Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0479 ATGGATTTGAGTGTTAAAACTATCTTTTGCTTGTGGGTATTTACGCCTTCTGGAATGGATCTGAGCCACATGAAAGGATCGATGCCGATGCCGATGCCGACTTCAATTTCTGCTAGAAAATCCACAGATATGGTTTCTGATCAGTTTCCGGCCGGTCTTCGCGTCCTGGTTGTTGACGACGATCCTACCTGTCTCAGGATCTTGGAAAAGATGCTTCAGAATTGCTGCTATGCCGTGACGAAGTGCAACCGGGCGGAGATTGCGTTATCCATGCTTCGTGAGAACAAAAATGGTTATGATATTGTTTTAAGCGATGTGCATATGCCTGACATGGATGGATTCAAGCTTCTAGAGCAAGTTGGGCTGGAGATGGATTTGCCTGTTATCATGATGTCAGCTGATGATGGGAAGAATGTTGTGATGAAGGGAGTGATTCATGGTGCTTGTGATTACCTGATCAAACCCGTTCGGATAGAAGCACTCAGGAACATATGGCAACATGTAGTTCGAAAGAGAAAGACTGAATGGAAGGATTTAGAGCAATCCGGTAGCGTGGACGATGGAGATCGAGAGCAAAATCTGCCTGAAGGTGCAAATTATTCGTCTTCGGCATACGAAGGAAGTTGGAACAGCTCGAAGAGGAGGAGGGATGCTGAAGAAGAGCCCGAGGAGAGGGACGATACATCGACGTTAAAGAAGCCGAGGGTGGTATGGTCAGTTGAGCTCCATCAACAGTTTGTCGCTGCAGTTAATCAGCTAGGCATTGACAAGGCTGTCCCTAAGAAGATATTGGAGTTGATGAATGTTCCGGGGCTTACTAGAGAAAATGTTGCCAGTCATCTTCAGAAATATCGCTTATATCTTAGAAGGCTTAGTGGAGTATCACCGCATCAAAATAATTTGAACAATTCTTTTATCAACCCCCAAGACCCACCTTATGGGTCAATAGCCTCATTCAATGGGATTGATCTTCAAACGCTTTCGGTCACCGGCCAACTCTCGCCACAAAGTCTTGCTGCCCTCCAAGCAACGGGACTTCGTAGGCAAACCGCAAAATCTAGCATATCCATGGCTCTTGTTGATCAGAACAACATATTCAGTTTTGAAAACCCAAAATTGAGGTTTGTTGAGGACCAAACACAGCACCTAAATAACAGTAAACCAGTAAATTTGTTTCATGGGATTCCAACAAAAATGGAGCCAAAGCAGCTTGCCAATATGCAGCATCCTTCTGTGCAGTCTCAGGGGAACATAAATATGCAACTCAATATCAAGAGCGAACATGGTGGAACTCAACTAATGCATTTGTCTCAACACCAAACTGTGGGACAGACTCTAAGTAACTCTCCTGCTAGCCACTTAAGGAAGCCGATCGTATCAGGTAACGTTACGAGGGGAAATGGGACTGCTGATAATAGCCACAGATCTGGATACAACCTAGTTTCGCCAACATCGGTGATGGTGAACTATCCAATGAGCCAAACCACGGAATTGTCCAACAATTTTTCTCTTCAGAGTAATTCATCGGTATCTACCTTGACTTGTAAAGGGGTATTTCAAGAAGAGATTAGTTCAGATCTAAAAGTATCGGGCGGACTAATGTTGAGTTATGATGTTTTTAGTGACTTGCATCTGCAGAAATCCCATGACTGGGATTCTCAAAACGTAAGCACCTTGGCCTTTGGTAATTCTCACCATGGGAACTTCATACAGGATAGCTTTGATATCCCACCCTCCACTTCAATTCATCATGGTTTTCCTTCAAGCCAAACAAATGGACAAAACCAAAATTCGTCAGTCATTGGAAAGACTATCTTTTCCTTTTCGGATTCAACTCAACCCGAAAATCCACAAAGTATCGCCCAAAACTCGCTTCTCGATCCCGTGGAGTTCAAAACTCAGAGAATCTCAGATGCAAGCTATCAAACTGACCTCTTATCTGAGGACTTTGGCCAGGATGAACTTCTTGGCGTCTTTCTCAAACAACAGCTTCAAATACACTTTGTTGTAACTTTAAAGATCAAAAGTCTTCCCAGATTAGATGACAGAGATTTCAATGCAAGTCTGAAGCAATCTTCCTCAGAATGCTCACACAGAAGATACAAATCTTACTCCAACTTCGATTGGCGTTCAAAGCCTGAAGCGATTTATTTTAGGATGCGTGTGAAACTGTTTGTTTGTAACGGGCACATCGCTGGATTGTCGATGCAAGGCTCGGCTCGGCTCCATTGTATTTGGAACCATTTAGGAGATTTCTCATCTCTCTAA 2268 43.61 MDLSVKTIFCLWVFTPSGMDLSHMKGSMPMPMPTSISARKSTDMVSDQFPAGLRVLVVDDDPTCLRILEKMLQNCCYAVTKCNRAEIALSMLRENKNGYDIVLSDVHMPDMDGFKLLEQVGLEMDLPVIMMSADDGKNVVMKGVIHGACDYLIKPVRIEALRNIWQHVVRKRKTEWKDLEQSGSVDDGDREQNLPEGANYSSSAYEGSWNSSKRRRDAEEEPEERDDTSTLKKPRVVWSVELHQQFVAAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSPHQNNLNNSFINPQDPPYGSIASFNGIDLQTLSVTGQLSPQSLAALQATGLRRQTAKSSISMALVDQNNIFSFENPKLRFVEDQTQHLNNSKPVNLFHGIPTKMEPKQLANMQHPSVQSQGNINMQLNIKSEHGGTQLMHLSQHQTVGQTLSNSPASHLRKPIVSGNVTRGNGTADNSHRSGYNLVSPTSVMVNYPMSQTTELSNNFSLQSNSSVSTLTCKGVFQEEISSDLKVSGGLMLSYDVFSDLHLQKSHDWDSQNVSTLAFGNSHHGNFIQDSFDIPPSTSIHHGFPSSQTNGQNQNSSVIGKTIFSFSDSTQPENPQSIAQNSLLDPVEFKTQRISDASYQTDLLSEDFGQDELLGVFLKQQLQIHFVVTLKIKSLPRLDDRDFNASLKQSSSECSHRRYKSYSNFDWRSKPEAIYFRMRVKLFVCNGHIAGLSMQGSARLHCIWNHLGDFSSL 755
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5285837 5290582 - CcPI632755_06g004790.1 Cco06g0479 181079
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0479 755 SUPERFAMILY Homeodomain-like 230 290 IPR009057 -
Cco06g0479 755 SUPERFAMILY CheY-like 52 176 IPR011006 -
Cco06g0479 755 CDD REC_typeB_ARR-like 55 169 - -
Cco06g0479 755 Gene3D - 53 186 - -
Cco06g0479 755 ProSiteProfiles Response regulatory domain profile. 54 169 IPR001789 GO:0000160(InterPro)
Cco06g0479 755 MobiDBLite consensus disorder prediction 210 230 - -
Cco06g0479 755 Pfam Myb-like DNA-binding domain 235 285 IPR001005 -
Cco06g0479 755 SMART REC_2 53 165 IPR001789 GO:0000160(InterPro)
Cco06g0479 755 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 232 289 IPR017930 -
Cco06g0479 755 FunFam Two-component response regulator 229 292 - -
Cco06g0479 755 PIRSF RR_ARR_type-B 34 672 IPR017053 GO:0003677(InterPro)|GO:0003700(InterPro)|GO:0009736(InterPro)
Cco06g0479 755 PANTHER TWO-COMPONENT RESPONSE REGULATOR 48 366 IPR045279 GO:0009736(InterPro)
Cco06g0479 755 NCBIfam myb-like DNA-binding domain, SHAQKYF class 233 286 IPR006447 GO:0003677(InterPro)
Cco06g0479 755 Gene3D - 230 292 - -
Cco06g0479 755 MobiDBLite consensus disorder prediction 462 478 - -
Cco06g0479 755 MobiDBLite consensus disorder prediction 176 193 - -
Cco06g0479 755 MobiDBLite consensus disorder prediction 176 230 - -
Cco06g0479 755 MobiDBLite consensus disorder prediction 445 478 - -
Cco06g0479 755 MobiDBLite consensus disorder prediction 195 209 - -
Cco06g0479 755 Pfam Response regulator receiver domain 55 163 IPR001789 GO:0000160(InterPro)
Cco06g0479 755 FunFam Two-component response regulator 53 190 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0071 Cco-Chr6:655925 Cco06g0479 Cco-Chr6:5285837 2.60E-41 dispersed
Cco06g0479 Cco-Chr6:5285837 Cco06g1405 Cco-Chr6:24515754 1.50E-81 dispersed
Cco05g0940 Cco-Chr5:8207718 Cco06g0479 Cco-Chr6:5285837 2.90E-38 transposed
Cco05g0752 Cco-Chr5:6184748 Cco06g0479 Cco-Chr6:5285837 3.60E-212 wgd
Cco06g0479 Cco-Chr6:5285837 Cco09g0530 Cco-Chr9:4635744 5.40E-10 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59466 PF00072 Response_reg 7.30E-22 CL0304 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0479 K14491 - csv:101210138 1174.07