Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0540 ATGGCGAAACCCTCGAAACGACAGGCGTCTTCCGATGAAGCCATGTCCAATGGCTCGAGCTCATCGGAGGAAGAGGAGCAAACTAACGAGCAGATCAATGAGGAAGAAGACGAGGAGGAGCTCGAAGCGGTCGCTCGCTCGGCAGGCTCTGACGAGGATGAAGCTGCCGACGATTCTGATAACGATGCATCACCTGTCGAAAATGGCGAGGAAGAGGATGGAAGTAACGACGGCCAAGATGATAGAACCGATATTAGCCGGCGTGAAAAGGCCAGACTAAGAGAAATGCAACAAATGAAGAAGCAGAAGATTCAGGATATGTTAGATGCACAAAATGCTGCTATTGATGCTGATATGAATAACAAGGGGAAGGGACGCTTGAAGTATCTTCTGCAGCAAACTGAGATATTTGCTCATTTTGCTAAAGGCGATCATTCTTCTTCCCAGAAGAAGACGAAGGGAAGGGGTCGCCATGCATCAAAACTAACTGAAGAAGAAGAAGATGAAGAATACCTTAAAGAGGAAGAAGATGGTCTATCTGGGACTGGGAACACTCGTTTAGTTTCACAACCATCTTGTATCCAAGGGAAAATGAGGGATTATCAACTAGCTGGATTAAATTGGCTCATTCGATTATATGAGAATGGCATAAATGGAATCCTTGCTGATGAGATGGGGCTTGGCAAGACATTACAAACCATCTCCTTGTTGGGCTATCTCCATGAGTACAGAGGCATAACAGGCCCTCATATGGTAGTTGCACCAAAATCTACCCTGGGAAACTGGATGAATGAAATTCGGCGATTTTGCCCTGTCTTGCGTGCTGTAAAGTTTCTTGGAAATCCTGATGAAAGGAGGGATATACGGGAAAATTTACTGGTTGCTGGGAAATTTGATGTCTGTGTTACCAGTTTCGAAATGGCCATTAAGGAGAAGACTTGCTTGCGTCGTTTCAGTTGGCGCTACATTATTATTGATGAAGCTCATCGGATTAAGAATGAGAATTCCCTCCTTTCAAAGACAATGAGGCTTTATAACACCAACTACCGTCTTCTAATCACTGGCACCCCGCTTCAGAACAATCTACATGAACTATGGTCTCTCCTCAATTTCCTTTTGCCTGAAATATTTAGTTCAGCTGAGACTTTTGATGAATGGTTTCAAATTTCTGGGGAAAATGATCAGCAGGAGGTGGTTCAGCAACTTCACAAGGTCCTTCGGCCATTTCTTCTTCGGAGGTTGAAATCGGATGTAGAGAAAGGTTTACCGCCAAAAAAGGAAACAATACTCAAAGTAGGCATGTCACAGATGCAAAAACAATACTATCGTGCTTTGCTGCAGAAGGATCTTGAAGTTGTTAACGCTGGTGGTGAGCGTAAACGGCTACTTAATATAGCAATGCAGCTCCGGAAATGCTGTAATCACCCATATTTGTTTCAAGGTGCTGAACCTGGGCCTCCTTACACCACAGGGGACCATCTTATTACTAGTGCTGGTAAAATGGTTCTTTTGGACAAGTTGCTTCCAAAACTGAAAGAGCGTGATTCTAGAGTCCTAATATTTTCGCAGATGACAAGGCTGTTGGACATTCTTGAAGATTATTTAATGTTTCGTGGATACTATTACTGTCGAATTGATGGTAACACTGGTGGTGAAGATCGTGATGCATCCATTGATGCCTTCAACAGGCCAGGAAGTGAAAAATTTGTTTTCTTACTATCAACCAGAGCTGGAGGTCTTGGTATTAATCTTGCTACTGCAGATGTAGTTATTCTTTATGACAGTGACTGGAACCCTCAAGTTGATCTACAAGCACAAGATCGTGCTCACAGGATTGGTCAGAAGAAGGAAGTTCAAGTGTTCCGATTTTGCACTGAGTATACCATTGAGGAAAAAGTGATAGAAAGGGCTTACAAGAAACTTGCCCTTGATGCTTTGGTGATTCAACAAGGACGTTTAGCAGAGCAGAAAACTGTCAACAAGGATGAGCTACTTCAAATGGTGAGATTTGGTGCTGAGATGGTTTTCAGTTCCAAAGATAGCACCATCACAGATGAGGACATTGACAGAATCATTGCAAAGGGAGAAGCAGCAACAGCAGAGCTTGATGCAAAGATGAAGAAATTTACAGAAGATGCCATTAAATTTAAAATGGATGAAACTGCTGAATTGTATGATTTTGATGATGAAAAGGACGAGAATAAATTTGACTTCAAGAAAATTGTTAGTGAAAATTGGATTGAACCACCTAAAAGGGAGCGGAAGCGCAATTACTCAGAATCAGAATACTTTAAGCAAACAATGCGGCAGGGTGGTCCAACAAAACCAAAGGAGCCCAGAATACCTCGCATGCCTCAGTTGCATGATTTCCAGTTTTTTAACACACAAAGGTTGAGTGAACTCTATGAAAAAGAAGTGCGGTATCTCATGCAAACACATCAAAAGAATCAGTTGAAAGACACAATAGATGTTGAGGAGCCTGAAGAGGTGGGTGATCCTTTGACTGCTGAGGAGCTGGAAGAGAAGGAGCGACTCTTAGAGGAAGGATTTTCTTCATGGAGTCGCAGAGATTTCAATACATTTATTAGGGCTTGTGAGAAATATGGGCGAAATGATATAAAAAGTATTGCTTCAGAGATGGAAGGAAAAACAGAAGAAGAAGTTGAGAGATATGCGAAGGTCTTTAAGGAGAGATACAAAGAGTTAAATGATTATGATAGAATCATCAAGAACATAGAAAGAGGGGAAGCAAGGATTTCCCGTAAAGACGAAATAATGAAAGCCATTGGCAAGAAACTGGACCGCTACAAAAATCCATGGCTGGAGCTCAAGATCCAGTATGGCCAGAATAAAGGGAAGTTGTATAACGAAGAATGTGATCGGTTCATGATATGCATGGTTCACAAACTTGGTTATGGAAACTGGGACGAACTGAAGGCAGCATTTCGCACATCACCCTTGTTTCGCTTTGATTGGTTTATCAAGTCGCGAACGACGCAAGAACTTGCGAGGAGGTGTGATACCTTAATCCGATTAGTGGAGAAAGAAAACCAGGAACATGACGAAAGGGAGAGACAGGCCCGTAAAGAAAAGAAGCTTGCAAAGAGTATGACGCCGTCAAAACGTTCCTTGGCAAGGCAGACTGAGAGCCCAACTAACCTAAAGAAGCGGAAACAATTATCAATGGACGATTATGTAAACTCCATGATGCGATTGCGTCAAAACATTGAAAATTTTGCATCATCAGCCACGGGACAGTCATATGAAGAACAAGCTGTTGACAAACTGACGACCGTCTCAGAGACTCGTCTGGTTGCTCTTGAATTGAATCTTCAGCCGAATGCTCGCACTTGGTTATTTTGGTCTCTTTACATGGAGTAG 3381 42.5 MAKPSKRQASSDEAMSNGSSSSEEEEQTNEQINEEEDEEELEAVARSAGSDEDEAADDSDNDASPVENGEEEDGSNDGQDDRTDISRREKARLREMQQMKKQKIQDMLDAQNAAIDADMNNKGKGRLKYLLQQTEIFAHFAKGDHSSSQKKTKGRGRHASKLTEEEEDEEYLKEEEDGLSGTGNTRLVSQPSCIQGKMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKSTLGNWMNEIRRFCPVLRAVKFLGNPDERRDIRENLLVAGKFDVCVTSFEMAIKEKTCLRRFSWRYIIIDEAHRIKNENSLLSKTMRLYNTNYRLLITGTPLQNNLHELWSLLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQKQYYRALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSAGKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMFRGYYYCRIDGNTGGEDRDASIDAFNRPGSEKFVFLLSTRAGGLGINLATADVVILYDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSSKDSTITDEDIDRIIAKGEAATAELDAKMKKFTEDAIKFKMDETAELYDFDDEKDENKFDFKKIVSENWIEPPKRERKRNYSESEYFKQTMRQGGPTKPKEPRIPRMPQLHDFQFFNTQRLSELYEKEVRYLMQTHQKNQLKDTIDVEEPEEVGDPLTAEELEEKERLLEEGFSSWSRRDFNTFIRACEKYGRNDIKSIASEMEGKTEEEVERYAKVFKERYKELNDYDRIIKNIERGEARISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMVHKLGYGNWDELKAAFRTSPLFRFDWFIKSRTTQELARRCDTLIRLVEKENQEHDERERQARKEKKLAKSMTPSKRSLARQTESPTNLKKRKQLSMDDYVNSMMRLRQNIENFASSATGQSYEEQAVDKLTTVSETRLVALELNLQPNARTWLFWSLYME 1126
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5867078 5875157 - CcPI632755_06g005400.1 Cco06g0540 181140

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0540 1126 Gene3D - 419 711 IPR027417 -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 142 184 - -
Cco06g0540 1126 SUPERFAMILY Homeodomain-like 852 902 IPR009057 -
Cco06g0540 1126 CDD DEXHc_SMARCA1_SMARCA5 195 415 IPR044754 GO:0005524(InterPro)
Cco06g0540 1126 Gene3D - 937 1040 - -
Cco06g0540 1126 SMART ultradead3 194 386 IPR014001 -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 53 78 - -
Cco06g0540 1126 CDD SF2_C_SNF 499 624 IPR049730 -
Cco06g0540 1126 Pfam SLIDE 906 1016 IPR015195 GO:0003677(InterPro)|GO:0005634(InterPro)|GO:0006338(InterPro)
Cco06g0540 1126 Gene3D - 199 414 IPR038718 -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 27 42 - -
Cco06g0540 1126 FunFam ISWI chromatin-remodeling complex ATPase CHR11 750 848 - -
Cco06g0540 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 415 695 IPR027417 -
Cco06g0540 1126 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 503 654 IPR001650 -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 1017 1055 - -
Cco06g0540 1126 FunFam Chromatin-remodeling complex ATPase 199 414 - -
Cco06g0540 1126 Gene3D ISWI, HAND domain 750 848 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Cco06g0540 1126 Pfam HAND 762 845 IPR015194 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Cco06g0540 1126 Pfam Helicase conserved C-terminal domain 500 613 IPR001650 -
Cco06g0540 1126 Pfam SNF2-related domain 201 478 IPR000330 GO:0005524(InterPro)|GO:0140658(InterPro)
Cco06g0540 1126 ProSiteProfiles SANT domain profile. 848 900 IPR017884 -
Cco06g0540 1126 FunFam ISWI chromatin-remodeling complex ATPase CHR11 isoform A 849 903 - -
Cco06g0540 1126 SUPERFAMILY HAND domain of the nucleosome remodeling ATPase ISWI 761 851 IPR036306 GO:0003677(InterPro)|GO:0006338(InterPro)|GO:0031491(InterPro)
Cco06g0540 1126 MobiDBLite consensus disorder prediction 1 90 - -
Cco06g0540 1126 Coils Coil 22 42 - -
Cco06g0540 1126 Gene3D - 849 903 - -
Cco06g0540 1126 SMART sant 849 898 IPR001005 -
Cco06g0540 1126 SMART sant 951 1012 IPR001005 -
Cco06g0540 1126 FunFam ISWI chromatin-remodeling complex ATPase CHR11 419 711 - -
Cco06g0540 1126 FunFam ISWI chromatin-remodeling complex ATPase CHR11 937 1040 - -
Cco06g0540 1126 Gene3D iswi atpase 904 936 - -
Cco06g0540 1126 Coils Coil 1010 1033 - -
Cco06g0540 1126 PANTHER CHROMODOMAIN-HELICASE-DNA-BINDING PROTEIN 3-RELATED-RELATED 4 1048 - GO:0000785(PANTHER)|GO:0003677(PANTHER)|GO:0003682(PANTHER)|GO:0005634(PANTHER)|GO:0006338(PANTHER)|GO:0006357(PANTHER)|GO:0016887(PANTHER)|GO:0034728(PANTHER)|GO:0042393(PANTHER)|GO:0140658(PANTHER)
Cco06g0540 1126 SUPERFAMILY Homeodomain-like 904 1026 IPR009057 -
Cco06g0540 1126 Coils Coil 93 113 - -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 9 26 - -
Cco06g0540 1126 SMART helicmild6 529 613 IPR001650 -
Cco06g0540 1126 MobiDBLite consensus disorder prediction 1017 1037 - -
Cco06g0540 1126 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 172 413 IPR027417 -
Cco06g0540 1126 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 210 375 IPR014001 -
Cco06g0540 1126 CDD SANT 852 896 IPR001005 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0540 K11654 - - csv:101221495 2000.71
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g1304 Cco-Chr5:13234206 Cco06g0540 Cco-Chr6:5867078 5.40E-31 dispersed
Cco05g1876 Cco-Chr5:27784448 Cco06g0540 Cco-Chr6:5867078 6.10E-114 dispersed
Cco06g0251 Cco-Chr6:2701783 Cco06g0540 Cco-Chr6:5867078 1.60E-96 dispersed
Cco06g0540 Cco-Chr6:5867078 Cco06g0607 Cco-Chr6:6617304 2.90E-137 dispersed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g350 . . . Bda08g00281 . . . Bma05g01060 Cmo08g01181 . . . . . . . . . . . . . . . Cla06g00499 Cam06g0536 Cec06g0536 Cco06g0540 Clacu06g0521 Cmu06g0523 Cre06g1293 . . . . . . Chy11g01479 . . . . . Bpe05g00850 . . . Sed09g0640 . . Cma08g01207 . Car08g01083 . . Cpe17g00005 Bhi12g02092 Tan06g2636 Cmetu11g0294 Lac12g2383 . . . . . . . . . . Lsi09g01406 . . Cme11g01986
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009268 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 2 2 1 1 1 1 1 1 1 1 2 1 1 34
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59469 PF00176 SNF2_N 2.60E-71 CL0023 Cco TR