Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0462 ATGGCATTTTGGTGGACTCTGCTTGTTCTTGGATTTGCTTACGCGATCTGTAGGTTACTTTTGATGCTTATCCCTCCGAATGTGCCTTCAATCGAAGTTGACGCATCTGACGTTATGGACGATGGGAATCAGACGCAGGAGAATAGCTACATCTACATTCCACCTAGGGTAAAGACACAACAGCAAGACAAGAGAGTCCAGTGTTACGAGCCTGCAACTATGAAATACCTGGGCTATTTTCCTGCATTGTCACGAGACGAGGTCAAGGAGCGTGTTGCTTCAGCCAGGAAAGCACAGAAAGAATGGGCCAAAAGTAGCTTCAAGCAAAGGCGTTTGCTTTTACGGATACTTTTGAAGTACATTATTGAACATCAAGAGCTCATTTGCGAGATCTCCTCCCGTGAAACTGGAAAAACAATAGTGGATGCTAATATGGGAGAAGTAATGGCGACATGTGAAAAGATTACTTGGCTTCTTTCAGAGGGTGAGAAATGGCTGAAGCCTGAGAGCCGATCATGTGGAAGGGCAACACTTCACAAGAAAGCCCGAGTAGAATTTCATCCCCTTGGAGTTATTGGGGCGATAGTCCCATGGAACTATCCATTCCATAACATTTTCAATCCAGTGCTTGCAGCAATCTTTGCAGGAAACGGCATTGTAGTTAAGGTTTCAGAACATGCAAGTTGGTCAGGATGCTTTTATATCAGGATTATCCAAGCTGCACTTGCTGCTGTTGGAGCTCCTGAGAGTTTGGTTGATGTGATAACAGGGTTTGCTGAAACAGGTGAAGCGCTAGTGTCTTCCGTAGACAAAATGATATTCGTTGGATCTACTGGTGTGGGTAGGATGATAATGAAAACTGCTGCTGAGACACTTATTCCAGTTACTCTTGAGTTGGGTGGAAAGGACGCATTTATCGTGTGTGAGGATGTAGATCTGGATCATGTGGTAAACGTTGCTCTCAGGGCTTCTATTACATCAAGTGGACATAATTGTACTGGAGCTGAGAGATTTTATGTCCACAAGAACATTTATTCTTCGTTTGTGGATAAAATATCAGAACGTGTAAAGGCTATTACAGTTGGTCCACCGTTAGCTGGGAAATATGATATGGGTGCCATCTGTACGCAAGAGCAGTCTGAGAAACTTCAAAGCCTTGTAAATGATGCCTTAGACAGAGGGGCTAAAATTGTTGCTCGTGGAACTTTTGGACATTTACCTGAAGGTGCCGTTGATCAATATTTCCCGCCTACCGTTATTGTTGATGTCAACCATACAATGAAGTTAATGCAAGAGGAGGCATTTGGACCAATCCTGCCTATAATGAAATTCACCACAGATGATGAGGCCGTGAATCTTGCAAATGATTCGAGGTTTGGGCTTGGTTGTGCTGTCTTCTCTGGCAGTCAGCGGCGTGCCAAGAACATTGCTTCGCGGATACATACTGGAAGTGTTGCAATTAATGACTTTGCCACAAATTATTTGTGTCAGTCCTTGCCATTTGGTGGCGTAAAAGAGAGTGGATTCGGTCGATTTGCGGGCGTTGAAGGATTACGAGCTTGTTGTCTCATTAAAGCAGTTGTTGAGGATAGGTGGTGGCCATACATTCAGACCAAGCATCCGAAGCCTCTTACGTATCCTGTTGCAGACAACGCCTTTGAGTTTCAGATGTCACTTGTCGAAGCAACGTATGGGCTGAACATATGGGATCGATTAAGAGCATTGGTCAATGTTCTGAAGATGCTGTCCGAGCAGAACACTCCGGCTAAAGACAACTCCACCATTGATGATGAAAGTAAGAGAGCTGATTGA 1812 44.32 MAFWWTLLVLGFAYAICRLLLMLIPPNVPSIEVDASDVMDDGNQTQENSYIYIPPRVKTQQQDKRVQCYEPATMKYLGYFPALSRDEVKERVASARKAQKEWAKSSFKQRRLLLRILLKYIIEHQELICEISSRETGKTIVDANMGEVMATCEKITWLLSEGEKWLKPESRSCGRATLHKKARVEFHPLGVIGAIVPWNYPFHNIFNPVLAAIFAGNGIVVKVSEHASWSGCFYIRIIQAALAAVGAPESLVDVITGFAETGEALVSSVDKMIFVGSTGVGRMIMKTAAETLIPVTLELGGKDAFIVCEDVDLDHVVNVALRASITSSGHNCTGAERFYVHKNIYSSFVDKISERVKAITVGPPLAGKYDMGAICTQEQSEKLQSLVNDALDRGAKIVARGTFGHLPEGAVDQYFPPTVIVDVNHTMKLMQEEAFGPILPIMKFTTDDEAVNLANDSRFGLGCAVFSGSQRRAKNIASRIHTGSVAINDFATNYLCQSLPFGGVKESGFGRFAGVEGLRACCLIKAVVEDRWWPYIQTKHPKPLTYPVADNAFEFQMSLVEATYGLNIWDRLRALVNVLKMLSEQNTPAKDNSTIDDESKRAD 603
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5080864 5089479 + CcPI632755_06g004620.1 Cco06g0462 181062

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0462 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 305 500 IPR016163 GO:0016620(InterPro)
Cco06g0462 603 ProSitePatterns Aldehyde dehydrogenases glutamic acid active site. 297 304 IPR029510 GO:0016491(InterPro)
Cco06g0462 603 PANTHER ALDEHYDE DEHYDROGENASE-RELATED 55 528 - -
Cco06g0462 603 Pfam Aldehyde dehydrogenase family 61 527 IPR015590 GO:0016491(InterPro)
Cco06g0462 603 CDD ALDH_F15-22 69 531 - -
Cco06g0462 603 SUPERFAMILY ALDH-like 50 529 IPR016161 GO:0016491(InterPro)
Cco06g0462 603 FunFam aldehyde dehydrogenase 22A1 65 317 - -
Cco06g0462 603 FunFam Aldehyde dehydrogenase A 301 495 - -
Cco06g0462 603 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 65 525 IPR016162 GO:0016491(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0462 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g1833 Cco-Chr2:31237711 Cco06g0462 Cco-Chr6:5080864 2.00E-45 dispersed
Cco06g0462 Cco-Chr6:5080864 Cco06g1169 Cco-Chr6:20784425 5.20E-56 dispersed
Cco06g0462 Cco-Chr6:5080864 Cco06g1872 Cco-Chr6:28937996 5.50E-58 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g75 . Blo12g00082 Bda03g01176 . Bpe04g01114 . Bma04g01129 . Cmo08g01242 Cmo17g00356 . . . . . . . . . . . . . . Cla06g00431 Cam06g0457 Cec06g0463 Cco06g0462 Clacu06g0444 Cmu06g0445 Cre06g1221 Cone14ag0722 Cone15ag0731 . . . Csa06g01741 Chy11g01565 . . . . . . . . . Sed04g3106 . . Cma08g01274 Cma17g00366 Car08g01144 Car17g00339 Cpe12g00317 Cpe17g00066 Bhi12g01925 Tan06g2751 Cmetu11g1721 Lac11g0932 Hepe03g0048 . Lcy12g0802 . . . . . . . . . . Cme11g02077
       

Syn-Families

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Cco06g1169 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G24503 69.8 1.6e-212 735.7
Cco02g1789 . 51 535 Aldehyde Dehydrogenase Gene Family AT3G24503 54.5 5.1e-158 554.7
Cco06g1894 . 67 551 Aldehyde Dehydrogenase Gene Family AT3G24503 54.1 1.7e-153 539.7
Cco06g1894 . 1 551 Aldehyde Dehydrogenase Gene Family AT3G48000 75.9 1.0e-249 859.4
Cco02g1789 . 1 535 Aldehyde Dehydrogenase Gene Family AT3G48000 75.1 8.2e-247 849.7
Cco06g1169 . 18 502 Aldehyde Dehydrogenase Gene Family AT3G48000 55.1 1.4e-161 566.6
Cco02g1789 . 1 385 Aldehyde Dehydrogenase Gene Family AT1G23800 77.2 1.6e-170 595.9
Cco06g1894 . 46 395 Aldehyde Dehydrogenase Gene Family AT1G23800 78.0 3.5e-165 578.2
Cco06g1169 . 18 346 Aldehyde Dehydrogenase Gene Family AT1G23800 55.0 2.9e-103 372.5
Cco11g1635 . 13 479 Aldehyde Dehydrogenase Gene Family AT4G34240 64.5 3.0e-180 628.6
Cco11g1636 . 7 484 Aldehyde Dehydrogenase Gene Family AT4G34240 63.2 6.9e-177 617.5
Cco11g1635 . 67 477 Aldehyde Dehydrogenase Gene Family AT1G44170 71.8 3.2e-177 618.2
Cco11g1636 . 72 482 Aldehyde Dehydrogenase Gene Family AT1G44170 72.3 1.2e-176 616.3
Cco02g2482 . 67 478 Aldehyde Dehydrogenase Gene Family AT1G44170 50.2 1.4e-116 416.8
Cco07g0963 . 21 499 Aldehyde Dehydrogenase Gene Family AT4G36250 63.5 1.1e-184 643.3
Cco02g2482 . 2 480 Aldehyde Dehydrogenase Gene Family AT4G36250 56.2 1.3e-158 556.6
Cco02g2007 . 37 654 Aldehyde Dehydrogenase Gene Family AT1G79440 60.9 5.7e-208 720.7
Cco09g1819 . 12 502 Aldehyde Dehydrogenase Gene Family AT2G14170 82.7 3.7e-240 827.8
Cco04g1587 . 262 696 Aldehyde Dehydrogenase Gene Family AT2G14170 68.5 4.6e-182 634.8
Cco06g1872 . 1 499 Aldehyde Dehydrogenase Gene Family AT1G74920 81.2 5.3e-248 853.6
Cco06g1872 . 1 502 Aldehyde Dehydrogenase Gene Family AT3G48170 80.7 6.3e-249 856.7
Cco02g1833 . 1 502 Aldehyde Dehydrogenase Gene Family AT2G24270 89.8 9.4e-269 922.5
Cco01g1581 . 21 555 Aldehyde Dehydrogenase Gene Family AT5G62530 78.4 5.5e-262 900.2
Cco06g0462 . 1 587 Aldehyde Dehydrogenase Gene Family AT3G66658 76.1 7.2e-276 946.4
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007085 1 1 1 1 1 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 2 2 1 37