Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0446 ATGGAGGAGGAGAAGAAGAAGGAAGAAGTTTTGAGAAATAGAGATCAGATGGGAAATTCTGGATTGTTATTCTCCGATGCGATTATTCCCAATAATAATAATATGTTCGATTTTCCATTCATCGACTCCACTGATTCTTCTTCTTCTTCTTTTAAGCCTTCCACTTTCTTGGATTTGTTAGCCACCCAAGATTACACCCCTTCTTTATTCGATCTTTTCTCTCCTCCGCCGCCGCCTCCTCCTCCTCCTCCACCGCCGCCCTCCTCCGCCGTGCCTGAGTCATCCGAAGTCCTCAATACTCCTCCCACTCCTAACTCCTCCTCCGTCTCTTGCTCCTCCACCGAACGCCTTCTCGACGCCGATGATGCCGATCGGGATAAATCGCCTTTCAACAAACAGTTGAAAGCAAAAAAGAAAAATCAAAAAAGGGGAAGAGAACCGAGATTTGCGTTCATGACAAAGAGCGAAGTGGATCATCTAGACGACGGTTACAGATGGCGAAAATACGGTCAAAAAGCCGTTAAAAACAGCCCTTATCCAAGAAGTTATTACCGTTGCACCACCGCCGGCTGCGGCGTCAAAAAACGAGTCGAACGATCCTCCGACGACCCTTCCGTCGTCGTCACCACTTACGAAGGCCAACACACTCATCAAAGTCCAATCATGCCACGTGGAGCTATATCAGCCGGCGCCGCCGCCTTCGCCTCACCCCAACCGCCGCTTGTTTTCCCACAGCCGCAATTATTCAGAAACCACCACCAGCAATATACGTATGCTCCGGCGCCGCCTGTGGACGTTGTCACGTGCGGCCGAGGGTTTGATCCCGTGTTTCATAGTTTTGGTGGTGAAGAACGTCGTCGTATTGATGGAATAACTTGTTCTAATTCTGATTCTTTCCAAGACCATGGCCTTCTACAAGATATGATCGTACCCTCCTCCAACTCCTTACAAATCCCAGAAGAAGATAAACAAAATTAA 978 48.36 MEEEKKKEEVLRNRDQMGNSGLLFSDAIIPNNNNMFDFPFIDSTDSSSSSFKPSTFLDLLATQDYTPSLFDLFSPPPPPPPPPPPPPSSAVPESSEVLNTPPTPNSSSVSCSSTERLLDADDADRDKSPFNKQLKAKKKNQKRGREPRFAFMTKSEVDHLDDGYRWRKYGQKAVKNSPYPRSYYRCTTAGCGVKKRVERSSDDPSVVVTTYEGQHTHQSPIMPRGAISAGAAAFASPQPPLVFPQPQLFRNHHQQYTYAPAPPVDVVTCGRGFDPVFHSFGGEERRRIDGITCSNSDSFQDHGLLQDMIVPSSNSLQIPEEDKQN 325
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4905637 4907044 - CcPI632755_06g004460.1 Cco06g0446 181046
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0446 325 MobiDBLite consensus disorder prediction 67 147 - -
Cco06g0446 325 MobiDBLite consensus disorder prediction 1 26 - -
Cco06g0446 325 PANTHER WRKY TRANSCRIPTION FACTOR PROTEIN 1-RELATED 97 226 IPR044810 GO:0003700(InterPro)
Cco06g0446 325 MobiDBLite consensus disorder prediction 92 115 - -
Cco06g0446 325 FunFam WRKY transcription factor 57 146 220 - -
Cco06g0446 325 Gene3D WRKY domain 144 221 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g0446 325 MobiDBLite consensus disorder prediction 71 91 - -
Cco06g0446 325 Pfam WRKY DNA -binding domain 161 218 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g0446 325 ProSiteProfiles WRKY domain profile. 155 220 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g0446 325 SMART WRKY_cls 160 219 IPR003657 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g0446 325 SUPERFAMILY WRKY DNA-binding domain 152 220 IPR036576 GO:0003700(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro)
Cco06g0446 325 MobiDBLite consensus disorder prediction 117 133 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1967 Cco-Chr2:32622667 Cco06g0446 Cco-Chr6:4905637 5.50E-38 dispersed
Cco06g0446 Cco-Chr6:4905637 Cco09g2450 Cco-Chr9:38670080 4.90E-37 dispersed
Cco05g1560 Cco-Chr5:19839707 Cco06g0446 Cco-Chr6:4905637 1.20E-29 transposed
Cco08g1183 Cco-Chr8:23597915 Cco06g0446 Cco-Chr6:4905637 1.90E-40 transposed
Cco10g1145 Cco-Chr10:23911845 Cco06g0446 Cco-Chr6:4905637 1.10E-43 wgd
Cco05g0785 Cco-Chr5:6559253 Cco06g0446 Cco-Chr6:4905637 1.40E-45 wgd
Cco06g0446 Cco-Chr6:4905637 Cco09g0485 Cco-Chr9:4277218 8.40E-37 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59461 PF03106 WRKY 6.30E-27 CL0274 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0446 - - - 0.0