Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0455 ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGCGACCCTTTGAATGCCGCCGCCGGAGGCGGCGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCAGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGTGATTTGCGGCCATTTCAAGATTTGGAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGTAGATTCGAGCATGGTCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCGAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCAAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGTAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACGGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAACGAACCCTCGGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTATGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAACATCCCTCAAAAGGAAACATAA 2373 46.19 MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAAGGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLEIPLSVGSKQQDVDSSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNIPQKET 790
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5014812 5019383 - CcPI632755_06g004550.1 Cco06g0455 181055
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0455 790 FunFam PAS domain-containing protein tyrosine kinase 499 583 - -
Cco06g0455 790 NCBIfam PAS domain S-box protein 131 241 IPR000014 -
Cco06g0455 790 MobiDBLite consensus disorder prediction 770 790 - -
Cco06g0455 790 Pfam PAS fold 132 240 IPR013767 GO:0006355(InterPro)
Cco06g0455 790 SUPERFAMILY Protein kinase-like (PK-like) 489 756 IPR011009 -
Cco06g0455 790 PANTHER SERINE-THREONINE PROTEIN KINASE 65 761 IPR050167 GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER)
Cco06g0455 790 FunFam PAS domain-containing protein tyrosine kinase family protein 584 775 - -
Cco06g0455 790 MobiDBLite consensus disorder prediction 432 462 - -
Cco06g0455 790 SMART pas_2 131 198 IPR000014 -
Cco06g0455 790 Gene3D Phosphorylase Kinase; domain 1 499 583 - -
Cco06g0455 790 Gene3D Transferase(Phosphotransferase) domain 1 584 790 - -
Cco06g0455 790 Pfam Protein tyrosine and serine/threonine kinase 506 758 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 MobiDBLite consensus disorder prediction 35 72 - -
Cco06g0455 790 Gene3D PAS domain 141 243 - -
Cco06g0455 790 PRINTS Tyrosine kinase catalytic domain signature 685 707 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 PRINTS Tyrosine kinase catalytic domain signature 729 751 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 PRINTS Tyrosine kinase catalytic domain signature 619 637 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 PRINTS Tyrosine kinase catalytic domain signature 666 676 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 PRINTS Tyrosine kinase catalytic domain signature 580 593 IPR001245 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 ProSiteProfiles Protein kinase domain profile. 506 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 CDD STKc_MAP3K-like 512 758 - -
Cco06g0455 790 Coils Coil 6 26 - -
Cco06g0455 790 ProSiteProfiles PAS repeat profile. 129 200 IPR000014 -
Cco06g0455 790 MobiDBLite consensus disorder prediction 366 380 - -
Cco06g0455 790 SMART serkin_6 506 766 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 MobiDBLite consensus disorder prediction 88 122 - -
Cco06g0455 790 MobiDBLite consensus disorder prediction 341 355 - -
Cco06g0455 790 ProSitePatterns Serine/Threonine protein kinases active-site signature. 625 637 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0455 790 SUPERFAMILY PYP-like sensor domain (PAS domain) 133 240 IPR035965 -
Cco06g0455 790 MobiDBLite consensus disorder prediction 772 790 - -
Cco06g0455 790 MobiDBLite consensus disorder prediction 337 380 - -
Cco06g0455 790 CDD PAS 140 241 IPR000014 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0455 Cco-Chr6:5014812 Cco10g1925 Cco-Chr10:32842805 5.00E-91 dispersed
Cco06g0455 Cco-Chr6:5014812 Cco01g1657 Cco-Chr1:29324585 1.50E-92 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86907 PF07714 PK_Tyr_Ser-Thr 3.60E-69 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0455 - - - 0.0