Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0469 ATGTCTCTCCCCATGAGAGCTGACGTTCAAGGAAGCCTTGTTGGCTCGGAGATTCATGGCTTCCATACATTGCAAGATTTGGATGTTAAAAACATCAGGGAGGAAGCAAGGTCAAGATGGCTTCGCCCAAACGAAATCCATGCAATACTGTGTAACTACAAATATTTCACCATTCACGTCAAGCCAGTGAACTTGCCCAAAAGTGGAACCATTGTATTATTTGACCGCAAGATGCTTAGGAATTTTCGGAAAGATGGACATAATTGGAAGAAAAAAAAGGATGGAAAGACAGTAAAAGAAGCACATGAACACCTAAAAGTGGGTAATGTAGAAAGGATACATGTATACTATGCCCATGGCCTAGATAACCCAACCTTTGTTCGTCGGTGTTATTGGCTCCTTGATAAGACTCTTGAACACATTGTCCTCGTTCATTACCGTGAAACACAAGAGAGTTCTCCATCCACATCGATGAATTCAAATTCTGGTTCTGTCTCTAACCCATCAACTCCTTGGCTTTTATCGGAAGAACTTGATTCCAGAGCTACTCATGTTTATTCTGTTGGTGAAAATGAATTGCCAGAGCCTAGTGACACTACAACAGTCATGACTTATGAACAGCGACTTCATGAGATCAACACACTTGAGTGGGATGACCTTCTTGTGATGGACGAGCCTTTCAAACCTGCCATGCCCAAAGGAGGCAAACTTTCTTGCTTTGACCAACAGAACCAAGTCCCAATAAATGCAACCGACAATTTATTGGGGGAGATGTCTTCATTTAATAATCCAGTTGAGCCAACTGGGAGGGTCAACGGCAATATCAGTTTCACAGGAAGCGCCAATCTGTCGTTGGGTGGTCAAACAAATTTGAATGTAGAGAAGAGTGAATCCATTCCAGTTAACTCTTTGGACAGTTTGTTAAATGAGGGATTGCAAAGTCAGGACAGCTTTGGACGATGGATAAATGAAGTCATCACGGATTCTTCAGGTTCAGTGATTGATCCTGCTATTGAGCCATCCATTTCATCTGTTGATTCCGTTCACAATTCCTATTGTGATTCAACATTATATCACCATCAAACTTCGGCCATGGAGCAAATCTTTAACATAACTGATGTCTCACCTGCATGGGCCTTTTCAACAGAAAAAACAAAGATTCTAATTATTGGATATTTTCACAATGACTACGTACATCTTGCAAAGTCCAATATATTGGTTGTATGCGGTGATACTAGTGTTATTGTTGATTTTGTTCAACCTGGAGTTTTTCGCTGTCTGGTACCACCACATTCACCGGGATTAGTACATTTATATGTGAGCTTAGATGGCCACAAACCTATTAGTCAAGCTCTGAATTTTGAGTATCGTGCACCAAATTTACAAGTGCCTGTAGTTGCTTCAGAACAGATCCAAAAGTGGGAGGAGTTTCAAGTTCAGATGCGGCTTGCTCATCTGTTGTTCTCTACATCCAAGATCCTGAGCATCATGTCAACTAAATTGTCGTCCATTGCCCTACTCGAGGCCAAGAAACTTGCTGTCAAAACTTCTGACATTTCTGATAGTTGGATTTATTTGTTAAAGTCAATTACAGAAAATAGAACTCCATTTCAACAAGCAAGGGAAGGTGTTCTTGAGATCATATTGAGAGCCAGGTTGAGGGAATGGCTGATAGAAAGAGTTGCTGAAGGCTCAAAGAAAAGCACTGAGTTTGATGTAAATGGTCAAGGAGTAATCCATTTGTGTGCCATATTGGGATATACATGGGCCGTACATCCATTTGTATGGTCTGGTTTATCAATAAACTTCCGAGATAAATCTGGATGGACAGCTCTTCACTGGGCAGCTTATTATGGAAGGGAGAAAATGGTCGCTGTTCTTTTATCAGTGGGGGCGAGGCCAAACGTGGTCACTGATCCCACATCAAAGAACCCCGAGGGATGTACAGCTGCAGATCTTGCATCTATGAATGGTTACGATGGCTTAGCTGCGTATCTTTCTGAAAAGGCTCTGGTATCACACTTTAAAGAGATGAGCTTGGCTGGAAATGTTAGTGGCTCATTGGATACTAGTAGTACAATAACTGATGCCTCTGATTGCATCAGTGAGGAGCAGATGTATATGAAAGAAACATTAGCAGCTTACCGAACGGCAGCTGATGCAGCAGCACGCATACAAGCTGCATTCCGTGAACATTCTTTAAAGCAAAGAACTAATGCAATTGAATTCTCCACCCCTGAAGCTGAAGCACGCAGTATTATCGCAGCCATGAAAATTCAACATGCGTTCCGCAATTTTGAAACACGGAAAAAAATGGCAGCTGCGGCTCGTATCCAATACAGATTCCGCACTTGGAAGATCCGCAAAGACTTCCTTAATATGCGTCGTCAAACTATTAGAATTCAAGCTGCATTTAGAGGCTTCCAAGTGCGGAGGCAGTATCGCAAGATTGTTTGGTCGGTAGGAGTACTCGAGAAAGCTATACTGCGCTGGCGTCTTAAGAGAAAAGGTTTTCGTGGGCTGCAAGTTGCACCTGCTGAAGAGTTAGCAAAGCTGGAAGTTGGCATAGAAGAGGACTTCTACCGTGTATCTCAAAAACAAGCAGAAGAGCGAGTTGAGAGAGCTGTTATTCGGGTTCAGGCTATGTTTCGATCAAAGAAAGCACAGGAAGAGTATCGTAGGATGAGATTAACCTATGATGAAGCAGCGTTGGAATATGAAGAACTTTCACATCCTGATATAAATTGA 2748 42.18 MSLPMRADVQGSLVGSEIHGFHTLQDLDVKNIREEARSRWLRPNEIHAILCNYKYFTIHVKPVNLPKSGTIVLFDRKMLRNFRKDGHNWKKKKDGKTVKEAHEHLKVGNVERIHVYYAHGLDNPTFVRRCYWLLDKTLEHIVLVHYRETQESSPSTSMNSNSGSVSNPSTPWLLSEELDSRATHVYSVGENELPEPSDTTTVMTYEQRLHEINTLEWDDLLVMDEPFKPAMPKGGKLSCFDQQNQVPINATDNLLGEMSSFNNPVEPTGRVNGNISFTGSANLSLGGQTNLNVEKSESIPVNSLDSLLNEGLQSQDSFGRWINEVITDSSGSVIDPAIEPSISSVDSVHNSYCDSTLYHHQTSAMEQIFNITDVSPAWAFSTEKTKILIIGYFHNDYVHLAKSNILVVCGDTSVIVDFVQPGVFRCLVPPHSPGLVHLYVSLDGHKPISQALNFEYRAPNLQVPVVASEQIQKWEEFQVQMRLAHLLFSTSKILSIMSTKLSSIALLEAKKLAVKTSDISDSWIYLLKSITENRTPFQQAREGVLEIILRARLREWLIERVAEGSKKSTEFDVNGQGVIHLCAILGYTWAVHPFVWSGLSINFRDKSGWTALHWAAYYGREKMVAVLLSVGARPNVVTDPTSKNPEGCTAADLASMNGYDGLAAYLSEKALVSHFKEMSLAGNVSGSLDTSSTITDASDCISEEQMYMKETLAAYRTAADAAARIQAAFREHSLKQRTNAIEFSTPEAEARSIIAAMKIQHAFRNFETRKKMAAAARIQYRFRTWKIRKDFLNMRRQTIRIQAAFRGFQVRRQYRKIVWSVGVLEKAILRWRLKRKGFRGLQVAPAEELAKLEVGIEEDFYRVSQKQAEERVERAVIRVQAMFRSKKAQEEYRRMRLTYDEAALEYEELSHPDIN 915
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5157751 5168402 - CcPI632755_06g004690.1 Cco06g0469 181069
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0469 915 Pfam IQ calmodulin-binding motif 796 815 IPR000048 GO:0005515(InterPro)
Cco06g0469 915 ProSiteProfiles IQ motif profile. 718 747 - -
Cco06g0469 915 ProSiteProfiles IQ motif profile. 771 798 - -
Cco06g0469 915 SMART ANK_2a 646 675 IPR002110 GO:0005515(InterPro)
Cco06g0469 915 SMART ANK_2a 607 636 IPR002110 GO:0005515(InterPro)
Cco06g0469 915 Coils Coil 885 905 - -
Cco06g0469 915 ProSiteProfiles IQ motif profile. 755 781 - -
Cco06g0469 915 ProSiteProfiles Ankyrin repeat region circular profile. 607 636 - -
Cco06g0469 915 Pfam CG-1 domain 35 148 IPR005559 GO:0003677(InterPro)
Cco06g0469 915 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 715 821 IPR027417 -
Cco06g0469 915 CDD IPT_PCSR 370 457 - -
Cco06g0469 915 Gene3D - 772 818 - -
Cco06g0469 915 Pfam IPT/TIG domain 371 456 IPR002909 -
Cco06g0469 915 ProSiteProfiles Ankyrin repeat profile. 607 639 IPR002110 GO:0005515(InterPro)
Cco06g0469 915 Gene3D Immunoglobulins 364 460 IPR013783 -
Cco06g0469 915 ProSiteProfiles CG-1 DNA-binding domain profile. 29 155 IPR005559 GO:0003677(InterPro)
Cco06g0469 915 Pfam Ankyrin repeats (3 copies) 579 669 IPR002110 GO:0005515(InterPro)
Cco06g0469 915 PANTHER CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR CAMTA 279 901 - GO:0003690(PANTHER)|GO:0003712(PANTHER)|GO:0005634(PANTHER)|GO:0006357(PANTHER)
Cco06g0469 915 SMART iq_5 770 792 IPR000048 GO:0005515(InterPro)
Cco06g0469 915 SMART iq_5 793 815 IPR000048 GO:0005515(InterPro)
Cco06g0469 915 SMART iq_5 871 893 IPR000048 GO:0005515(InterPro)
Cco06g0469 915 SMART iq_5 717 739 IPR000048 GO:0005515(InterPro)
Cco06g0469 915 SUPERFAMILY Ankyrin repeat 569 669 IPR036770 -
Cco06g0469 915 ProSiteProfiles IQ motif profile. 873 901 - -
Cco06g0469 915 SUPERFAMILY E set domains 370 457 IPR014756 -
Cco06g0469 915 ProSiteProfiles IQ motif profile. 794 818 - -
Cco06g0469 915 Gene3D - 505 670 IPR036770 -
Cco06g0469 915 MobiDBLite consensus disorder prediction 149 169 - -
Cco06g0469 915 SMART CG_1_2 32 150 IPR005559 GO:0003677(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0469 Cco-Chr6:5157751 Cco10g0854 Cco-Chr10:17912168 1.00E-111 dispersed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59462 PF03859 CG-1 1.70E-45 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0469 K21596 - csv:101211298 1609.35