Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0574 ATGGGTTGTATCCATACAAAATGTTGCTGTCGCTACCCAAAATCGTTGGTTGGAGAATCCCAAGACTTTCGACAAGAGGTTCCTTACTGTCTTCAAGATAAGAACACTGTGATAGAGAAATCATTGGAGTTGATTCCTGTTGCTTCGCACAACTATCATTTGGAATACTTGGTACTGGCTCAGCGTGGTTACTACCCCGAATCTCCTGATAAAGAAAACCAAGACAGTTTCTGCATTCGAACAAATATTCAAGGTAACCCAAATGCCCATTTCTTTGGTGTTTTTGATGGGCATGGTCAATTTGGAATGCAGTGTTCAAATTTTGTGAAGGATAGACTAATAGAAAAGCTATGTAATGATCCCACATTCTTAGATGATCCAGTACAAGCTTATAATTCAGCATTTTTGTCTACAAATGATGAGTTACATACAAGTGAGATTGATGATTCCATGAGTGGAACAACTGCAATTACAGTTCTTGTTGTTGGGGATACCCTATATGTGGCTAATGTTGGGGATTCAAGAGCTGTAATTGCAGTTAAAGAAGGGGATAGTGTTCTTGCGAAGGACTTGTCTAATGATCAAACACCATTTAGAAAAGATGAGTATGAGAGAGTTAAGCTTTGTGGGGCTAGAGTTCTGAGTGTTGATCAAGTGGAAGGACTTGTGGATCCTGATATTCAATGCTGGGGCGATGAAGAAAGTCAGGGTGGCGATCCGCCTCGACTGTGGGTTCAAAATGGATTGTATCCTGGAACTGCGTTTACTAGGAGCATTGGTGATAGTACTGCAGAGAAGATTGGTGTAAATGCTGTTCCTGAGGTTTTAGTTCTTCAGCTTAACCCCAATCATCTTTTCTTTGTGGTTGCTAGTGATGGAGTTTTCGAGTTCCTTTCAAGTCAAACTGTTGTTGATATGGCATCGAGTTATGCAGATCCTCAAGATGCATGCACTGCCATTGCTGCCGAGTCGTATAAACTATGGATGGAACATGAAAATCGGACCGATGATATAACGATCATTGTTGTTCAAATCAAAGGCTTGTCTAATTCAGGTGCTGAGAATCCACACCTTTATAATGTGTTGCTATAA 1092 40.57 MGCIHTKCCCRYPKSLVGESQDFRQEVPYCLQDKNTVIEKSLELIPVASHNYHLEYLVLAQRGYYPESPDKENQDSFCIRTNIQGNPNAHFFGVFDGHGQFGMQCSNFVKDRLIEKLCNDPTFLDDPVQAYNSAFLSTNDELHTSEIDDSMSGTTAITVLVVGDTLYVANVGDSRAVIAVKEGDSVLAKDLSNDQTPFRKDEYERVKLCGARVLSVDQVEGLVDPDIQCWGDEESQGGDPPRLWVQNGLYPGTAFTRSIGDSTAEKIGVNAVPEVLVLQLNPNHLFFVVASDGVFEFLSSQTVVDMASSYADPQDACTAIAAESYKLWMEHENRTDDITIIVVQIKGLSNSGAENPHLYNVLL 363
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6181990 6184460 - CcPI632755_06g005740.1 Cco06g0574 181174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0574 363 FunFam Phosphatase 2C and cyclic nucleotide-binding/kinase domain-containing protein 50 347 - -
Cco06g0574 363 Gene3D - 48 347 IPR036457 -
Cco06g0574 363 SUPERFAMILY PP2C-like 48 347 IPR036457 -
Cco06g0574 363 ProSiteProfiles PPM-type phosphatase domain profile. 55 345 IPR001932 -
Cco06g0574 363 SMART PP2C_4 56 343 IPR001932 -
Cco06g0574 363 ProSitePatterns PPM-type phosphatase domain signature. 91 99 IPR000222 GO:0043169(InterPro)
Cco06g0574 363 Pfam Protein phosphatase 2C 72 323 IPR001932 -
Cco06g0574 363 CDD PP2Cc 71 345 IPR001932 -
Cco06g0574 363 PANTHER PROTEIN PHOSPHATASE 60 344 IPR015655 GO:0004722(InterPro)|GO:0004722(PANTHER)|GO:0006470(InterPro)|GO:0035970(PANTHER)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0574 Cco-Chr6:6181990 Cco11g0971 Cco-Chr11:15423598 1.30E-25 dispersed
Cco05g0657 Cco-Chr5:5346639 Cco06g0574 Cco-Chr6:6181990 5.50E-153 wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0574 - - - 0.0