Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0552 ATGTCTCTCAAGAGCATCTTCCAAGATATGAGGTCCCGCTCACGCTGTGTGGTGCAGGACGCCTCCGCTCCGGAGCCCAGGGACGCTCTGGACCAAAGCTGTTGGGCCAATATGCCTCAGGAGCTTCTCCGGGAGGTTTTGATCAGAATCGAGGCGTCCGAAACCTTTTGGCCGCCTAGGAAGAGTGTTGTCGCTTGCGCCGGAGTGTGCCGGAGCTGGCGAGCCATTACTAAGGAGATCGTTAAAACGCCGGAGGTTTCCGGTAGGTTGACGTTCCCGATCTCTATCAAGCAGCCTGGTCCAAGGGATCCTCTTCTACAGTGTTTCATAAAGCGAAACAGATCCAATCAAACTTATTATCTCTTCCTCAGTTTGACCAGTGCACTAAGTGATGATGGTAAATTTCTACTTGCTGCACGCAAATGCAAGCGCCCGACCTACACAGATTATATTATCTCTTTACATGCTGAGGATTTGTCAAAGGGGAGCAGCACCTATGTTGGGAAATTGAGATCTAATTTCCTAGGAACCAAGTTCACAATCTTTGATGGGCAACCACCACATTCGGGAGCCAAGATCACTAAAAGTCGCTCCACAAGGCTAGTGAATCTGAAACAAGTTTCCCCGAAGGTCCCTGCAGGAAACTATCCAGTTGCACACATTTCATATGAACTAAATGTGTTGGGATCAAGGGGTCCAAGGAGAATGCAATGTATCATGGACGCTATTCCTGCTTCTGCAGTTGAACTTGGAGGAGTGGCTCCAACGCCGACCGAACTTTCTTTGAGCAATGTGGAATTGTTTCCATCATTCCCATTCCTAAGGTCAAAATCCAATGCGGATAGCTTGCTTTCTGAACCTTTGGGCAGTCAGAAAGATGGAATGTTGGTGCTGAGAAACAAAACTCCCAGGTGGCATGAACAGCTTCAATGCTGGTGTCTGAACTTTCATGGAAGAGTTACAATTGCTTCTGTGAAAAATTTTCAATTAGTTGCTTCTCCGGAAAGTGACACACCTACACCAGAACATGAGAAGATCATCCTTCAGTTTGGAAAAGTGGGGAAGGATTTATTCACAATGGATTATCACACATCGTTTAACAGGGAATGGACGCTCAATTTGAAGGTCTACTGA 1134 46.91 MSLKSIFQDMRSRSRCVVQDASAPEPRDALDQSCWANMPQELLREVLIRIEASETFWPPRKSVVACAGVCRSWRAITKEIVKTPEVSGRLTFPISIKQPGPRDPLLQCFIKRNRSNQTYYLFLSLTSALSDDGKFLLAARKCKRPTYTDYIISLHAEDLSKGSSTYVGKLRSNFLGTKFTIFDGQPPHSGAKITKSRSTRLVNLKQVSPKVPAGNYPVAHISYELNVLGSRGPRRMQCIMDAIPASAVELGGVAPTPTELSLSNVELFPSFPFLRSKSNADSLLSEPLGSQKDGMLVLRNKTPRWHEQLQCWCLNFHGRVTIASVKNFQLVASPESDTPTPEHEKIILQFGKVGKDLFTMDYHTSFNREWTLNLKVY 377
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 5948576 5951713 - CcPI632755_06g005520.1 Cco06g0552 181152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0552 377 CDD F-box_AtTLP-like 35 79 - -
Cco06g0552 377 Gene3D Tubby Protein; Chain A 95 368 IPR025659 -
Cco06g0552 377 SUPERFAMILY Tubby C-terminal domain-like 84 364 IPR025659 -
Cco06g0552 377 ProSitePatterns Tub family signature 1. 316 329 IPR018066 -
Cco06g0552 377 SUPERFAMILY F-box domain 26 78 IPR036047 GO:0005515(InterPro)
Cco06g0552 377 Pfam Tub family 97 363 IPR000007 -
Cco06g0552 377 PANTHER TUBBY-RELATED 22 366 - -
Cco06g0552 377 PRINTS Tubby superfamily signature 343 362 IPR000007 -
Cco06g0552 377 PRINTS Tubby superfamily signature 215 242 IPR000007 -
Cco06g0552 377 PRINTS Tubby superfamily signature 150 166 IPR000007 -
Cco06g0552 377 PRINTS Tubby superfamily signature 166 190 IPR000007 -
Cco06g0552 377 PRINTS Tubby superfamily signature 298 315 IPR000007 -
Cco06g0552 377 PRINTS Tubby superfamily signature 316 332 IPR000007 -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0552 Cco-Chr6:5948576 Cco08g0447 Cco-Chr8:10908332 2.10E-108 dispersed
Cco05g0677 Cco-Chr5:5583842 Cco06g0552 Cco-Chr6:5948576 3.30E-165 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59470 PF01167 Tub 9.20E-96 CL0395 Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0552 K19600 - csv:101203437 700.279