Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0491 ATGGGATCGGAGCAATTGATGGCCGGAGGCGGGCCTCGATACGTTCAAATGCAATCGGAGCCGCCTTCGGCTTCGATGTCGTCGTTTTTTTCATTCCATCACGACGCTCCTGAGCCGACAAGGATTTTTGATGAGTTGCCGAAGGCCACAATCATTTCCGTCTCTCGACCTGATGCCGGCGATATCAGTCCCATGCTTCTTTCTTACACAATCGAGTGCCAGTACAAGCAGTTTAAATGGCGCATGCTGAAGAAAGCTTCCCATGTATTTTATTTGCATTTCGCATTAAAGAAACGGGCATTCATTGAGGAAATTCACGAGAAGCAAGAACAGGTTAAAGAATGGCTTCAAAATCTAGGAATAGGAGATCAAACAACAGTGCCCCAAGATGAGGATGGACCCGATGATGAGACCGATCCTCTGCATCATGATGAAAGTTCTAAAAATAGGGATGTTCCATCCAGTGCAGCCCTGCCAATTATTCGGCCTGCCTTAGGAAGGCAGCACTCTATGTCTGATAGAGCTAAGAATGCAATGCAAGGGTATCTGAATCACTTTTTGAGTAATATGGATATTGTCAACTCTCGAGAGGTTTGCAGGTTTTTGGAGGTCTCTAAGTTATCATTTTCACCAGAATACGGCCCAAAATTGAAAGAGGATTATGTCATGGTGAAGCACCTACCTAAAATTCCAAAGGAAGATGACTCTAGGAAATGTTGTCTATGCCCTTGGTTTGGTTGTTGTAATGACAATTGGCAAAAGGTGTGGGCTGTATTAAAACCTGGGTTTTTGGCCTTGTTGGGAGATCCTTTTGATACTCAACCAATGGATATTATAGTTTTTGATGTGCTACCTACTTCGGATGGCAATGGAGATGGACGAGTATCCCTGGCTAAGGAAATTAAAGAGCGAAATCCATTACGACATTCATTTAAGGTGACATGTGGAAATAGGAATATTAGGATTAGAGCAAAGAATGGATCCAAGGTTAAAGATTGGGTTGCTGCTATTAATGATGCTGGACTGAGGCCTCCTGAGGGCTGGTGTCATCCTCACCGTTTTGGCTCTTATGCTCCACCAAGAGGTTTGACTGAAGATGGTAGTAAGGCTCAGTGGTTCATTGATGGCCTAGCAGCTTTTGAAGCTATTGCCTTTTCCATTGAACGTGCAAAATCAGAGATTTTCATTTGTGGTTGGTGGCTTTGCCCAGAATTGTATCTGAGGCGTCCTTTTGTTTCAAATGCTTCATCTAGGCTTGATGCTTTACTTGAAGCAAAAGCTAAGGAAGGGGTTCAGATATACATTCTTCTCTACAAAGAGGTTGCCCTTGCTTTAAAAATTAACAGTGTTTATAGCAAGAGAAAACTTCTTGGCATCCATGAGAACGTGAGAGTATTGCGCTACCCCGACCACTTCTCCAGTGGTGTGTACTTATGGTCCCACCATGAAAAACTTGTCATTGTTGATTATCATATTTGCTTTATTGGAGGACTTGATTTATGCTTTGGTCGTTATGATACACCCGAACATAAAGTTGGTGATTGTCCTCCTTCAGTATGGCCTGGGAAGGACTACTATAATCCAAGGGAATCTGAGCCAAATTCATGGGAAGATACCATGAGAGATGAGTTGGATCGCAAGAAATATCCGCGCATGCCTTGGCATGATGTCCACTGTGCACTCTGGGGACCATCTTGTAGAGACATAGCCAGGCATTTTGTCCAACGCTGGAATTATGCTAAGAGAAATAAAGCCCCAAACGAGCAGGCAATTCCATTACTTATGCCTCAGCATCATATGGTCATTCCTCATTACTTGTGGAATAGCCGAGAGTTGGAGGTTGAAAAGAAGAGTTTTGACAATTCTAGAGGAACAACAGTGCAGGATTCGTTTTCTCGAGGATCATCTTTCCACGATATTCCATTGCTTTTGCCTCAAGAGGCTGATGGACAGGATGCTGAAAATGAAGGTCCAAAATTAAATGGACTGGAGCCCATTGCCAATCCCCTTGATCAGCCAAGTAAGGTCAGCAGCGGTCTCTCTTTTTCTTTCAGGAAGATCAAAGTTGAACCCATAGGACCCGATATGCCTCTGAAAGGCTTTGTTGATGATCTTGACCATTTGGATTCCCATGGAAAGTTGTCTGGAGATGGGAAAACACATCATCGTGTCAAAAGTTCGGATTTTGAGTGGTGGGAAACACAAGACAGAGGACATCATGGTGGCTTCACAGATGACTCTGGACAAGTTGGTCCATGTGCTTCATGTCGTTGCCAGGTAATCAGAAGCGTCAGTCAGTGGTCTGCTGGCACAAGCCGAACTGAAGAAAGCATTCACACTGCATACTGCTCTCTTATTGAGAAAGCAGAACATTTTATCTATATTGAGAATCAATTTTTTATATCAGGCCTCTCGGGAGACGATTCAATACGGAACCGTGTATTAGAAGCATTATACCGCCGCATAATGAGAGCCTACCGTGAAAAGAAGATTTTTAGGGTCATTATTGTCATACCACTCTTACCTGGATTTCAGGGGGGTCTGGACGATAGTGGTGCAGCATCGGTTAGAGCTATAATGCATTGGCAGTATCGAACTATATGTCGAGGACAGAATTCAATATTGCATAATCTTTACGATCTCCTTGGTTCAAAAGTTCATGATTATATATCATTTTATGGCCTCAGAGCTTATGGTAAACTCTTTGATGGTGGTCCTGTGGCTACAAGCCAGGTGTACGTGCATAGTAAAATTATGATTATTGATGATTGTATTGCTTTGATTGGATCGGCTAATATCAACGACAGAAGTTTACTTGGTAATAGGGATTCCGAGATTGCTATTGTTATTGAAGATAACGAACTCATCAATTCATATATGGGAGGACAACCATGGAAAGCAGGAAAATTTTGCTGGAGTCTACGTCTCTCTCTTTGGTCTGAACATCTCGGTCTTCGTCCCGGACAGATCAATCAAATAGTTGACCCGGTTGCTGATTCAACCTACAAGGATACGTGGATGGCAACTGCCAAGACAAACACAACAATATACCAAGATGTTTTTTCTTGCTTACCAAACGACCTCATAAATTCAAGAGCTGGACTGAGACAGAGCGTTACGATCTGGAAAGAGCGACTGGGACACACGACAATAGATTTAGGAATTGCCCCTGAGAAGCTTGAGTTTTATAAGAATGGAGAAATAGAAAGGATTGATCCAATGGAGAGATTAAGCTCAGTGAAGGGGCATCTTGTTTCCTTCCCACTGGAATTCCTCAGCAAAGAAGATTTAAGACCTGTGTTCAATGAGAGTGAGTATTATGCATCTCAAGTTTTTCATTAA 3342 42.79 MGSEQLMAGGGPRYVQMQSEPPSASMSSFFSFHHDAPEPTRIFDELPKATIISVSRPDAGDISPMLLSYTIECQYKQFKWRMLKKASHVFYLHFALKKRAFIEEIHEKQEQVKEWLQNLGIGDQTTVPQDEDGPDDETDPLHHDESSKNRDVPSSAALPIIRPALGRQHSMSDRAKNAMQGYLNHFLSNMDIVNSREVCRFLEVSKLSFSPEYGPKLKEDYVMVKHLPKIPKEDDSRKCCLCPWFGCCNDNWQKVWAVLKPGFLALLGDPFDTQPMDIIVFDVLPTSDGNGDGRVSLAKEIKERNPLRHSFKVTCGNRNIRIRAKNGSKVKDWVAAINDAGLRPPEGWCHPHRFGSYAPPRGLTEDGSKAQWFIDGLAAFEAIAFSIERAKSEIFICGWWLCPELYLRRPFVSNASSRLDALLEAKAKEGVQIYILLYKEVALALKINSVYSKRKLLGIHENVRVLRYPDHFSSGVYLWSHHEKLVIVDYHICFIGGLDLCFGRYDTPEHKVGDCPPSVWPGKDYYNPRESEPNSWEDTMRDELDRKKYPRMPWHDVHCALWGPSCRDIARHFVQRWNYAKRNKAPNEQAIPLLMPQHHMVIPHYLWNSRELEVEKKSFDNSRGTTVQDSFSRGSSFHDIPLLLPQEADGQDAENEGPKLNGLEPIANPLDQPSKVSSGLSFSFRKIKVEPIGPDMPLKGFVDDLDHLDSHGKLSGDGKTHHRVKSSDFEWWETQDRGHHGGFTDDSGQVGPCASCRCQVIRSVSQWSAGTSRTEESIHTAYCSLIEKAEHFIYIENQFFISGLSGDDSIRNRVLEALYRRIMRAYREKKIFRVIIVIPLLPGFQGGLDDSGAASVRAIMHWQYRTICRGQNSILHNLYDLLGSKVHDYISFYGLRAYGKLFDGGPVATSQVYVHSKIMIIDDCIALIGSANINDRSLLGNRDSEIAIVIEDNELINSYMGGQPWKAGKFCWSLRLSLWSEHLGLRPGQINQIVDPVADSTYKDTWMATAKTNTTIYQDVFSCLPNDLINSRAGLRQSVTIWKERLGHTTIDLGIAPEKLEFYKNGEIERIDPMERLSSVKGHLVSFPLEFLSKEDLRPVFNESEYYASQVFH 1113
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5394628 5404281 - CcPI632755_06g004910.1 Cco06g0491 181091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0491 1113 CDD PLDc_vPLD1_2_yPLD_like_2 770 954 - -
Cco06g0491 1113 PIRSF PLD_euk 55 628 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cco06g0491 1113 PIRSF PLD_euk 688 1113 IPR016555 GO:0004630(InterPro)|GO:0006654(InterPro)|GO:0035556(InterPro)
Cco06g0491 1113 Coils Coil 98 118 - -
Cco06g0491 1113 CDD PLDc_vPLD1_2_yPLD_like_1 370 515 - -
Cco06g0491 1113 Gene3D Endonuclease Chain A 743 967 - -
Cco06g0491 1113 ProSiteProfiles PH domain profile. 251 342 IPR001849 -
Cco06g0491 1113 SMART PH_update 216 344 IPR001849 -
Cco06g0491 1113 FunFam Phospholipase 744 964 - -
Cco06g0491 1113 SUPERFAMILY Phospholipase D/nuclease 322 596 - -
Cco06g0491 1113 SMART pld_4 910 937 IPR001736 GO:0003824(InterPro)
Cco06g0491 1113 SMART pld_4 477 504 IPR001736 GO:0003824(InterPro)
Cco06g0491 1113 Pfam Phospholipase D Active site motif 477 504 IPR001736 GO:0003824(InterPro)
Cco06g0491 1113 SUPERFAMILY Phospholipase D/nuclease 750 959 - -
Cco06g0491 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 477 504 IPR001736 GO:0003824(InterPro)
Cco06g0491 1113 SUPERFAMILY PH domain-like 248 340 - -
Cco06g0491 1113 Gene3D - 243 340 IPR011993 -
Cco06g0491 1113 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 910 937 IPR001736 GO:0003824(InterPro)
Cco06g0491 1113 Pfam PLD-like domain 911 959 IPR025202 -
Cco06g0491 1113 CDD PH_PLD 193 340 - -
Cco06g0491 1113 MobiDBLite consensus disorder prediction 122 153 - -
Cco06g0491 1113 PANTHER PHOSPHOLIPASE D 179 1094 IPR015679 GO:0004630(PANTHER)|GO:0005886(PANTHER)|GO:0009395(PANTHER)
Cco06g0491 1113 Gene3D Endonuclease Chain A 365 603 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0491 Cco-Chr6:5394628 Cco08g1583 Cco-Chr8:27393193 9.60E-40 dispersed
Cco02g1647 Cco-Chr2:29092268 Cco06g0491 Cco-Chr6:5394628 0.00E+00 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0491 K01115 - csv:101211856 2202.94