Gene search
Sequence information

Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cco06g0552 | ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAAACCTTTTGGCCGCCTAGGAAGAGTGTTGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCTGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAGTGACACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA | 1134 | 46.91 | MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPESDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY | 377 |
Gff information

Chromosome | Start | End | Strand | Old_gene | Gene | Num |
---|---|---|---|---|---|---|
6 | 5948576 | 5951713 | - | CcPI632755_06g005520.1 | Cco06g0552 | 181152 |
Annotation information

Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cco06g0552 | 377 | CDD | F-box_AtTLP-like | 35 | 79 | - | - | |
Cco06g0552 | 377 | Gene3D | Tubby Protein; Chain A | 95 | 368 | IPR025659 | - | |
Cco06g0552 | 377 | SUPERFAMILY | Tubby C-terminal domain-like | 84 | 364 | IPR025659 | - | |
Cco06g0552 | 377 | ProSitePatterns | Tub family signature 1. | 316 | 329 | IPR018066 | - | |
Cco06g0552 | 377 | SUPERFAMILY | F-box domain | 26 | 78 | IPR036047 | GO:0005515(InterPro) | |
Cco06g0552 | 377 | Pfam | Tub family | 97 | 363 | IPR000007 | - | |
Cco06g0552 | 377 | PANTHER | TUBBY-RELATED | 22 | 366 | - | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 343 | 362 | IPR000007 | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 215 | 242 | IPR000007 | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 150 | 166 | IPR000007 | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 166 | 190 | IPR000007 | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 298 | 315 | IPR000007 | - | |
Cco06g0552 | 377 | PRINTS | Tubby superfamily signature | 316 | 332 | IPR000007 | - |
Duplication type information

Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
---|---|---|---|---|---|---|
Cco06g0552 | Cco-Chr6:5948576 | Cco08g0447 | Cco-Chr8:10908332 | 2.10E-108 | dispersed | |
Cco05g0677 | Cco-Chr5:5583842 | Cco06g0552 | Cco-Chr6:5948576 | 3.30E-165 | wgd |
Transcription factors information

Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
---|---|---|---|---|---|---|---|
59470 | PF01167 | Tub | 9.20E-96 | CL0395 | Cco | TF |
Pathway information

Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cco06g0552 | K19600 | - | csv:101203437 | 700.279 |