Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0445 ATGGCTAAGTATCTGCTTTTCCCTCTTTGTCTAATAATGTTTGAGCTTATTGCACTCGCTTCAGCGAACATGCAAGTTTCATATGGAGGAGGATACGAAAACCAGCCAACGTTTGGCACGCCCCCTATCTGCCCGGAGGCAGAAGCCATCATCTTCTCTTGGATCCAAACCGCCATTGCCGAGGACCCCCGAATGGCAGCATCTTTGCTTCGACTCCATTTCCACGACTGCTTTGGGTGTGATGCTTCTGTTTTGCTGGATGACAATGAGAACTTTGTAGGTGAAAAGACAGCAGCTCCAAATGTGAACTCACTGAGGGGATTTGAAGTGATTGATGCTATAAAATCTGATATTGAATCTGTTTGCCCACAGACAGTTTCATGTGCTGACATTCTAGCAATTGCAGCCAGAGACTCTGTCGGACTATCTGGAGGGCCCTTTTGGAAAGTGGAATTTGGAAGACGAGATAGCATAAGTGCTAGCAAATCAGCAGCACTTAACAACATTCCGGGCCCGAACTCCACTGTAGCCACCCTAGTTTCTAAGTTCCAGAACCTTGGTCTTTCTCTCAGAGATATGGTTGCTCTCTCAGGGGGGCACACACTTGGAAAAGCAAGATGTGTTACATTCAGTTCTAGGCTGCAAGCCAACAGCGGCAGTCCAAATGAAGGAGCAAACCAAGAGTTTATTGAGTCACTAAAACAGCTCTGCTCGGTATCTGGTAGTAGCTCGACACTGGCACAGCTCGATGTTGTAACCCCAGCAACGTTTGACAACCAATATTACATTAATCTTCTATCTGGAGAGGGGTTACTCCAGTCTGATCATGTTCTTGTGACTGGGGACTACCAGACAAGGGAGATAGTTGAAACCTACGCCGCCGACCCAGTTGCCTTCTTTGAAGATTTCAAACAGTCAATGGTGAAGATGGGAAGCCTCAAACCACCTGCTGAAACACAGACCGTGATCCGAACTAATTGTCGAACTACAAACTCCCTTGAAGCATTGCTCATCTTATCTGTGGTTTGTGTACCTTACAAAGCTATTCTTCTCTGCCTTGGAACTTCAAGGCAGCAGGAGCCTAATATCTTCATTTCACAACTTAAATGGAAGATGCATGTAGATCCCATTGTTCCACTTCAATCTCCTGAAGACCAAATAGTTCTACCATAG 1173 45.87 MAKYLLFPLCLIMFELIALASANMQVSYGGGYENQPTFGTPPICPEAEAIIFSWIQTAIAEDPRMAASLLRLHFHDCFGCDASVLLDDNENFVGEKTAAPNVNSLRGFEVIDAIKSDIESVCPQTVSCADILAIAARDSVGLSGGPFWKVEFGRRDSISASKSAALNNIPGPNSTVATLVSKFQNLGLSLRDMVALSGGHTLGKARCVTFSSRLQANSGSPNEGANQEFIESLKQLCSVSGSSSTLAQLDVVTPATFDNQYYINLLSGEGLLQSDHVLVTGDYQTREIVETYAADPVAFFEDFKQSMVKMGSLKPPAETQTVIRTNCRTTNSLEALLILSVVCVPYKAILLCLGTSRQQEPNIFISQLKWKMHVDPIVPLQSPEDQIVLP 390
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4898251 4900084 - CcPI632755_06g004450.1 Cco06g0445 181045
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0445 390 Gene3D - 44 331 - -
Cco06g0445 390 FunFam Peroxidase 170 310 - -
Cco06g0445 390 ProSitePatterns Peroxidases proximal heme-ligand signature. 192 202 IPR019793 -
Cco06g0445 390 ProSiteProfiles Plant heme peroxidase family profile. 32 331 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 68 88 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 125 135 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 144 159 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 264 281 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 44 63 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 191 203 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 248 263 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 305 318 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Plant peroxidase signature 106 119 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 Pfam Peroxidase 54 295 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PANTHER PEROXIDASE 72-RELATED 42 329 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Haem peroxidase superfamily signature 144 156 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Haem peroxidase superfamily signature 250 265 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Haem peroxidase superfamily signature 66 80 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Haem peroxidase superfamily signature 126 143 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 PRINTS Haem peroxidase superfamily signature 192 207 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 CDD secretory_peroxidase 44 328 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco06g0445 390 SUPERFAMILY Heme-dependent peroxidases 43 331 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0445 390 ProSitePatterns Peroxidases active site signature. 66 77 IPR019794 GO:0004601(InterPro)
Cco06g0445 390 FunFam Peroxidase 41 182 - -
Cco06g0445 390 Gene3D Peroxidase, domain 2 170 311 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0445 Cco-Chr6:4898251 Cco09g1278 Cco-Chr9:13885720 3.40E-77 dispersed
Cco06g0445 Cco-Chr6:4898251 Cco07g0944 Cco-Chr7:21624347 2.70E-82 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0445 K00430 - csv:101205763 593.964