Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0490 ATGGTGCTTTTCCCGGAAGTTATTGAGGAAATGGTAAGAAATATGTCGATAAAGAAAAAGAATAATGAAGATCATGGCGGTAGAGAAGGGGGTCGAGAAGTAATGAGTAAAGAGGGAAAAAGAAACAAATCCATGATTTGTTTATCTGGAAGTGTTAAAACCACCAAGTTCGATGATATGGCTTCTGTATGCTCCAAGAGAGGAAATAAAGGAATTAATCAGGATTCTCTTGTTGTTTGGGAGGATTATGGCAACCAAGGAGATGTAGTTTTATGTGGAATGTTTGATGGGCATGGGCCTTGGGGCCACATGATTAGCAAACAAGTCAGAAAGTCACTACCTTCTCAATTACTTACCAATTGGCAACAAAACCTTTCCATGCAAACCGACCAAAACCATCTCTTTCCTTACAACCTATGGAAGCAATCTTGCTTAAAAACTTATGCCGCCATTGATGAAGAGCTCAAGCAACACCCTCGCATTGATTCTTTTTACAGTGGCACCACCGCTTTAATCCTTGTTAAACAGGGGCGACACCTTGTTGTTGCAAATGCTGGCGATTCACGAGCTGTGTTGGCGGTAACTTCTGGTGATGGCTGCTTGAAACCAATTCAACTCTCCGTCGATTTCCGACCTAATTTGCCTGAGGAAGCTGAAAGAATAAAACAATCGAAAGGGAGAGTGGTATGTTTAAAAGATGAACCTGGGGTTTATAGGGTGTGGACTCCCGATTCAGGGACTCCAGGATTGGCAATTTCTAGAGCTTTTGGCGATTATTGCACCAAACAGTACGGTCTCATTTCTGTGCCTGATGTAAACCATCGAATCATCACTACTTCAGATCAGTTTGTCATTGTCGCCACCGATGGGGTATGGGACGTCATGTCGAATCAAGAAGCGGTTCACATAGTTTCTTCAACACCAAATAGGGAAATGTCGGCCAAAAGGCTAGTGGATTGTGCTGCACGTGCATGGAAATCAAAGAAACGAGGGTTTGCAAGGGACGACATGTCGGCCATTTGCCTCTTTTTACATGCTTCACCCGCAGAAAATGATTTGAGTCTACAATCATTTACGCCATTGTTTGAGCTTCTGATTCGCGCGGGCAGTGCCATATCGTTTCGCTCTCAAATTCGCTCATCTCTAAGCCATTCCACTTCGCATCGCATCCTAATCCGAAGGAACTTCGAGATGAGTCCGATTTTGAATGAAGCAGAACCGAAGGAACTGCGAGATGAGTCTGATATTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTTTGGCGTTGAATCTCTCCTCTCAGAACCAAAGGAGCTGCGGGACGAGTCCGATTTTGAAGCAATCTTCTCCGACGGCGATTATATTTCCGTTTGTGGCTTTGGATCTCTCCTCTCTGAGAGGAGTGCGCGAAGTACTTTTCCTGATTTGATCAACTTTAGAGTTGCGAGATTGAACGATTTCAGACGCGTTTTCGGAATTATAGCTCCTATATTCTTTGAGCACGGCATTGCTAAATCTGAAACCAAGGAGATTTCAAGCTTATTTGCGGAGCCTTGTGAAGGAGAAAGTATCATCATTACGGTTTTCGAGATTAAGAAGTCTGAGATTCCAGCGTTCATACAGAGAGAGTTTGCGTTTCGATTTCTAGCTGTTCTTCCTGAAACATTAGACGGAAAGCTATATGATAAACCAGCGGTGCTTTGTTCTCGATCTACTGACGAGGAGTTTTTCCAAGTAAAATGCAAAGGAAACAAGGACATTTTTCTTCAGCATTATGGTCGTCATAATGTTGATAAGATCTGGAGAGATGATATCTTACCTTGTCGCGTCTATCTTCAACACTGTATTTTAGCTGCAAAAAACCTAGGTGACATTGCTTATAACAACTTTTTGGATCACACTTTTCTGGGAGATCGTTGTACAACCGTCCATGAATATTTGGTCGCTAATGGTTCATCTATTCTAGAAGAGGAGCCTCCAGAATCTCTCAAATTTCGATATGGCGGTTGA 2016 42.81 MVLFPEVIEEMVRNMSIKKKNNEDHGGREGGREVMSKEGKRNKSMICLSGSVKTTKFDDMASVCSKRGNKGINQDSLVVWEDYGNQGDVVLCGMFDGHGPWGHMISKQVRKSLPSQLLTNWQQNLSMQTDQNHLFPYNLWKQSCLKTYAAIDEELKQHPRIDSFYSGTTALILVKQGRHLVVANAGDSRAVLAVTSGDGCLKPIQLSVDFRPNLPEEAERIKQSKGRVVCLKDEPGVYRVWTPDSGTPGLAISRAFGDYCTKQYGLISVPDVNHRIITTSDQFVIVATDGVWDVMSNQEAVHIVSSTPNREMSAKRLVDCAARAWKSKKRGFARDDMSAICLFLHASPAENDLSLQSFTPLFELLIRAGSAISFRSQIRSSLSHSTSHRILIRRNFEMSPILNEAEPKELRDESDIEAIFSDGDYISVFGVESLLSEPKELRDESDFEAIFSDGDYISVCGFGSLLSERSARSTFPDLINFRVARLNDFRRVFGIIAPIFFEHGIAKSETKEISSLFAEPCEGESIIITVFEIKKSEIPAFIQREFAFRFLAVLPETLDGKLYDKPAVLCSRSTDEEFFQVKCKGNKDIFLQHYGRHNVDKIWRDDILPCRVYLQHCILAAKNLGDIAYNNFLDHTFLGDRCTTVHEYLVANGSSILEEEPPESLKFRYGG 671
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5377449 5387421 - CcPI632755_06g004900.1 Cco06g0490 181090
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0490 671 PANTHER OS05G0358400 PROTEIN 439 671 - -
Cco06g0490 671 SUPERFAMILY PP2C-like 60 345 IPR036457 -
Cco06g0490 671 CDD PP2Cc 60 344 IPR001932 -
Cco06g0490 671 Gene3D - 50 346 IPR036457 -
Cco06g0490 671 MobiDBLite consensus disorder prediction 18 40 - -
Cco06g0490 671 Pfam Protein phosphatase 2C 86 322 IPR001932 -
Cco06g0490 671 SMART PP2C_4 50 342 IPR001932 -
Cco06g0490 671 ProSiteProfiles PPM-type phosphatase domain profile. 60 344 IPR001932 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1823 Cco-Chr3:32872880 Cco06g0490 Cco-Chr6:5377449 2.20E-102 dispersed
Cco06g0490 Cco-Chr6:5377449 Cco10g0361 Cco-Chr10:4223389 5.30E-86 dispersed
Cco06g0489 Cco-Chr6:5369608 Cco06g0490 Cco-Chr6:5377449 1.30E-109 tandem
Cco02g1646 Cco-Chr2:29069297 Cco06g0490 Cco-Chr6:5377449 5.30E-120 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0490 - - - 0.0