Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0563 ATGAGAGCTTCAAATCATGGCTTCCCCCTCTTCTCTGTACTGGTTTTCATTACTCTTCTTGCTCTTCAGGTTGTCAATGGAGATTTGATCAATAATTTCTATATGAAAAGCTGCCCCCAAGCTGAGAGAATCGTTCAAGACGTCACCTTTCGTCTCGTCCGATCCAATCCCAGCCTTAGCGCTCAACTCCTCAGACTTCACTACCACGACTGTTTCGTTCGAGGATGTGATGGATCAATTCTGTTAGATACCGTTGGAACAAACCAATCAGAGAAGGATGCAAGGCCGAACCTATCTCTATTAGGGTTTGATGTCATTGACCAAATCAAGTCCGAGGTTGAGAAAGCTTGCAGTGGAGTCGTTTCTTGTGCTGATATTCTTGCCCTTGCTGCCCGCGACGCAGTTTCCTTTCCGTCCAAAAACCGGCCGCTCTGGCCAGTCTTAACCGGAAGAAGAGATGGAACAGTTTCACGATCATCCGAAGTTACCGGTAATATGCCGTCGCCGTTCTCCGATTTCGCCACTCTTAAGCAAATCTTCGAGAAGAAAGGCCTAACTGTGAGCGATATGGTGATTTTATCAGGTGCTCACACCATTGGAGTTGCTCATTGTGGTGCATTCTCAAGGAGGCTTTATAACTTCACAGGCAAAGGAGATGCAGATCCCTCATTAGATCCAAAATATGCAGATTTTCTTAGAACAAAATGTCCAAATCCAGCTGACTCTTCCATTACAGTTGAAATGGATCCAAAGAGTTCTCGTTCTTTTGATAGTGACTATTTCAAAATTCTCACACAAAAAAAGGGTTTGTTTCAATCCGATGCCGCACTTCTCACCGACGCTTCGTCGTCTCAGACCGTCAAACAGTTGCAGAATCCAAAGGCTTTCTTTTCTAGCTTTGCTAATTCCATGGTGAAAATGGGAGCCATTGAAGCAATTTTTCCATGGATTGTCGTCGTTGCTATGCCACCGCCACCCGCCCCAACGCCGACGACGGCCTCCACGGTTCCAATCTACTCAACTCCAATCCACATTTTCAGCAAGACCATGTGTGTTGTTTATGAAGTATTCAAAGTCTCAATGCATTGTAAAGCATGCGAAAGAACTGTGGCCAAAGTCATTTCCAAATTCAAAGGGGTGGAGAAGTTTGTGACAGACATGAGAAAGCACAAGGTTGTAGTGATGGGGAAGTTTGATCCCCATAAAGTTATGAAGAAACTAAGAGAAAAGACAGGAAAAGCCGTTGAGATGGTGGTGGACAAAGGTTCAATGGTGAAAGATGCAACCGTTGCCAAGGATTTGGAGCGATCGGACCCGAATAATTCCAATCAGTTGATGATGTTAAATTGTTGCAAGGAGAGTGCTCAGTTGCTGGTTTTGTTCAGTGATGAGAATCCAAATGCTTGTTGCATTATGTAG 1419 44.54 MRASNHGFPLFSVLVFITLLALQVVNGDLINNFYMKSCPQAERIVQDVTFRLVRSNPSLSAQLLRLHYHDCFVRGCDGSILLDTVGTNQSEKDARPNLSLLGFDVIDQIKSEVEKACSGVVSCADILALAARDAVSFPSKNRPLWPVLTGRRDGTVSRSSEVTGNMPSPFSDFATLKQIFEKKGLTVSDMVILSGAHTIGVAHCGAFSRRLYNFTGKGDADPSLDPKYADFLRTKCPNPADSSITVEMDPKSSRSFDSDYFKILTQKKGLFQSDAALLTDASSSQTVKQLQNPKAFFSSFANSMVKMGAIEAIFPWIVVVAMPPPPAPTPTTASTVPIYSTPIHIFSKTMCVVYEVFKVSMHCKACERTVAKVISKFKGVEKFVTDMRKHKVVVMGKFDPHKVMKKLREKTGKAVEMVVDKGSMVKDATVAKDLERSDPNNSNQLMMLNCCKESAQLLVLFSDENPNACCIM 472
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6085878 6091474 + CcPI632755_06g005630.1 Cco06g0563 181163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0563 472 Pfam Heavy-metal-associated domain 356 411 IPR006121 GO:0046872(InterPro)
Cco06g0563 472 PANTHER PEROXIDASE 25-RELATED 30 312 IPR000823 GO:0004601(InterPro)|GO:0004601(PANTHER)|GO:0006950(PANTHER)|GO:0006979(InterPro)|GO:0009505(PANTHER)|GO:0009506(PANTHER)|GO:0020037(InterPro)
Cco06g0563 472 SUPERFAMILY Heme-dependent peroxidases 29 312 IPR010255 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 SUPERFAMILY HMA, heavy metal-associated domain 352 411 IPR036163 GO:0046872(InterPro)
Cco06g0563 472 CDD secretory_peroxidase 32 311 IPR033905 GO:0004601(InterPro)|GO:0042744(InterPro)
Cco06g0563 472 ProSitePatterns Peroxidases proximal heme-ligand signature. 189 199 IPR019793 -
Cco06g0563 472 FunFam Peroxidase 32 179 - -
Cco06g0563 472 CDD HMA 356 416 IPR006121 GO:0046872(InterPro)
Cco06g0563 472 Gene3D - 32 312 - -
Cco06g0563 472 FunFam Peroxidase 167 307 - -
Cco06g0563 472 Gene3D Peroxidase, domain 2 167 307 - -
Cco06g0563 472 PRINTS Plant peroxidase signature 247 262 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 263 280 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 302 315 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 38 57 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 120 130 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 101 114 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 62 82 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Plant peroxidase signature 188 200 IPR000823 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 ProSiteProfiles Heavy-metal-associated domain profile. 352 416 IPR006121 GO:0046872(InterPro)
Cco06g0563 472 Gene3D - 354 422 - -
Cco06g0563 472 PRINTS Haem peroxidase superfamily signature 249 264 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Haem peroxidase superfamily signature 60 74 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Haem peroxidase superfamily signature 189 204 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Haem peroxidase superfamily signature 141 153 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 PRINTS Haem peroxidase superfamily signature 121 138 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 ProSiteProfiles Plant heme peroxidase family profile. 28 310 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
Cco06g0563 472 Pfam Peroxidase 46 291 IPR002016 GO:0004601(InterPro)|GO:0006979(InterPro)|GO:0020037(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0911 Cco-Chr2:10993993 Cco06g0563 Cco-Chr6:6085878 2.70E-79 dispersed
Cco06g0563 Cco-Chr6:6085878 Cco08g1594 Cco-Chr8:27503485 6.90E-64 dispersed
Cco06g0561 Cco-Chr6:6067491 Cco06g0563 Cco-Chr6:6085878 5.90E-155 proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0563 K00430 - csv:101215642 510.76