Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0454 ATGATTGGGCTTTTGAACGCTCACTCCAAATTTGGGCTTACGCCTGGGCTCGCTCTACTTTTTGTGGCTGCAGTTGGGCTTTCGTCAAGTATTGGGCTTACATTTGGGCCTGGGCGCCGATTTCCTCTCTACTCTCAGTGGAGGACGAGTTGGAAATTGGAGAAAATGGAAGCCGGAGATGATGGAGTCGAGAGGCTGGTTGATTCGAAGGATATGCAGCAACAAAGCAAAGCCTTCGATAAGCTCACTGATCGCGTTGAAGACCGTCAACTCGATTCCACTCGTGTTCAAGAGGCAATGGCATCTATTGCTGCATCGGCCGAAGCCGATTGGAACGCCATGATGTTGAGAGAGAAAGAGCTTGCTGCTGTCAAGATAAATGCAGCTGATGTCGACATAATCGCAAATGAACTCGAGTTGGACAAGAAGGTCGCCGAGAGAACGTTGCGAGAGCACAAAGGCGACGCTGTTGCTGCTATACGGTATTTACTACGTTAA 498 49.4 MIGLLNAHSKFGLTPGLALLFVAAVGLSSSIGLTFGPGRRFPLYSQWRTSWKLEKMEAGDDGVERLVDSKDMQQQSKAFDKLTDRVEDRQLDSTRVQEAMASIAASAEADWNAMMLREKELAAVKINAADVDIIANELELDKKVAERTLREHKGDAVAAIRYLLR 165
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5010730 5012703 + CcPI632755_06g004540.1 Cco06g0454 181054

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0454 165 Pfam HYPK UBA domain 124 164 IPR044034 -
Cco06g0454 165 PANTHER HUNTINGTIN-INTERACTING PROTEIN K FAMILY MEMBER 59 165 IPR052617 GO:0043066(PANTHER)|GO:0050821(PANTHER)
Cco06g0454 165 CDD UBA_HYPK 124 164 IPR038922 -
Cco06g0454 165 Coils Coil 135 155 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0454 - - - - 0.0
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g61 . . . . . . . . Cmo08g01245 Cmo17g00360 . . . . . . . . . . . . . . Cla06g00426 Cam06g0448 Cec06g0455 Cco06g0454 Clacu06g0435 Cmu06g0436 Cre06g1213 . . Cone7ag0099 Cone4ag0105 . Csa06g01869 Chy11g01574 . . Blo07g00143 Bda11g00499 . . Bpe13g00698 . Bma06g01465 Sed09g0311 . . . Cma17g00370 . Car17g00345 Cpe12g00325 . Bhi12g01936 Tan06g2768 Cmetu11g2114 . . . Lcy12g0853 . . . . . . . Lsi09g01494 . . Cme11g02083
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0011014 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 31