Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0497 ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTAAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCAACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGGAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAATATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGCACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGCTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCAATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCAGCTCAAGAAATGACAAGCAACGGTCTTGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACCCTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAGGACGAAATGCCATCATGGGTGAGCGAGGGAAAGAGGCGACTGATGCAGGCAGGTGCGGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCAACCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGACATGGGATTCGAGAACACCGCTGGGGCTGCAAAGCACCAAGCCGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAAAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGGCGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATAATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTATGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA 1713 47.05 MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGNAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRRLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5453474 5455186 + CcPI632755_06g004970.1 Cco06g0497 181097
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0497 570 FunFam Pectinesterase 253 569 - -
Cco06g0497 570 SMART PMEI_2 59 211 IPR006501 GO:0004857(InterPro)
Cco06g0497 570 ProSitePatterns Pectinesterase signature 1. 284 303 IPR018040 -
Cco06g0497 570 MobiDBLite consensus disorder prediction 41 61 - -
Cco06g0497 570 FunFam Pectinesterase 60 216 - -
Cco06g0497 570 Pfam Plant invertase/pectin methylesterase inhibitor 62 211 IPR006501 GO:0004857(InterPro)
Cco06g0497 570 Gene3D - 253 569 IPR012334 -
Cco06g0497 570 MobiDBLite consensus disorder prediction 42 56 - -
Cco06g0497 570 Gene3D Invertase/pectin methylesterase inhibitor family protein 58 216 IPR035513 -
Cco06g0497 570 CDD PMEI-like_3 66 217 - -
Cco06g0497 570 SUPERFAMILY Pectin lyase-like 256 568 IPR011050 -
Cco06g0497 570 ProSitePatterns Pectinesterase signature 2. 403 412 IPR033131 -
Cco06g0497 570 Pfam Pectinesterase 259 555 IPR000070 GO:0030599(InterPro)|GO:0042545(InterPro)
Cco06g0497 570 NCBIfam pectinesterase inhibitor domain 59 215 IPR006501 GO:0004857(InterPro)
Cco06g0497 570 PANTHER PECTINESTERASE 15 560 - GO:0030599(PANTHER)|GO:0046910(PANTHER)
Cco06g0497 570 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 62 216 IPR035513 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0497 Cco-Chr6:5453474 Cco07g1509 Cco-Chr7:29142224 2.60E-113 dispersed
Cco06g0807 Cco-Chr6:9480911 Cco06g0497 Cco-Chr6:5453474 3.10E-37 transposed
Cco11g0021 Cco-Chr11:278329 Cco06g0497 Cco-Chr6:5453474 2.60E-137 transposed
Cco03g1799 Cco-Chr3:32636494 Cco06g0497 Cco-Chr6:5453474 4.70E-195 wgd
Cco05g0741 Cco-Chr5:6085978 Cco06g0497 Cco-Chr6:5453474 1.00E-202 wgd
Cco06g0497 Cco-Chr6:5453474 Cco09g0539 Cco-Chr9:4706801 8.00E-91 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0497 K01051 - csv:101221958 1033.48