Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0494 ATGGCGTCCTCAGCCACTCGGCGCACTCTGCTCACTGTTCTTAGCCGAAGCCTCTCTTCTTCATCACCATCTTCTTCTTCCTTCTTCCTTTCATCTTCTATTTCTTCTCGCCTCCGATACGCTTTTCCTCTGCTCAACAGACACGATCAAATAATCCCTAATTCATTCAATCTTCCTATTCGATTCAAGGCTTCGGGATCCGGATACTCTCCCCTCAACGATCCTTCTCCGAACTGGAGCAATCGACCTCCAAAAGAGACGATACTCCTCGATGGCTGCGACTACGAACACTGGCTGATCGTGATGGAGTTTCCAAATGACCCAAAACTATCGGAGGAGGAGATGGTGAATTCCTATGTCAAAACACTAGCCGCTGTTGTCGGAAGTGAGGAAGAGGCGAAGAAGAAAATATACTCAGTCAGTACAACTACATATACTGGCTTTGGTGCCTTAATTTCTGAAGAGCTTTCTTACAAAGTGAAAGAATTGCCAGGTGTTCTATGGGTTTTACCAGATTCATATCTTGATGTTCCAAACAAAGATTACGGAGGTGATCTGTTTATCGATGGAAAGGTCATCCCAAGACCGCAGTATAGGTACAACGATAGGGAACCATCTGGTAGGAACAGGCCTCGTCCACGGTACGATAGACGCCGAGAAACTATGCAAGTTGAACGGAGACAACCGTTTCAGAGACAAAACTGGGGTCGAGACCAGAGAGATCCAATTCAACCACCACCCTCCATGGATGGTCAAAATACAGCTCGAAGTGGTGTTGGAGATTTCTCGACAAATCCAGGCGAGTTTAATCGGAGCAATAACTGA 825 46.3 MASSATRRTLLTVLSRSLSSSSPSSSSFFLSSSISSRLRYAFPLLNRHDQIIPNSFNLPIRFKASGSGYSPLNDPSPNWSNRPPKETILLDGCDYEHWLIVMEFPNDPKLSEEEMVNSYVKTLAAVVGSEEEAKKKIYSVSTTTYTGFGALISEELSYKVKELPGVLWVLPDSYLDVPNKDYGGDLFIDGKVIPRPQYRYNDREPSGRNRPRPRYDRRRETMQVERRQPFQRQNWGRDQRDPIQPPPSMDGQNTARSGVGDFSTNPGEFNRSNN 274
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5429822 5431699 - CcPI632755_06g004940.1 Cco06g0494 181094

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0494 274 MobiDBLite consensus disorder prediction 197 274 - -
Cco06g0494 274 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 91 177 IPR037045 -
Cco06g0494 274 FunFam Multiple organellar RNA editing factor 92 176 - -
Cco06g0494 274 MobiDBLite consensus disorder prediction 197 234 - -
Cco06g0494 274 PANTHER MULTIPLE ORGANELLAR RNA EDITING FACTOR 2, CHLOROPLASTIC-RELATED-RELATED 10 228 IPR039206 GO:0005739(PANTHER)|GO:0016554(InterPro)|GO:0080156(PANTHER)
Cco06g0494 274 MobiDBLite consensus disorder prediction 246 274 - -
Cco06g0494 274 Pfam Multiple organellar RNA editing factor 1, MORF domain 95 186 IPR054059 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0494 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0472 Cco-Chr5:3787184 Cco06g0494 Cco-Chr6:5429822 8.00E-35 dispersed
Cco06g0494 Cco-Chr6:5429822 Cco07g1078 Cco-Chr7:24303955 5.10E-51 dispersed
Cco06g0494 Cco-Chr6:5429822 Cco05g1714 Cco-Chr5:25285222 7.30E-42 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g148 Blo01g00063 Blo12g00141 . . . . . Bma05g01026 . Cmo17g00331 . . . . . . . . . . . . . . Cla06g00461 Cam06g0492 Cec06g0495 Cco06g0494 Clacu06g0478 Cmu06g0479 Cre06g1252 . . Cone7ag0130 Cone4ag0135 . Csa06g01786 Chy11g01532 . . . . . Bpe05g00826 . . . Sed02g1424 . . Cma08g01241 Cma17g00344 . Car17g00313 Cpe12g00292 . Bhi12g02035 Tan06g2704 Cmetu06g1492 . . . Lcy12g0760 . . . . . . . Lsi09g01453 . . Cme11g02035
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0005631 0 1 1 1 1 1 1 1 1 2 1 1 2 2 2 1 1 2 1 1 2 1 1 1 1 2 2 1 4 1 40