Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0497 | ATGTCAAACGGATTTGCCAATGGCGAAGGTGATAAAAAGAAGAAGAAAATCGCCATCGTTAGTGTCTCTTCTTTAATCCTGGTGGCAATGGTTGTCGCCGTCACCGTCGGCGTAAACAGTGCACCTCACGAAGAGCACAGCGACGATCACGGTGGCGAGACTCATGAGATTTCATCAACGACTAAAGCAATCCAAGCCATTTGTCAACCAACGGATTACAAAGAATCCTGCGAGAAGAGTCTAATGGCAGAAGCCGGTAATACAACAGACCCAAAAGAGCTAGTGAAAGTGGGATTCAAAATCGCCACGAGGAATCTAAACGAGGCGATAAGAAATTCCACCACGCTTCAAGAATTAGCCAAAGACCCAAGAACCAACCAAGCCCTTCAAAATTGTCGTGAGCTTTTAGAATATGCGATTGATGATTTGAACGAATCGTTCGAAAGAATCGGCACCTTCCAAATGTCCAAACTGGATGAGTTCGTTGGGGATTTAAAGATTTGGCTGAGTGGGGCCATGACGTACGAACAAACTTGTTTGGATGGATTTGAAAACACGACAGGCAATGCTGGGGAGAGAATGAAAGAGTTTCTGAAGTCAGCTCAAGAAATGACAAGCAACGGTCTTGCAATAGTGAATGAATTGTCTGGCATTTTGGGGACCCTCCAAATCCCTGGAATGAGTGGACGACGACTTTTGGAGGACGAAATGCCATCATGGGTGAGCGAGGGAAAGAGGCGACTGATGCAGGCAGGTGCGGCATCCATGAAGCCCGATTTGGTGGTGGCTCAAGATGGGAGTGGGAAGTACAAGACTATAAATGAAGCTTTGGTTGATGTGCCTTTGAAGAGTAACAAAACGTTTGTGATCTATGTGAAGGCTGGAATCTACAAGGAAATTGTTGTTATTCCAAAGGCTATGACTCATCTGACCATGTACGGTGACGGTCCAACCAAAACGGTGGTTACTGGTAGCTTAAACTTTATTGACGGTATTCAAACATTCAAGACGGCTACCTTCTCTGCAATTGGAGCTAATTTCTACGCTAGAGACATGGGATTCGAGAACACCGCTGGGGCTGCAAAGCACCAAGCCGTAGCCCTACGAGTCCAATCCGATAGATCAATCTTCTACAACTGTCAAATAGATGGCTACCAAGATACCCTCTACGCACACGCTCACCGTCAGTTCTACAGAGACTGCACAATCAGTGGCACCATCGACTTCGTGTTCGGTAACGCCGCCACCATTTTCCAGAACTGCAAGCTGGTGGTCCGAAAGCCAATGGATAACCAACAATGCATCGTCACGGCTCACGGCCGTCTCAACCGCCGTGAACCCACAGCATTGATCTTCCAAAGCTGCCATTTCATGGGTGACCCTGCTTACTTGCCCTTCAAGAACATCAACAAGGCATACTTGGGGCGTCCTTGGAAGGAATATTCACGAACCATTATAATCGGGTCTCAAATAGACGATATAATCCAGCCTGAAGGATGGTTGCCATGGATGGGCGATTTTGGGCTCAAAACCTTGTTCTATGCCGAGGTACAGAACAAAGGGCCAGGGGCTGATGAAAGCAAGAGAGTGAAGTGGCGAGGAATTAAACATATTACGCCACAACACGCCGCGGATTTCACTCCTAGACGATTTATTGATGGCGATGCTTGGATTCCTGCTAAGGGAATTCCCTACTCTTCTGGAATGATGTGA | 1713 | 47.05 | MSNGFANGEGDKKKKKIAIVSVSSLILVAMVVAVTVGVNSAPHEEHSDDHGGETHEISSTTKAIQAICQPTDYKESCEKSLMAEAGNTTDPKELVKVGFKIATRNLNEAIRNSTTLQELAKDPRTNQALQNCRELLEYAIDDLNESFERIGTFQMSKLDEFVGDLKIWLSGAMTYEQTCLDGFENTTGNAGERMKEFLKSAQEMTSNGLAIVNELSGILGTLQIPGMSGRRLLEDEMPSWVSEGKRRLMQAGAASMKPDLVVAQDGSGKYKTINEALVDVPLKSNKTFVIYVKAGIYKEIVVIPKAMTHLTMYGDGPTKTVVTGSLNFIDGIQTFKTATFSAIGANFYARDMGFENTAGAAKHQAVALRVQSDRSIFYNCQIDGYQDTLYAHAHRQFYRDCTISGTIDFVFGNAATIFQNCKLVVRKPMDNQQCIVTAHGRLNRREPTALIFQSCHFMGDPAYLPFKNINKAYLGRPWKEYSRTIIIGSQIDDIIQPEGWLPWMGDFGLKTLFYAEVQNKGPGADESKRVKWRGIKHITPQHAADFTPRRFIDGDAWIPAKGIPYSSGMM | 570 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5453474 | 5455186 | + | CcPI632755_06g004970.1 | Cco06g0497 | 181097 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0497 | 570 | FunFam | Pectinesterase | 253 | 569 | - | - | |
Cco06g0497 | 570 | SMART | PMEI_2 | 59 | 211 | IPR006501 | GO:0004857(InterPro) | |
Cco06g0497 | 570 | ProSitePatterns | Pectinesterase signature 1. | 284 | 303 | IPR018040 | - | |
Cco06g0497 | 570 | MobiDBLite | consensus disorder prediction | 41 | 61 | - | - | |
Cco06g0497 | 570 | FunFam | Pectinesterase | 60 | 216 | - | - | |
Cco06g0497 | 570 | Pfam | Plant invertase/pectin methylesterase inhibitor | 62 | 211 | IPR006501 | GO:0004857(InterPro) | |
Cco06g0497 | 570 | Gene3D | - | 253 | 569 | IPR012334 | - | |
Cco06g0497 | 570 | MobiDBLite | consensus disorder prediction | 42 | 56 | - | - | |
Cco06g0497 | 570 | Gene3D | Invertase/pectin methylesterase inhibitor family protein | 58 | 216 | IPR035513 | - | |
Cco06g0497 | 570 | CDD | PMEI-like_3 | 66 | 217 | - | - | |
Cco06g0497 | 570 | SUPERFAMILY | Pectin lyase-like | 256 | 568 | IPR011050 | - | |
Cco06g0497 | 570 | ProSitePatterns | Pectinesterase signature 2. | 403 | 412 | IPR033131 | - | |
Cco06g0497 | 570 | Pfam | Pectinesterase | 259 | 555 | IPR000070 | GO:0030599(InterPro)|GO:0042545(InterPro) | |
Cco06g0497 | 570 | NCBIfam | pectinesterase inhibitor domain | 59 | 215 | IPR006501 | GO:0004857(InterPro) | |
Cco06g0497 | 570 | PANTHER | PECTINESTERASE | 15 | 560 | - | GO:0030599(PANTHER)|GO:0046910(PANTHER) | |
Cco06g0497 | 570 | SUPERFAMILY | Plant invertase/pectin methylesterase inhibitor | 62 | 216 | IPR035513 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0497 | Cco-Chr6:5453474 | Cco07g1509 | Cco-Chr7:29142224 | 2.60E-113 | dispersed | |
Cco06g0807 | Cco-Chr6:9480911 | Cco06g0497 | Cco-Chr6:5453474 | 3.10E-37 | transposed | |
Cco11g0021 | Cco-Chr11:278329 | Cco06g0497 | Cco-Chr6:5453474 | 2.60E-137 | transposed | |
Cco03g1799 | Cco-Chr3:32636494 | Cco06g0497 | Cco-Chr6:5453474 | 4.70E-195 | wgd | |
Cco05g0741 | Cco-Chr5:6085978 | Cco06g0497 | Cco-Chr6:5453474 | 1.00E-202 | wgd | |
Cco06g0497 | Cco-Chr6:5453474 | Cco09g0539 | Cco-Chr9:4706801 | 8.00E-91 | wgd |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0497 | K01051 | - | csv:101221958 | 1033.48 |