Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0455 | ATGGGAACTCCACCAGCAGAGGAGCTTCTGAGGAAGATCCAAGAGCTGGAGGAGGGTCAAGCGCATCTCAAGAAAGAGATGTCCAAACTTCTTCTCTCTGGAACTGCCGCCGATTCCAACTCCGACCACCAAATCCACCACCACCATCATCACCATCAACGTTCTCAATCCATTTCACCTCAGCGTTCTAGATTTGCTACGGCTCGGAGAAGAGGTGGCGCTGCTGGAGGTTTAGACGCCGCCGCCGCCGCCTGGAAAAGAGGCTCTTCATCATTTCGACATTCTTCTCCACTTCAGAGAGAAAGTAGGACTCGCGACCCTTTGAATGCCGCCGCCGGAGGCGGCGGCGGCGGCGGCGGCTCTGGCCCCGCCGCTGTGAATTTCACCAACAAACAGTATCTGAATATCTTGCAGTCAATGGGACAGCCTGTTTATATTTTTGACCTTAATTATCATATAATTTACTGGAATCGAGCTGCTGAAATTGTATATGGGTATTCTGCGGCGGAGGCTCTTGGCCAGGACGCCATTGAGCTTCTAGTAGATCCTGAGGATTTCGCCATTGCAAACCATGTAATTCTTCGTGTCATGGCAGGTGAGAATTGGACTGGTCACTTACCTGTAAAGAACAAGATGGGGCAAAAATTTATAGTTGTTGCCGCCAACACTCCATTCTACGACGATGGTGCATTGGTTGGGATTATCTGTGTATCGAGTGATTTGCGGCCATTTCAAGATTTGGAGATTCCTCTATCAGTAGGTTCTAAACAGCAGGATGTAGATTCGAGCATGGTCCGATCACGAATCCCAGTTTCAGCTAAGCTTGGTCTTGATCCTCAGCAGCCTCTTCAAGTGGCAATTGCTTCGAAGTTATCCAACTTGGCATCAAAGGTAAGCAACAAAGTCAAGTTGAAAATTCGAACTGGAGAAAACAGTTCGGATCGTGAAGGTGGAAGTGGAGATAGTTATCACTCTGATCTTGGCTATCCAGAGGCAGTTCTTTGTGACCATCGGGACGATGCAAATTCAAGCGGAGCTAGCACGCCTCGAGGAGATTCCACGGCTCATGGTGCATTCTCTCAGGTTGAAGAGAAGTTATCTGGTAAACTGGTCAGGGATTCTGGTGATGAGGTTAAAGGAAAACCTACCATCCAGAAGATCTTATCCTCAAAGGCAGAAGAATGGATTGCCAAGAAAGGCTTATCCTGGCCTTGGAAAGGGACGGAGCAGGAAGGAGGATCTGAAACAAAGGCAGCCCGTTTTGTTTGGCCTTGGTTACAAATTGATCAAGAAGCCGAACCAGCTAATCAAAAGAGTTCCTCTATTTCTGGGAAACCAGAAATGCAGCAAAACGACAGTCATCGAGCAGTCAATAACGAGGCCTCAGGATCGTGGTCGTCGTTCAATGTTAACAGCACTAGCAGTGTCAGTAGCTGTGGAAGTACCAGTAGTAGTGCTGTCAACAAAGTTGACACAGATATAGACTGTTTGGATCATGAAATCTTGTGGGAAGACCTTACCATTGGGGAGCAAATAGGGCAAGGTTCTTGTGGAACTGTCTATCATGCGCTGTGGTATGGATCAGACGTTGCCGTCAAAGTGTTCTCCAAACAAGAGTATTCAGATGATGTGATTCTCTCCTTCAAACAGGAGGTATCCCTGATGAAAAAGCTTAGACACCCCAATATTCTTCTCTTTATGGGAGTTGTGACTTCACCTCAGCGTCTCTGCATTGTCACAGAATTCCTTCCACGTGGAAGTTTGTTTCGTTTACTACAGAGGAACACAGGCAAATTAGATTGGAGACGCCGTGTTCATATGGCTTTGGACATTGCGCGAGGCATGAACTATCTTCACCATTGCAATCCACCTATTATTCACCGAGATTTGAAATCATCGAACCTCTTAATCGATAAAAACTGGACTGTGAAGGTTGGAGATTTTGGTCTATCTCGGCTTAAGCATGAGACTTATCTAACAACTAAGACAGGAAAGGGCACGCCTCAATGGATGGCACCTGAAGTTCTTCGTAACGAACCCTCGGATGAGAAGTCTGACATATACAGTTTTGGAGTCATATTATGGGAGCTTGCAACTGAGAAGATCCCTTGGGAAAATCTCAATTCGATGCAGGTAATTGGTGCTGTTGGGTTCATGAACCAACGTCTTGAAATCCCCAAGGATGTGGATCCACAATGGGCTTCTATTATTGAGAGCTGCTGGCAAAGCGAACCTTCAAACCGGCCATCATTCCAAGTTCTGATAGAAAAGCTTAGAGAAATGCAGAGGAAGTTTGCTATGCAATTACAGGCAGCTCGTTCTGGTGGAGAGAATAATAATAATAATAATAACATCCCTCAAAAGGAAACATAA | 2373 | 46.19 | MGTPPAEELLRKIQELEEGQAHLKKEMSKLLLSGTAADSNSDHQIHHHHHHHQRSQSISPQRSRFATARRRGGAAGGLDAAAAAWKRGSSSFRHSSPLQRESRTRDPLNAAAGGGGGGGGSGPAAVNFTNKQYLNILQSMGQPVYIFDLNYHIIYWNRAAEIVYGYSAAEALGQDAIELLVDPEDFAIANHVILRVMAGENWTGHLPVKNKMGQKFIVVAANTPFYDDGALVGIICVSSDLRPFQDLEIPLSVGSKQQDVDSSMVRSRIPVSAKLGLDPQQPLQVAIASKLSNLASKVSNKVKLKIRTGENSSDREGGSGDSYHSDLGYPEAVLCDHRDDANSSGASTPRGDSTAHGAFSQVEEKLSGKLVRDSGDEVKGKPTIQKILSSKAEEWIAKKGLSWPWKGTEQEGGSETKAARFVWPWLQIDQEAEPANQKSSSISGKPEMQQNDSHRAVNNEASGSWSSFNVNSTSSVSSCGSTSSSAVNKVDTDIDCLDHEILWEDLTIGEQIGQGSCGTVYHALWYGSDVAVKVFSKQEYSDDVILSFKQEVSLMKKLRHPNILLFMGVVTSPQRLCIVTEFLPRGSLFRLLQRNTGKLDWRRRVHMALDIARGMNYLHHCNPPIIHRDLKSSNLLIDKNWTVKVGDFGLSRLKHETYLTTKTGKGTPQWMAPEVLRNEPSDEKSDIYSFGVILWELATEKIPWENLNSMQVIGAVGFMNQRLEIPKDVDPQWASIIESCWQSEPSNRPSFQVLIEKLREMQRKFAMQLQAARSGGENNNNNNNIPQKET | 790 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5014812 | 5019383 | - | CcPI632755_06g004550.1 | Cco06g0455 | 181055 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0455 | 790 | FunFam | PAS domain-containing protein tyrosine kinase | 499 | 583 | - | - | |
Cco06g0455 | 790 | NCBIfam | PAS domain S-box protein | 131 | 241 | IPR000014 | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 770 | 790 | - | - | |
Cco06g0455 | 790 | Pfam | PAS fold | 132 | 240 | IPR013767 | GO:0006355(InterPro) | |
Cco06g0455 | 790 | SUPERFAMILY | Protein kinase-like (PK-like) | 489 | 756 | IPR011009 | - | |
Cco06g0455 | 790 | PANTHER | SERINE-THREONINE PROTEIN KINASE | 65 | 761 | IPR050167 | GO:0004672(PANTHER)|GO:0005737(PANTHER)|GO:0007165(PANTHER) | |
Cco06g0455 | 790 | FunFam | PAS domain-containing protein tyrosine kinase family protein | 584 | 775 | - | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 432 | 462 | - | - | |
Cco06g0455 | 790 | SMART | pas_2 | 131 | 198 | IPR000014 | - | |
Cco06g0455 | 790 | Gene3D | Phosphorylase Kinase; domain 1 | 499 | 583 | - | - | |
Cco06g0455 | 790 | Gene3D | Transferase(Phosphotransferase) domain 1 | 584 | 790 | - | - | |
Cco06g0455 | 790 | Pfam | Protein tyrosine and serine/threonine kinase | 506 | 758 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 35 | 72 | - | - | |
Cco06g0455 | 790 | Gene3D | PAS domain | 141 | 243 | - | - | |
Cco06g0455 | 790 | PRINTS | Tyrosine kinase catalytic domain signature | 685 | 707 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | PRINTS | Tyrosine kinase catalytic domain signature | 729 | 751 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | PRINTS | Tyrosine kinase catalytic domain signature | 619 | 637 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | PRINTS | Tyrosine kinase catalytic domain signature | 666 | 676 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | PRINTS | Tyrosine kinase catalytic domain signature | 580 | 593 | IPR001245 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | ProSiteProfiles | Protein kinase domain profile. | 506 | 766 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | CDD | STKc_MAP3K-like | 512 | 758 | - | - | |
Cco06g0455 | 790 | Coils | Coil | 6 | 26 | - | - | |
Cco06g0455 | 790 | ProSiteProfiles | PAS repeat profile. | 129 | 200 | IPR000014 | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 366 | 380 | - | - | |
Cco06g0455 | 790 | SMART | serkin_6 | 506 | 766 | IPR000719 | GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 88 | 122 | - | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 341 | 355 | - | - | |
Cco06g0455 | 790 | ProSitePatterns | Serine/Threonine protein kinases active-site signature. | 625 | 637 | IPR008271 | GO:0004672(InterPro)|GO:0006468(InterPro) | |
Cco06g0455 | 790 | SUPERFAMILY | PYP-like sensor domain (PAS domain) | 133 | 240 | IPR035965 | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 772 | 790 | - | - | |
Cco06g0455 | 790 | MobiDBLite | consensus disorder prediction | 337 | 380 | - | - | |
Cco06g0455 | 790 | CDD | PAS | 140 | 241 | IPR000014 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0455 | Cco-Chr6:5014812 | Cco10g1925 | Cco-Chr10:32842805 | 5.00E-91 | dispersed | |
Cco06g0455 | Cco-Chr6:5014812 | Cco01g1657 | Cco-Chr1:29324585 | 1.50E-92 | transposed |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
86907 | PF07714 | PK_Tyr_Ser-Thr | 3.60E-69 | CL0016 | Cco | PK |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0455 | - | - | - | 0.0 |