Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0451 ATGCTCCGGGGATTCATGAATCTGCTCTCTCTTTGCTGGAAGCCGTTCGGGCGTCCTACTGATGATTTCACCTCTGGTGGTGTTATTGGGACCAATTGCGGTGCTAAAGACACCAAGGATAGCTTGCTTTGGTTCTATGATTATGGTAAGTATGCTTCCGGTGAATTCTCCATGGCTGTTGTTCAAGCCAACCAAGTTCTTGAGGACCAGAGCCAAATTGAATCTGGCCCTTTTGGTACTTTCGTCGGAATCTACGATGGTCATGGTGGCCCTGACGCTGCTCGTTACGTCTGTGATAACTTGTTTAGACGTTTCCAAGATGAGCAACGAGGAGTTGTGACTCGTGAAACCATTCTGAATGCTTTTCGTCGAACGGAGGAAGGGTTCATGGCTGTTGTGACAGAGTTGTGGAATACTCGACCCCAGATAGCAACAGTTGGGACATGCTGTCTAGTAGGGGTGATACACGAGCAGACACTCTACATTGCGAGTCTAGGAGATTCTCGTGCTGTGTTAGGGAAGAAAGTTGGCAACACTGGGGAGATTGCTGCCATTCAATTATCGACCGAGCATAATGCAAATCTTGAGGAAATCAGGGAAGAATTAAGCGCCATACATCATGATGATCCTCAAATCGTGGTTCAAAGGCATGGAGTTTGGAGAGTGAAAGGAATTATACAGGTTTCTAGATCCATTGGGGATGTCTATTTGAAACATGCTCAGTATAATAACGAAAGAATCAATGCTAAATTTAGGCTTCCTGAACCAATTGACAGGCCTATATTGACTGCTGTACCTACGATTATTGCTCACCCTCTTCATCAAAACGATTCTTTTCTCATATTTGCATCCGATGGACTTTGGGAACACCTAACCAATGAAAAAGCAGTGGAGATTGTCCATAATCATCCACGTGCAGGAAGTGCAAAAAGGCTTGTGAAGGCAGCCCTTCAAGAAGCAGCTCGAAAACGAGAGATGCGGTATTCGGATCTCCGAAAGATCGACAAGAAGGTTCGGCGTCATTTTCATGATGACATTAGTGTTATTGTTTTATTTTTCAACCACGATCTTATATCCAGAAGCAATGTCCTCCTAGATCAACCATTATCAGTGAGGCTTAAGATTCCAAACTTGCGAGTCAAATGCCGTGTAAAAGGTTTATAA 1164 44.24 MLRGFMNLLSLCWKPFGRPTDDFTSGGVIGTNCGAKDTKDSLLWFYDYGKYASGEFSMAVVQANQVLEDQSQIESGPFGTFVGIYDGHGGPDAARYVCDNLFRRFQDEQRGVVTRETILNAFRRTEEGFMAVVTELWNTRPQIATVGTCCLVGVIHEQTLYIASLGDSRAVLGKKVGNTGEIAAIQLSTEHNANLEEIREELSAIHHDDPQIVVQRHGVWRVKGIIQVSRSIGDVYLKHAQYNNERINAKFRLPEPIDRPILTAVPTIIAHPLHQNDSFLIFASDGLWEHLTNEKAVEIVHNHPRAGSAKRLVKAALQEAARKREMRYSDLRKIDKKVRRHFHDDISVIVLFFNHDLISRSNVLLDQPLSVRLKIPNLRVKCRVKGL 387
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 4974892 4979172 - CcPI632755_06g004510.1 Cco06g0451 181051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0451 387 PANTHER PROTEIN PHOSPHATASE 53 352 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
Cco06g0451 387 SMART PP2C_4 49 351 IPR001932 -
Cco06g0451 387 ProSiteProfiles PPM-type phosphatase domain profile. 52 353 IPR001932 -
Cco06g0451 387 SUPERFAMILY PP2C-like 64 354 IPR036457 -
Cco06g0451 387 Gene3D - 47 362 IPR036457 -
Cco06g0451 387 FunFam Probable protein phosphatase 2C 42 46 361 - -
Cco06g0451 387 ProSitePatterns PPM-type phosphatase domain signature. 81 89 IPR000222 GO:0043169(InterPro)
Cco06g0451 387 CDD PP2Cc 56 353 IPR001932 -
Cco06g0451 387 Pfam Protein phosphatase 2C 80 320 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0451 Cco-Chr6:4974892 Cco10g0049 Cco-Chr10:526326 2.00E-117 dispersed
Cco06g0451 Cco-Chr6:4974892 Cco04g1830 Cco-Chr4:33120802 1.20E-117 transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0451 K01102 - csv:101207284 707.597