Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0479 | ATGGATTTGAGTGTTAAAACTATCTTTTGCTTGTGGGTATTTACGCCTTCTGGAATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTTCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAGTGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGCCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCGCATCAAAATAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATAGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCGTAGGCAAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTCAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGTTCAAAACTCAGAGAATCTCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCTTCAAATACACTTTGTTGTAACTTTAAAGATCAAAAGTCTTCCCAGATTAGATGACAGAGATTTCAATGCAAGTCTGAAGCAATCTTCCTCAGAATGCTCACACAGAAGATACAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCTCGGCTCCATTGTATTTGGAACCATTTAGGAGATTTCTCATCTCTCTAA | 2268 | 43.61 | MDLSVKTIFCLWVFTPSGMDLSHMKGSMPMPMPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLPEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQNNLNNSFINPQDPPYGSIASFNGIDLQTLSVTGQLSPQSLAALQATGLRRQTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTSIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSIAQNSLLDPVEFKTQRISDASYQTDLLSEDFGQDELLGVFLKQQLQIHFVVTLKIKSLPRLDDRDFNASLKQSSSECSHRRYKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLHCIWNHLGDFSSL | 755 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5285837 | 5290582 | - | CcPI632755_06g004790.1 | Cco06g0479 | 181079 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0479 | 755 | SUPERFAMILY | Homeodomain-like | 230 | 290 | IPR009057 | - | |
Cco06g0479 | 755 | SUPERFAMILY | CheY-like | 52 | 176 | IPR011006 | - | |
Cco06g0479 | 755 | CDD | REC_typeB_ARR-like | 55 | 169 | - | - | |
Cco06g0479 | 755 | Gene3D | - | 53 | 186 | - | - | |
Cco06g0479 | 755 | ProSiteProfiles | Response regulatory domain profile. | 54 | 169 | IPR001789 | GO:0000160(InterPro) | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 210 | 230 | - | - | |
Cco06g0479 | 755 | Pfam | Myb-like DNA-binding domain | 235 | 285 | IPR001005 | - | |
Cco06g0479 | 755 | SMART | REC_2 | 53 | 165 | IPR001789 | GO:0000160(InterPro) | |
Cco06g0479 | 755 | ProSiteProfiles | Myb-type HTH DNA-binding domain profile. | 232 | 289 | IPR017930 | - | |
Cco06g0479 | 755 | FunFam | Two-component response regulator | 229 | 292 | - | - | |
Cco06g0479 | 755 | PIRSF | RR_ARR_type-B | 34 | 672 | IPR017053 | GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro) | |
Cco06g0479 | 755 | PANTHER | TWO-COMPONENT RESPONSE REGULATOR | 48 | 366 | IPR045279 | GO:0009736(InterPro) | |
Cco06g0479 | 755 | NCBIfam | myb-like DNA-binding domain, SHAQKYF class | 233 | 286 | IPR006447 | GO:0003677(InterPro) | |
Cco06g0479 | 755 | Gene3D | - | 230 | 292 | - | - | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 462 | 478 | - | - | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 176 | 193 | - | - | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 176 | 230 | - | - | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 445 | 478 | - | - | |
Cco06g0479 | 755 | MobiDBLite | consensus disorder prediction | 195 | 209 | - | - | |
Cco06g0479 | 755 | Pfam | Response regulator receiver domain | 55 | 163 | IPR001789 | GO:0000160(InterPro) | |
Cco06g0479 | 755 | FunFam | Two-component response regulator | 53 | 190 | - | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0071 | Cco-Chr6:655925 | Cco06g0479 | Cco-Chr6:5285837 | 2.60E-41 | dispersed | |
Cco06g0479 | Cco-Chr6:5285837 | Cco06g1405 | Cco-Chr6:24515754 | 1.50E-81 | dispersed | |
Cco05g0940 | Cco-Chr5:8207718 | Cco06g0479 | Cco-Chr6:5285837 | 2.90E-38 | transposed | |
Cco05g0752 | Cco-Chr5:6184748 | Cco06g0479 | Cco-Chr6:5285837 | 3.60E-212 | wgd | |
Cco06g0479 | Cco-Chr6:5285837 | Cco09g0530 | Cco-Chr9:4635744 | 5.40E-10 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59466 | PF00072 | Response_reg | 7.30E-22 | CL0304 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0479 | K14491 | - | csv:101210138 | 1174.07 |