Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0568 ATGGAGGTGGGGTTGATGCAGAGACAATGGGTTGAGTACACAAAGTCGTTATTCTTGGAGGAATTCTTGGACAGTCAGTTTATAGAGCTGCAGAAACTGCAAGATGAGGGCAACCCGGATTTCATTGTAGAAGTGGTTTCACTTTTCTTTGAGGATTCTGAGAGGCTTCTCAATGATCTCACCGCTGCGTTTGATCAACCTGATGTGGACTTTCAAAAGATTGATGGCCATGTTCACCAGCTTAAAGGAAGCAGTTCGAGCATAGGTGCCCAGAGAGTTAAAAATGTCTGTATTGCCATGCGCAGCTTCTGTGAGGAACAGAACATTGATGGGTGCCTGAGATGTCTGCAACAATTAAAGCAAGAGACCTGCCTAGTGAAAAACAAGCTTGAGAATCTATTCAGGATGGAGCAACAAATTGTGGCTGCTGGTGGGTCAATCCCTGCAACAGAATTGATATTCTAA 465 44.3 MEVGLMQRQWVEYTKSLFLEEFLDSQFIELQKLQDEGNPDFIVEVVSLFFEDSERLLNDLTAAFDQPDVDFQKIDGHVHQLKGSSSSIGAQRVKNVCIAMRSFCEEQNIDGCLRCLQQLKQETCLVKNKLENLFRMEQQIVAAGGSIPATELIF 154
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6124605 6126648 - CcPI632755_06g005680.1 Cco06g0568 181168

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0568 154 CDD HPT 44 122 IPR008207 GO:0000160(InterPro)
Cco06g0568 154 SUPERFAMILY Histidine-containing phosphotransfer domain, HPT domain 5 140 IPR036641 GO:0000160(InterPro)
Cco06g0568 154 Pfam Hpt domain 44 122 IPR008207 GO:0000160(InterPro)
Cco06g0568 154 FunFam Histidine-containing phosphotransfer protein 1 1 148 - -
Cco06g0568 154 Gene3D HPT domain 1 154 IPR036641 GO:0000160(InterPro)
Cco06g0568 154 ProSiteProfiles Histidine-containing phosphotransfer (HPt) domain profile. 38 143 IPR008207 GO:0000160(InterPro)
Cco06g0568 154 PANTHER PHOSPHORELAY INTERMEDIATE PROTEIN YPD1 6 146 IPR045871 GO:0000160(PANTHER)|GO:0000160(InterPro)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0009736(PANTHER)|GO:0009927(PANTHER)|GO:0009927(InterPro)|GO:0016310(PANTHER)|GO:0043424(PANTHER)|GO:0043424(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0568 K14490 - - csv:101216841 305.064
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco03g1725 Cco-Chr3:31989279 Cco06g0568 Cco-Chr6:6124605 5.10E-45 dispersed
Cco06g0568 Cco-Chr6:6124605 Cco09g0020 Cco-Chr9:151306 1.40E-29 dispersed
Cco07g1336 Cco-Chr7:27457952 Cco06g0568 Cco-Chr6:6124605 1.30E-31 transposed
Cco05g0667 Cco-Chr5:5416774 Cco06g0568 Cco-Chr6:6124605 2.50E-48 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g388 . . . . . Bpe14g01159 . . Cmo08g01164 Cmo17g00280 Cma06g01452 . Car06g01254 Car14g01488 . Cpe08g00223 Cpe03g01398 . . . . . . . Cla06g00522 Cam06g0561 Cec06g0561 Cco06g0568 Clacu06g0549 Cmu06g0545 Cre06g1314 Cone14ag0800 . . . . . Chy11g01453 Cme06g00676 Blo02g00569 . Bda11g00549 . . Bpe13g00640 . Bma06g01526 . Cmo06g01453 Cmo14g01698 . Cma17g00292 Car08g01069 Car17g00269 Cpe12g00244 Cpe17g00106 Bhi12g01760 . . . . . . Cla05g00602 Cam05g0663 Cec05g0672 Cco05g0667 Clacu05g0657 Cmu05g0626 Cre05g0695 Lsi09g01381 Csa03g01401 Chy06g00644 Cme11g01958
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000762 3 8 1 5 3 2 3 2 2 3 2 2 3 3 3 4 2 5 4 2 3 3 2 3 2 2 3 5 6 3 94