Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0513 ATGGAGGAAGCCATTTCTCGAATCCTCACGGAGCTCGAAGAAGTTCGCCACTTCGACGACTCTACAACTCTCCATTCCCAACCTCCGCCGCCGCTCTCCGATTCCTCTCTCTTCGACCTTCAAAGCTTATTAGACAACTCAATCGGTACCGATGAACAACCACCACTCGATCGCCTCTACGACTACCTCTCGGCCAAATCCCTCTCTCCGTCTTCTCTTACCCGAGCCATCGCCTCCGCCATGGACGAATCTTCCACTCGCGTTTCGATTTTAGCTTCTAGAGTCTATCTCTCCCTTCTTCTGGCCCCAAATGCACCGGTGTTCACGCTGTTCAATCCGATGGGTTTTCTTTCGTTTCTCAGGTCGATGAGGCGATTATTGAAGCAGCGACCGCGGGCTCAACCGGACCAGGATGATTCTAATAAGGACTCTAATGCTCCCAAACGGAAGAGGAAAGCCGGTGTTAAGGGTAAGGGTTTGGGGAATTGTGCGCTGAGGCAGAGTTTTAGTGGCAGGTATGATGATGGTGAATTCGATGCAAGAGTCTTGTATCCTGTACTTGAGAGGTTAGAGAATTTAATGAGTTTGATTCATTTGGATCGATTTCCGGATAGTTTGAAATCTTTGATTGAAACTGTAATTGATATTCCAGTTTTGGCACTTGAAGTATGCACTAATTTGAGTATCTATAGTAAGTTCACTAATTTATGTTCACGGATTTTGAGTGCTACATTGCGTCCTGAGCATGGGGATCTATCGAGTACTGCCGTTGAGGTGATTAAGTCTCTGTCACCATTGATTCTTAATCATAAAGATCAGGCGCGAGCGTTTGCGCTAGGGTTTGTGACTATTCAAATAGCAAATGTAGCAAAGGAATCAGATGGTGTTAAGAGTGTTCTGGTGAATCTTCCAAGGTATTTGGTTCAGAAGGCTCCTGAGAAATCTGAGCCTCGTAGTTTAGCAGTTGATTCAATAATGGAGGTTGTTAAAGTGATTGAATTCCCCGATCAAATTGGGTTTGTGGATTATGTAGTGAAGATGACCAGAGGAAAGTCTAATCTTAGGCTGTTAGCGGTTGATCTCATCTCAATGCTGATAACGTCCTTGAGTGATCCAATGGCCATTGATTCCGAAAGCGAACTAAAGGATTCGTGGGGATTTGGGTGCTTGGTGGCATTGGTTCAACGTTGTTCAGATGCCAGTGCTCCAATTCGTGCTCGAGCACTTACCAACTTAGCTCACCTTGTGGTGTTCTTGTCTGAGAATGACAAGAATAAGGCCTTACTGGAGGAAGTGTTGGGGTCTGGTGACAGACATTGCAAAAAAAGTGGAGGTGAAATTCATGCTCTTTTGCGAAAAAGGTGTATGGATGAGAAGGCGGCAGTTAGGAAGGCTGCATTATTTCTGGTTACCAAGTGCACAACCCTCCTTGGTGGAGCAATAGATGGAGATATGCTGAAAACGGTGGGCATTGCTTGTTCTGATCCACTTGTTAGCATACGGAAAGCTGCAATGTCGGCTCTCTCAGAGGCCTTTCGAAGATTCCCAGATGAAAGTGTCATGGTCGAGTGGCTACACTCTATTCCACGTTTAATTGCTGACAGTGAATCTAGCATTCAAGAAGAGTGTGAACACTTGTTTCAAGAACTAGTACTAGACCGGTTGTCTAGAGTTGGATCTTCAAGTTTACCTAAAGGAGCATTAAATCTTCTTAAAGAGATGAGTCATGCAGAGGTAATTCCTTGGGTGAGGAAAGTTTGTGCTAATTTGGGAAAAAAGAAAAAATTAAAACGCACAATTGCGGATTCACTTCAGATAATTATAAAGACATCTGAATCCTTTTGGCTAAGCCAATCTTTGCCTCCAGAGAGGTGGACAGCTCCCCCAGGTGCCTGGTTCCTGCTGGCAGAAGTATCGACTTATCTTGGGAAAGCCGTTGATTGGGAGTTTCTTCATCATCACTGGAAACTCCTTGATGATCATGGTAGGACTGAGTTTCAGAGTCCAGTGGCTCAAGTAGGTTTATTTGGAGAGGAAAACAACTCAGAGTCAAATTCCGTGACTTGGGCTCAAGATCGAGTTTTTCTCTTACAAACCATTTGTAATGTTTCTGTTGAGCTGCCTCCAGAACCTGCAGCAGAATTAGCTCATGAATTGCTTAAAAGGGTTGAAGAATTTAACATGCATTCAACGGAGGTGAATGCACATGTAAAAACACTTAAAACATTGTGTAAGCGGAAGGCTTTGCTATCTACTGAAGCCGATGCCCTTATCCTAAAATGGGTAAACCAGCTGCTTTCCAAAGCCTCTCACATATTGGAGAAGTACATATCCAAGCATGCAGAAGCAAACAAAGATGTGAACTTCGTAACTCCACCTCCTAAAAGTGGTAGTCGAATTGGGAAGAAAGCAACTGCCAGGAGCAAGTCCTTGTCCCGAGCAATCACTGCAGCTTACACCATTGGCTCTTTGATTCTCATTTGTCCATCGGCTGACATGACTACCATCATACCACTTCTCCACACCATTATCACTTCTGGAAACCGTGATCCCAAATCTAATAAACTACCAATTCAAACTGCATCTCTAAAGGAAACTGCCCCTTCTTTATACGTTCAAGCATGGTTGACAATGGGGAAGATTTGCCTTGCTGACGAGAAGTGTGCAAAGAGTTACATTCCTCTATTTGTACAGGAGCTTGGAAACAGTGATTGTGCAGCTCTTCGCAACAACCTTATTATCACAATGGCAGATTTTTGTGTACGCTATACTGCTCTAGTTGACTGCTACCTTACGAAAATCACAAAGTGCCTTCGGGACCCTTGTGAACTTGTCAGAAGACATACATTCATACTTCTATCGAGATTACTACAGAGGGACTATGTGAAATGGAGAGGGGTTTTGTTTCTTCGGTTTCTCTTGTCACTTGTTGATGAATCAGAGAAGATTCGTCAACTAGCAGATTTCCTTTTTGGGAACATTTTAAAAGTGAAGGCACCACTTTTGGCTTACAACAGTTTTGTAGAAGCAATTTATGTTTTGAATGACTGTCGTGCTCATTCTGGACATAGCGATTCAAATGCTTCACGAGCTGAAAGTCGACTATTCTCCATCCGAGGCAATGATGAAAGGTCGAGGTTCAAGAGAATGCACATTTATGTTTCTCTGTTGAAACAAATGGCTCCTGAGCATCTTTTGGCAACCTTTGCAAAGTTATGCGCAGAGATTCTTGTTGCAGCATCAGATGGTATGCTCAATATAGATGATACCACTGCACGGTCTGTTTTACAGGATACCTTTGATATTCTTGCTTGTAAAGAGATCCGACTATCGGTAAATCGAGTATCATCATCAGAATCTGGTGATGTAGATGAGGAAGGAGGCGAGAGCGGAGGAGCATCTGCTGCTAGAGGAAAGGTCATCACTCATGCAGTGAGAAAGAGTCTCATTCAAAGCACCATACCCATCTTCATTGAGTTAAAAAGGCTAATGGAAAGCAAGAATAGCCCCCTTATAGGTTCCCTCATGGAATGTCTTCGAGTTCTTCTCAAAGACTACAAGAACGAAATCGATGACTTATTGGTAGCCGATAAGCAACTTCAGAAAGAGCTCCTCTATGACATTCAAAAGTATGAATCTACCAAAGCCAAGTCAGCTGCTGCCGAGGCGGTCAACGAGATGCATAAGTCAACTAACTATCTTTCACCTGAGGCTCCTCCTCAAGCTAGAAGTGCCATTAACAAGCTAACCTCAAAGATTCAAAATGACTCGAAAGTTGCTTCAGCCATTGCTGATGCAGCTGCTGCAGCCACAGCAAAATCTGTGCTTAGGAAAGTGAATAGAGGGGCTTCGACACCGCCTCTTGGTTCTCTAAGTTTGCCTAAACTCAAGTCTCGTACTGGTGGAAACAATGACACAAATACCTCACATTTTAATGTGATTGAATCTTTAAGAAAACGTCAGTCTTTTGAAAACAACGGCGGCCCTACGGGCAGAAGTTCAACTATTGTTTCTGCATCTGGTTCATCTGAAAGGATGTCAACATCTGCAATTATGGAAAGAATTCCAAGCAAGTGGCAATGTCCGGTTTGGCAAGCTCCATGGAGAAATTATAGGGTCTTGCTGTCAGCAACAGGCATACCTACATGTTTTCAGCTGGTGATGACAAACAAGTTAAATGCTGGGACATGGAACAGAATAAGTTTTCAGCAGCAGACTATAATCAATGCAATAACTGTCAATGAGGAGGGTGTTGTGGTGACTGGAGCTGCTGCAGCCACGGCGAAGTTTGTGCTTAGGAAAGTGAACAGAGGGGCTACGACACCGCCTCTCAATTCTCTAAGTTTGCCAAAACTCAAGTCTCATACTGGTGGAAACAATGGCACAACAGCCCGACTCCCAGCTCGGTGTTCATCGGTAAGAAATTTTTCGTACGAATTCGATCTTCAGAATGAATCAAGATCCTCATTTTTCTTCATGTTTCAAGCCATCAATCTCTTTATATCAGGTATTCTCTATCTCGAGTTTGTGATCAGTCTAGTTGCAATTGAATTGTATCTCAAATTGGACTGA 4572 43.53 MEEAISRILTELEEVRHFDDSTTLHSQPPPPLSDSSLFDLQSLLDNSIGTDEQPPLDRLYDYLSAKSLSPSSLTRAIASAMDESSTRVSILASRVYLSLLLAPNAPVFTLFNPMGFLSFLRSMRRLLKQRPRAQPDQDDSNKDSNAPKRKRKAGVKGKGLGNCALRQSFSGRYDDGEFDARVLYPVLERLENLMSLIHLDRFPDSLKSLIETVIDIPVLALEVCTNLSIYSKFTNLCSRILSATLRPEHGDLSSTAVEVIKSLSPLILNHKDQARAFALGFVTIQIANVAKESDGVKSVLVNLPRYLVQKAPEKSEPRSLAVDSIMEVVKVIEFPDQIGFVDYVVKMTRGKSNLRLLAVDLISMLITSLSDPMAIDSESELKDSWGFGCLVALVQRCSDASAPIRARALTNLAHLVVFLSENDKNKALLEEVLGSGDRHCKKSGGEIHALLRKRCMDEKAAVRKAALFLVTKCTTLLGGAIDGDMLKTVGIACSDPLVSIRKAAMSALSEAFRRFPDESVMVEWLHSIPRLIADSESSIQEECEHLFQELVLDRLSRVGSSSLPKGALNLLKEMSHAEVIPWVRKVCANLGKKKKLKRTIADSLQIIIKTSESFWLSQSLPPERWTAPPGAWFLLAEVSTYLGKAVDWEFLHHHWKLLDDHGRTEFQSPVAQVGLFGEENNSESNSVTWAQDRVFLLQTICNVSVELPPEPAAELAHELLKRVEEFNMHSTEVNAHVKTLKTLCKRKALLSTEADALILKWVNQLLSKASHILEKYISKHAEANKDVNFVTPPPKSGSRIGKKATARSKSLSRAITAAYTIGSLILICPSADMTTIIPLLHTIITSGNRDPKSNKLPIQTASLKETAPSLYVQAWLTMGKICLADEKCAKSYIPLFVQELGNSDCAALRNNLIITMADFCVRYTALVDCYLTKITKCLRDPCELVRRHTFILLSRLLQRDYVKWRGVLFLRFLLSLVDESEKIRQLADFLFGNILKVKAPLLAYNSFVEAIYVLNDCRAHSGHSDSNASRAESRLFSIRGNDERSRFKRMHIYVSLLKQMAPEHLLATFAKLCAEILVAASDGMLNIDDTTARSVLQDTFDILACKEIRLSVNRVSSSESGDVDEEGGESGGASAARGKVITHAVRKSLIQSTIPIFIELKRLMESKNSPLIGSLMECLRVLLKDYKNEIDDLLVADKQLQKELLYDIQKYESTKAKSAAAEAVNEMHKSTNYLSPEAPPQARSAINKLTSKIQNDSKVASAIADAAAAATAKSVLRKVNRGASTPPLGSLSLPKLKSRTGGNNDTNTSHFNVIESLRKRQSFENNGGPTGRSSTIVSASGSSERMSTSAIMERIPSKWQCPVWQAPWRNYRVLLSATGIPTCFQLVMTNKLNAGTWNRISFQQQTIINAITVNEEGVVVTGAAAATAKFVLRKVNRGATTPPLNSLSLPKLKSHTGGNNGTTARLPARCSSVRNFSYEFDLQNESRSSFFFMFQAINLFISGILYLEFVISLVAIELYLKLD 1523
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5598777 5612869 + CcPI632755_06g005130.1 Cco06g0513 181113

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0513 1523 MobiDBLite consensus disorder prediction 1281 1309 - -
Cco06g0513 1523 SUPERFAMILY ARM repeat 340 1230 IPR016024 -
Cco06g0513 1523 Gene3D - 389 556 IPR011989 -
Cco06g0513 1523 Pfam non-SMC mitotic condensation complex subunit 1 908 1076 IPR032682 -
Cco06g0513 1523 MobiDBLite consensus disorder prediction 128 159 - -
Cco06g0513 1523 PANTHER CONDENSIN 13 1324 IPR026971 GO:0000779(PANTHER)|GO:0000799(PANTHER)|GO:0007076(PANTHER)|GO:0007076(InterPro)|GO:0010032(PANTHER)|GO:0042393(PANTHER)
Cco06g0513 1523 Coils Coil 1176 1203 - -
Cco06g0513 1523 MobiDBLite consensus disorder prediction 1321 1340 - -
Cco06g0513 1523 MobiDBLite consensus disorder prediction 129 150 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0513 K11491 - - csv:116405799 1985.69
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0510 Cco-Chr6:5568205 Cco06g0513 Cco-Chr6:5598777 2.90E-17 proximal
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g291 . Blo12g00017 . . Bpe04g01135 . . . . Cmo17g00320 . . . . . . . . . . . . . . Cla06g00475 . . Cco06g0513 . Cmu06g0495 . . . Cone7ag0144 . . . Chy11g01515 . . . . . . . . . Sed12g1134 . . . Cma17g00330 . Car17g00304 . . Bhi12g02048 Tan06g2683 Cmetu04g0061 Lac11g0844 Hepe03g0098 . Lcy12g0737 . . . . . . . Lsi09g01434 . . Cme11g02016
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0010431 2 2 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0 1 0 1 1 1 1 2 1 2 1 1 31