Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0446 | ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCACCGCCGCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTATATCAGCCGGCGCCGCCGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCAGAAACCACCACCAGCAATATACGTATGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGGGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGAAGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA | 978 | 48.36 | MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGAISAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRGFDPVFHSFGGEERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN | 325 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 4905637 | 4907044 | - | CcPI632755_06g004460.1 | Cco06g0446 | 181046 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0446 | 325 | MobiDBLite | consensus disorder prediction | 67 | 147 | - | - | |
Cco06g0446 | 325 | MobiDBLite | consensus disorder prediction | 1 | 26 | - | - | |
Cco06g0446 | 325 | PANTHER | WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED | 97 | 226 | IPR044810 | GO:0003700(InterPro) | |
Cco06g0446 | 325 | MobiDBLite | consensus disorder prediction | 92 | 115 | - | - | |
Cco06g0446 | 325 | FunFam | WRKY transcription factor 57 | 146 | 220 | - | - | |
Cco06g0446 | 325 | Gene3D | WRKY domain | 144 | 221 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g0446 | 325 | MobiDBLite | consensus disorder prediction | 71 | 91 | - | - | |
Cco06g0446 | 325 | Pfam | WRKY DNA -binding domain | 161 | 218 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g0446 | 325 | ProSiteProfiles | WRKY domain profile. | 155 | 220 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g0446 | 325 | SMART | WRKY_cls | 160 | 219 | IPR003657 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g0446 | 325 | SUPERFAMILY | WRKY DNA-binding domain | 152 | 220 | IPR036576 | GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
Cco06g0446 | 325 | MobiDBLite | consensus disorder prediction | 117 | 133 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco02g1967 | Cco-Chr2:32622667 | Cco06g0446 | Cco-Chr6:4905637 | 5.50E-38 | dispersed | |
Cco06g0446 | Cco-Chr6:4905637 | Cco09g2450 | Cco-Chr9:38670080 | 4.90E-37 | dispersed | |
Cco05g1560 | Cco-Chr5:19839707 | Cco06g0446 | Cco-Chr6:4905637 | 1.20E-29 | transposed | |
Cco08g1183 | Cco-Chr8:23597915 | Cco06g0446 | Cco-Chr6:4905637 | 1.90E-40 | transposed | |
Cco10g1145 | Cco-Chr10:23911845 | Cco06g0446 | Cco-Chr6:4905637 | 1.10E-43 | wgd | |
Cco05g0785 | Cco-Chr5:6559253 | Cco06g0446 | Cco-Chr6:4905637 | 1.40E-45 | wgd | |
Cco06g0446 | Cco-Chr6:4905637 | Cco09g0485 | Cco-Chr9:4277218 | 8.40E-37 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59461 | PF03106 | WRKY | 6.30E-27 | CL0274 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0446 | - | - | - | 0.0 |