATCTGCAGTACTAGCACAGCAGCATAATCAACCACAAAACTTCAATTCTTCTGGTCAATTGCCCTTTAGTCAACCTGCACCTTCCCATGAGTCTTCTGGCTTGGGTGCACAGTTGCCGCTATCTCAGGCTATGGTCCAGCAGGGTGCCTCATCTGCTGCAGCGACACATACTCCTTTGAGCATGAACTTACAATCCCATGCTGCTGCTCCTAATCAACAGCAGCTTCCTACTCCAATTCAGCCACGTCAGAATTCACCTTCCCAGTTAGCACACATGCTGTCACAACAAAAACAAACTCTACAGGCTACTTTTCAGACATCCCAGCAGGCATTCTCTCAGCTACAGCAGCTGATACAACCATCAAATCAAAGTTCAACATTGCAGCCGAGTTCCCAGACTATTAAGCAGCAGTCTCACTGGGCAGGGGCTGTGCCACATACAACTGCCAATGCCGCTTCTGCACCTTCAGATGAACATACATCTACAGTTCCTCCTGTAGCTATAAATACCCAAGCTGTAGCTCCTGTAAAATGCAATTGGACAGAGCACACTTCTCCTGATGGTTATAAATACTATTATAACAGTGTTACCGGTGAGAGCAAGTGGGAGAGACCTGAAGAGCTTTCAGTGATTGAGCAACAACAAAAGCCACCGGTACTCCAGCCTCATAACCAGCCACATCCTCAACTACTATCTACTACGCAACTCTCTCAAACTCCCCAGCCCCAGCTTCAAACTCAGTTCCAGACACAGATGCCCCACCCTCAGCCGCTACAGCAACCTTCATTCCATTCACAGGAAGGTGCTTATACACAATTGCAGCCAGCCAATAGCTCAGTAAATGATCCTACTCGCTTCCATCAGGGATTTCAGGCGACTCAAGAGTGGGCATGGAAGAATAAATAA 2352 48.04 MLAQNILRLTCTLYLTRSKTHCPQEDCTNLGIRFLTSAKLERHRGDRYGPDQDSHPYRHSAAPSRFSDSPVNHHDTRRSPSNFRSGVAGANRRPFDSPPRYSTPAAAGFRPMGTGGGFRPIPGPGGGGFGSSFQPPPVAGQKRGYPFAGRGSSPDHSDGSNFAKLFVGSVPRTATEEIIRPLFEEHGNVIEVALIKDKRTGQQQGCCFVKYTTSEEADRAIRNLHNQHTLPGGAGPIQVRYADGERERLGAVEYKLFVGSLNKQASEKEVKEIFSPYGVVEDVYLMRDEMKQSRGCGFVKYSHRDMALAAINALNGIFTMRGCDQPLSVRFADPKKPRSGDSRGTPAFGGPGFGSRFQAPGPRPMPNFGEIMGDRIPIDVRGFRPPLDAGIHPFGGQLPPRLSEMGPPLNLGGPASGFRGPNQGLVNPASSASQQNFNQSASQHQPHGLQASPVLKAVQSPKQLPPSSQLHPHAPSYSQTHTSAVLAQQHNQPQNFNSSGQLPFSQPAPSHESSGLGAQLPLSQAMVQQGASSAAATHTPLSMNLQSHAAAPNQQQLPTPIQPRQNSPSQLAHMLSQQKQTLQATFQTSQQAFSQLQQLIQPSNQSSTLQPSSQTIKQQSHWAGAVPHTTANAASAPSDEHTSTVPPVAINTQAVAPVKCNWTEHTSPDGYKYYYNSVTGESKWERPEELSVIEQQQKPPVLQPHNQPHPQLLSTTQLSQTPQPQLQTQFQTQMPHPQPLQQPSFHSQEGAYTQLQPANSSVNDPTRFHQGFQATQEWAWKNK 783
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4883614 4897711 + CcPI632755_06g004440.1 Cco06g0444 181044

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0444 783 MobiDBLite consensus disorder prediction 43 160 - -
Cco06g0444 783 SUPERFAMILY RNA-binding domain, RBD 146 248 IPR035979 GO:0003676(InterPro)
Cco06g0444 783 Gene3D - 151 249 IPR012677 -
Cco06g0444 783 MobiDBLite consensus disorder prediction 547 578 - -
Cco06g0444 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 163 244 IPR000504 GO:0003723(InterPro)
Cco06g0444 783 Pfam RNA recognition motif 165 227 IPR000504 GO:0003723(InterPro)
Cco06g0444 783 Pfam RNA recognition motif 256 320 IPR000504 GO:0003723(InterPro)
Cco06g0444 783 Gene3D - 250 341 IPR012677 -
Cco06g0444 783 PANTHER TRANSFORMER-2-RELATED 253 346 - -
Cco06g0444 783 Gene3D - 658 700 - -
Cco06g0444 783 FunFam Flowering time control protein FCA 250 340 - -
Cco06g0444 783 CDD WW 659 689 IPR001202 GO:0005515(InterPro)
Cco06g0444 783 FunFam flowering time control protein FCA isoform X2 157 249 - -
Cco06g0444 783 MobiDBLite consensus disorder prediction 333 364 - -
Cco06g0444 783 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 254 334 IPR000504 GO:0003723(InterPro)
Cco06g0444 783 Pfam WW domain 660 687 IPR001202 GO:0005515(InterPro)
Cco06g0444 783 SMART ww_5 657 689 IPR001202 GO:0005515(InterPro)
Cco06g0444 783 ProSiteProfiles WW/rsp5/WWP domain profile. 656 689 IPR001202 GO:0005515(InterPro)
Cco06g0444 783 MobiDBLite consensus disorder prediction 423 449 - -
Cco06g0444 783 SUPERFAMILY WW domain 653 689 IPR036020 GO:0005515(InterPro)
Cco06g0444 783 SUPERFAMILY RNA-binding domain, RBD 254 359 IPR035979 GO:0003676(InterPro)
Cco06g0444 783 MobiDBLite consensus disorder prediction 700 783 - -
Cco06g0444 783 MobiDBLite consensus disorder prediction 391 516 - -
Cco06g0444 783 MobiDBLite consensus disorder prediction 461 516 - -
Cco06g0444 783 MobiDBLite consensus disorder prediction 603 623 - -
Cco06g0444 783 SMART rrm1_1 164 240 IPR000504 GO:0003723(InterPro)
Cco06g0444 783 SMART rrm1_1 255 330 IPR000504 GO:0003723(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0444 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0356 Cco-Chr5:2888135 Cco06g0444 Cco-Chr6:4883614 9.20E-13 dispersed
Cco06g0444 Cco-Chr6:4883614 Cco01g0430 Cco-Chr1:4278806 4.10E-13 dispersed
Cco09g0619 Cco-Chr9:5459850 Cco06g0444 Cco-Chr6:4883614 3.70E-41 transposed
Cco10g1146 Cco-Chr10:23918692 Cco06g0444 Cco-Chr6:4883614 2.30E-78 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g46 Blo01g00037 Blo12g00030 Bda03g01189 . Bpe04g01123 . Bma04g01118 Bma05g01000 . Cmo17g00369 . . . . . . . . . . . . . . Cla06g00417 Cam06g0439 Cec06g0445 Cco06g0444 Clacu06g0426 Cmu06g0425 Cre06g1204 . Cone15ag0721 . . . Csa06g01860 . . . . . . . . . . . . . . Cma17g00380 . Car17g00351 Cpe12g00332 Cpe17g00076 Bhi12g01943 . . . . . Lcy12g0865 . . . . . . . Lsi09g01506 . . Cme11g02092
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007086 1 1 2 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 1 2 1 37