Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0516 ATGGGCGGCCAGATGCAGCAAAGCAATGCTGCGGCGGCGACTGCCTTTTACGACCACGCCGGCGGTGGGACCCTGCATAATGCAGGCCCCACTAACGACGCCGGTGATGCGGTCATGGCTCGGTGGCTCCAGTCCGCTGGCTTGCAGCATCTGGCCTCTCCCTTGGCTGATCAGCGCTCCCTCCTCATGCAGAGTTATGGAGCACAATCTGCCGAAGAGAAACAAAGGCTTTTAAAACTGATGAGAAACCTGAATTTTGGTGGGGAGTCTGGATCTGAACCACATACACCTACTGCCCAAGCTTCTGGAGTACTGGGTGCAATGGAGGGCTATTATTCTCCAGAGTTTAGGGGAGATTTTGGTGCTGGACTTTTGGATCTCCATGCTATGGATGATACCGAGCTTTTGTCTGAGCACGTTATCTCAGAACCATTCGAGCCGTCACCATTCATTCCTAGTGGTACTAGACCATTTGAGGATGAATTTAATATAGCCAGCAGCAGGCAGCAAAGAAGCCAAGCTGATGAAGATGCCGTGGCTATGTTACCGGTGACTGAGAAAGAGAATGTTGCCAGAGAAAATAACGTGGCTAAAATCAAAGTTGTGGTGCGAAAGAGACCATTAAACAAGAAGGAACTTGCTCGTAAGGAGGATGATATTGTATCAGTATGCGACAATGCCTCTTTGACTGTTCATGAACCAAAACTAAAGGTGGACTTAACTGCATATGTGGAGAAGCATGAATTCTGCTTTGATGCAGTTCTTGATGAGTATGTTACCAATGATGAGGTTTATAGGGTTACCGTGCAACCAATTATCCCCATCATCTTTGAACGAACAAAGGCTACATGTTTTGCTTATGGTCAAACAGGCAGTGGCAAGACATTTACAATGCAGCCATTACCTCTTAGAGCTGCCGAAGACCTTGTTCGTTTGTTACATCAGCCGGTATATCGCAATCAGAGATTCAAGTTGTGGCTTAGCTTTTTCGAGATATATGGTGGAAAATTGTTTGATCTACTCAGTGACAGGAAGAAGCTTTGCATGAGAGAAGATGGGCGGCAGCAGGTTTGTATTGTTGGACTTCAAGAATTTGAAGTGTCTGATGTACAAATTGTCAAAGAATATATCGAGAAGGGAAATGCAGCTAGGAGTACAGGGTCCACTGGTGCCAATGAGGAGTCTTCAAGGTCACATGCTATATTGCAACTTGCTGTTAAGAAACATCCTGAAGTAAAGGAATCCAGAAGGAACAATGACGGAAATGAGTTGAAAAGTGGGAAGCTTGTTGGGAAAATCTCTTTTATTGATTTGGCTGGCAGCGAAAGAGGTGCTGATACGACTGATAATGACCGTCAGACAAGGATTGAGGGAGCGGAAATCAACAAAAGTCTTTTGGCTTTGAAGGAATGCATCCGTGCCTTGGACAATGATCAGATTCATATACCCTTCCGTGGAAGCAAACTCACAGAAGTGCTCCGTGATTCCTTTGTTGGCAACTCAAGAACTGTTATGATATCATGCATTTCCCCGAATGCTGGTTCATGCGAACATACTCTCAATACTTTGAGATATGCTGACCGGGTCAAAAGTTTGTCCAAAAGTGGAAATGCAAAAAAGGATCCGGCTGTTAGTTCCAGTGTACCAATAGCTAGAGATGTTTCTTCAGCCCCGTCTATTCCAATTCCAACTGAAGCAGAAGATATGAACATGCTGCGCCAAGAGGTGAAATTAGGGGAATTGGGCAGAAGGGTTGCAGAGAAAGAGAGTCTCTCCTCTTCCAACTTTGACATCCCAGCTACTGCTTTGCCATCAAGCAATAGCCTTCATGCACGAGAAGAGAAAAGTACAGGCATAAGTGGAACTTCTGCATCATTCGACAAGGAGCCACCTGAAATGAGGAACGCTCATAGTGATCCAACGGGTCGCAAGATTCCCATGTATTCCCACAACTTAAATGATACAGAGGAGAAGGTGCAAAAGGTATCACCACCCCGAAGAAAATCAAACCGAGATGAAAAATCAGAAAAATTGGGGAGCTGGCAGAAGAAAGATAACGCTGTGCCTGATGTCACAACTGCAAGCTCCAAGCAGTATGGTCCTGGAATTTCTAATGCAAATGATGCTGGATCCAGAAAGGCTGAACCTGAGCCAACTCCTGATGGGAACATTAATGCAATACTGGAGGAAGAAGAGGCGTTAATTGCTGCTCATCGAAAAGAAATTGAGGACACCATGGAGATAGTGCGTGAAGAAATGAAATTGTTGGCAGAAGTGGATCAACCTGGAAGCCACATTGAAAACTACGTGACTCAGTTGAGTTTTGTGCTGTCCCGAAAGGCCGCGGGTTTGGTTAGTCTTCAAGCACGCCTTGCAAGGTTCCAGCATAGACTTAAAGAACAAGAAATACTGAGCCGAAAAAGAGTACCGCGTTAA 2436 45.44 MGGQMQQSNAAAATAFYDHAGGGTLHNAGPTNDAGDAVMARWLQSAGLQHLASPLADQRSLLMQSYGAQSAEEKQRLLKLMRNLNFGGESGSEPHTPTAQASGVLGAMEGYYSPEFRGDFGAGLLDLHAMDDTELLSEHVISEPFEPSPFIPSGTRPFEDEFNIASSRQQRSQADEDAVAMLPVTEKENVARENNVAKIKVVVRKRPLNKKELARKEDDIVSVCDNASLTVHEPKLKVDLTAYVEKHEFCFDAVLDEYVTNDEVYRVTVQPIIPIIFERTKATCFAYGQTGSGKTFTMQPLPLRAAEDLVRLLHQPVYRNQRFKLWLSFFEIYGGKLFDLLSDRKKLCMREDGRQQVCIVGLQEFEVSDVQIVKEYIEKGNAARSTGSTGANEESSRSHAILQLAVKKHPEVKESRRNNDGNELKSGKLVGKISFIDLAGSERGADTTDNDRQTRIEGAEINKSLLALKECIRALDNDQIHIPFRGSKLTEVLRDSFVGNSRTVMISCISPNAGSCEHTLNTLRYADRVKSLSKSGNAKKDPAVSSSVPIARDVSSAPSIPIPTEAEDMNMLRQEVKLGELGRRVAEKESLSSSNFDIPATALPSSNSLHAREEKSTGISGTSASFDKEPPEMRNAHSDPTGRKIPMYSHNLNDTEEKVQKVSPPRRKSNRDEKSEKLGSWQKKDNAVPDVTTASSKQYGPGISNANDAGSRKAEPEPTPDGNINAILEEEEALIAAHRKEIEDTMEIVREEMKLLAEVDQPGSHIENYVTQLSFVLSRKAAGLVSLQARLARFQHRLKEQEILSRKRVPR 811
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5633128 5639277 + CcPI632755_06g005160.1 Cco06g0516 181116

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0516 811 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 193 532 IPR027417 -
Cco06g0516 811 MobiDBLite consensus disorder prediction 589 723 - -
Cco06g0516 811 Coils Coil 728 759 - -
Cco06g0516 811 PANTHER KINESIN-RELATED PROTEIN 6 8 805 IPR027640 GO:0003777(PANTHER)|GO:0003777(InterPro)|GO:0005874(PANTHER)|GO:0007018(InterPro)|GO:0007019(PANTHER)
Cco06g0516 811 Pfam Kinesin motor domain 204 531 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 PRINTS Kinesin heavy chain signature 279 300 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 PRINTS Kinesin heavy chain signature 432 450 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 PRINTS Kinesin heavy chain signature 482 503 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 PRINTS Kinesin heavy chain signature 389 406 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 MobiDBLite consensus disorder prediction 686 705 - -
Cco06g0516 811 SMART kinesin_4 196 538 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 MobiDBLite consensus disorder prediction 650 683 - -
Cco06g0516 811 MobiDBLite consensus disorder prediction 589 624 - -
Cco06g0516 811 Coils Coil 784 804 - -
Cco06g0516 811 FunFam Kinesin-like protein 177 535 - -
Cco06g0516 811 CDD KISc_KIF2_like 198 530 - -
Cco06g0516 811 ProSiteProfiles Kinesin motor domain profile. 198 532 IPR001752 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)|GO:0008017(InterPro)
Cco06g0516 811 ProSitePatterns Kinesin motor domain signature. 431 442 IPR019821 GO:0003777(InterPro)|GO:0005524(InterPro)|GO:0007018(InterPro)
Cco06g0516 811 Gene3D Kinesin motor domain 176 535 IPR036961 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0516 K10393 - - csv:101210544 1505.35
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0516 Cco-Chr6:5633128 Cco09g0204 Cco-Chr9:1825987 3.30E-167 dispersed
Cco06g0516 Cco-Chr6:5633128 Cco06g0946 Cco-Chr6:12548318 1.50E-170 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g296 . . . Bda08g00291 . . . . Cmo08g01203 Cmo17g00316 . . . . . . . . . . . . . . Cla06g00478 Cam06g0512 Cec06g0513 Cco06g0516 Clacu06g0496 Cmu06g0498 Cre06g1269 Cone14ag0761 Cone15ag0770 . . . . Chy11g01510 . . . . . Bpe05g00836 . . . Sed02g1073 . . Cma08g01228 Cma17g00327 Car08g01104 Car17g00301 Cpe12g00278 Cpe17g00027 Bhi12g02054 Tan06g2680 Cmetu07g0697 . . . . . . . . . . . Lsi09g01431 . . Cme11g02012
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0007921 1 2 1 0 1 1 2 1 1 1 1 1 2 1 1 2 1 2 1 1 1 1 1 1 1 1 1 2 2 1 36