Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0511 ATGAAGAGTGAAAGGAAAGATATGAGGAGAGAAATGAAGAATGAAAAGAGAGAAATGAAGATGGTGGAAATGAGAGAAATGGAGAATGGGAGCTGCCGGTCGGAATTTAAAGAGTGGAACTCGTGGACCCCATCCACGAGTTTGGTCAATGCATGCAGACTGCGGCTGACACGGAAGATGAATTCTGAGCTGCTTCGAAGAAATCAACCGAATCCGACTCCACAAACTCAAAATCCGGTGATTGATTCACCAAGAACTCCGGCTGGTTCTTCCGGAAAATCCAGGAGTCCGATCCATTACATGCTTCGCGAGCAGCGTGTTCTCTTTGTTTTCGTCGGTATCGCCATTGCAACTCTGTTCTTCAATGTCGGTCGTTTCGCTTTTCCGCCGGAGCTGCGTGATGATCACCGTTATCAAGCGGCGATGAATCCGTTCATTCAATTGGATTCGACGATCCCGATGCGGAGAGTTTTGTACGAAACTCGCCGTGAAGGATCGTTAGGACGGGTGAATTTGGCTGGGAAAGTCCCGCCGGGATTGAAGAAGAGGAACCTGAGGATTGTTGTTACTGGTGGCGCCGGATTCGTCGGAAGCCATCTCGTGGACCGTTTGATTGAGAGAGGCGATAGCGTGATCGTCGTTGATAATTTCTTCACTGGACGGAAGGATAATCTGGTTCATCATTTCGGAAACCCGAGATTTGAACTGATTCGACACGACGTCGTTGAGCCGCTTCTATTGGAAGTTGATCAGATCTACCACTTGGCTTGCCCTGCTTCTCCTGTTCATTATAAATTCAATCCTACAAATGTTGTCGGCACACTGAACATGCTAGGGCTTGCGAAGAGAGTCGGCGCTCGCTTTTTGCTCACTAGCACCAGCGAAGTCTACGGTGATCCGCTCCAACACCCGCAGGCTGAAACCTACTGGGGCAACGTCAATCCTATCGGTGTACGGAGCTGCTACGATGAAGGAAAGCGCACGGCGGAGACTTTGACAATGGATTACCACAGAGGCCTTGGCATTGAGGTGCGGATTGCTCGGATCTTCAATACTTATGGACCACGGATGTGCATCGATGACGGTCGGGTTGTGAGCAATTTTGTAGCACAGGCATTGAGAAAGGAGCCGTTGACAGTATATGGGGACGGCAAGCAAACCCGGAGTTTTCAATATGTTTCTGATCTGGTGGAGGGGTTAATGAAACTTATGGAAGGTGAGCACGTGGGCCCTTTTAATCTCGGCAACCCCGGCGAATTCACCATGCTCGAACTTGCCCAGGTAGTACAAGAGACAATAGATCCAAATGCAAGGATAGAGTTCAGGCCAAACACAGAAGACGACCCACACAAAAGAAAGCCCGATATTTCCAAAGCTAAGGACCTTCTTGGTTGGGAGCCCACCGTGTCCCTTCGGAAGGGCCTTCCCCTTATGGTTTCCGACTTCCGCCAACGCATCTTCGGCGATTCCAAAGACGACAGCTCCTCCGCCGCCGTCGCCGCCCTTCTCTCCACCACCACCTCCTCGGTCTAG 1533 50.55 MKSERKDMRREMKNEKREMKMVEMREMENGSCRSEFKEWNSWTPSTSLVNACRLRLTRKMNSELLRRNQPNPTPQTQNPVIDSPRTPAGSSGKSRSPIHYMLREQRVLFVFVGIAIATLFFNVGRFAFPPELRDDHRYQAAMNPFIQLDSTIPMRRVLYETRREGSLGRVNLAGKVPPGLKKRNLRIVVTGGAGFVGSHLVDRLIERGDSVIVVDNFFTGRKDNLVHHFGNPRFELIRHDVVEPLLLEVDQIYHLACPASPVHYKFNPTNVVGTLNMLGLAKRVGARFLLTSTSEVYGDPLQHPQAETYWGNVNPIGVRSCYDEGKRTAETLTMDYHRGLGIEVRIARIFNTYGPRMCIDDGRVVSNFVAQALRKEPLTVYGDGKQTRSFQYVSDLVEGLMKLMEGEHVGPFNLGNPGEFTMLELAQVVQETIDPNARIEFRPNTEDDPHKRKPDISKAKDLLGWEPTVSLRKGLPLMVSDFRQRIFGDSKDDSSSAAVAALLSTTTSSV 510
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5584856 5592405 + CcPI632755_06g005110.1 Cco06g0511 181111

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0511 510 MobiDBLite consensus disorder prediction 64 93 - -
Cco06g0511 510 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 177 486 IPR044516 GO:0005737(PANTHER)|GO:0042732(PANTHER)|GO:0042732(InterPro)|GO:0048040(InterPro)|GO:0048040(PANTHER)|GO:0070403(PANTHER)|GO:0070403(InterPro)
Cco06g0511 510 MobiDBLite consensus disorder prediction 1 20 - -
Cco06g0511 510 FunFam UDP-glucuronic acid decarboxylase 2 181 301 - -
Cco06g0511 510 Pfam GDP-mannose 4,6 dehydratase 189 476 IPR016040 -
Cco06g0511 510 MobiDBLite consensus disorder prediction 64 96 - -
Cco06g0511 510 FunFam UDP-glucuronic acid decarboxylase 1 302 487 - -
Cco06g0511 510 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 183 487 IPR036291 -
Cco06g0511 510 Coils Coil 5 25 - -
Cco06g0511 510 CDD UGD_SDR_e 186 483 - -
Cco06g0511 510 Gene3D - 303 487 - -
Cco06g0511 510 Gene3D - 181 302 - -
Cco06g0511 510 MobiDBLite consensus disorder prediction 440 459 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0511 K08678 - - csv:101222435 794.267
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0511 Cco-Chr6:5584856 Cco10g2072 Cco-Chr10:34103237 4.50E-170 dispersed
Cco07g0329 Cco-Chr7:3404806 Cco06g0511 Cco-Chr6:5584856 1.20E-133 transposed
Cco08g1417 Cco-Chr8:26087376 Cco06g0511 Cco-Chr6:5584856 2.10E-21 transposed
Cco09g2198 Cco-Chr9:36312022 Cco06g0511 Cco-Chr6:5584856 5.10E-133 transposed
Cco10g1071 Cco-Chr10:22888736 Cco06g0511 Cco-Chr6:5584856 1.80E-188 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g183 . . . . . . . . . Cmo17g00321 . . . . . . . . . . . . . . Cla06g00473 Cam06g0508 Cec06g0509 Cco06g0511 Clacu06g0492 Cmu06g0493 Cre06g1265 . . . . . Csa06g01816 Chy11g01517 . . . . . . . . . . . . . Cma17g00331 . . Cpe12g00281 . . . . . . . . . . . . . . . Lsi09g01438 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000444 4 3 3 5 4 3 5 3 3 4 3 3 5 3 3 5 3 9 5 3 5 4 4 3 3 4 2 8 4 4 120