Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0584 ATGCTGGCCGATCAGAGAAGAAAGTCGTCTATAGATGTGGATTTCTTCACAGAATATGGTGAAGGGAGCAGGTATAAAATAGAGGAAGTAATTGGTAAAGGAAGTTATGGTGTTGTTTGCTCTGCTTATGACACTCATACTGGAGAGAAAGTTGCAATTAAGAAAATCAACGATATCTTTGAGCATGTCTCTGATGCAACTCGCATTCTCCGTGAGATAAAACTTTTAAGACTATTGAGACATCCAGACATCGTGGAGATAAAGCACATCCTTCTACCTCCATCTAGAAGGGAATTCAAGGACATTTATGTTGTGTTTGAGCTCATGGAATCTGATCTACATCAAGTTATCAAAGCAAATGATGATTTGACTCCAGAACATTATCAGTTCTTTCTTTACCAGCTTCTTCGAGGCTTGAAATACATACACACAGCTAATGTCTTCCACCGGGACCTAAAACCAAAAAACATCTTAGCAAATGCTGACTGCAAACTCAAGATCTGTGACTTTGGTCTAGCACGCGTTGCATTTAATGATACTCCTACTGCTATTTTCTGGACTGACTATGTAGCAACAAGGTGGTACAGAGCTCCTGAACTCTGTGGTTCATTTTTCTCAAAGTATACACCAGCGATAGATATATGGAGCATTGGCTGCATCTTTGCGGAGCTTTTAACTGGAAAACCACTTTTCCCTGGAAAGAATGTCGTCCACCAATTAGATTTGATGACTGATTTTCTGGGAACCCCGAATGCAGAAGCCATTGCCAGGGTACGAAATGAGAAAGCTCGGAGATATTTAAGCAGTATGCGAAAGAAGAAGCCTGTTCCTTTCTCCCAGAAGTTTCCTCATGCAGATCCACTTGCACTTCACTTGTTGGAAAGAATGTTGGCTTTTGAGCCAAAGGATCGACCTACAGCAGAGGAGGCCCTTGCAGATCCATATTTTAAAGGCTTAGCGAAGGTTGAGAGAGAGCCATCTGCTCAACCTGTTACTAAGATGGAATTTGAATTTGAGAGACGAAGGATAACCAAAGAAGATGTAAGGGAGCTTATTTACCGGGAGATTCTCGAGTATCATCCAAAGATGTTGAAGGAATTCTTAGATGGATCAGAACCCACTGGTTTCATGTATCCAAGTGCGGTCGACCATTTTAAGAAGCAATTTGCGTTCCTTGAGGAACACTATGGAAATGGTGCAACTGTCGCTCCTCCTGAAAGACAACATGCATCCTTGCCTAGGCCATGTGTTTTATATTCAGATAACATGGTGCAGAACTCGGCCCAAGTTGCGAATGACCTATCCAAATGTTCCATCAAAGAAGTTGAGAGGCCACAAGTGGATAGGACTTGCAATATTCCTTTGGCTAGAGTTCCTATTCAAGTTCCTCAATCTATTCAAGCAGGCAATGGTGCAAGGCCTGGAAAAGTTGTTGGCTCCGTGTTGCGATACAACAACTGCGGAGCAACAGCAGCAGCAGTGGCACCAGAAGTTCTTGAACAGCGGAGGATGACCAGAAACCCTTCCATTCCACCACAGTACGCTGCTAATAACTGTTCATATCCAAGAAGAAACTCATCCTGTAAAAATGAAAGAACTGATGATGAAGCCATTGAAGGTCCAAACGGTTTGCAGGCAAAACCTCAGTACATAGCTAGAAAAGTTGCTGCTGCCCAAGGTGGACCAGGAAATAACTGCTTACCTGGCACTTGA 1713 42.85 MLADQRRKSSIDVDFFTEYGEGSRYKIEEVIGKGSYGVVCSAYDTHTGEKVAIKKINDIFEHVSDATRILREIKLLRLLRHPDIVEIKHILLPPSRREFKDIYVVFELMESDLHQVIKANDDLTPEHYQFFLYQLLRGLKYIHTANVFHRDLKPKNILANADCKLKICDFGLARVAFNDTPTAIFWTDYVATRWYRAPELCGSFFSKYTPAIDIWSIGCIFAELLTGKPLFPGKNVVHQLDLMTDFLGTPNAEAIARVRNEKARRYLSSMRKKKPVPFSQKFPHADPLALHLLERMLAFEPKDRPTAEEALADPYFKGLAKVEREPSAQPVTKMEFEFERRRITKEDVRELIYREILEYHPKMLKEFLDGSEPTGFMYPSAVDHFKKQFAFLEEHYGNGATVAPPERQHASLPRPCVLYSDNMVQNSAQVANDLSKCSIKEVERPQVDRTCNIPLARVPIQVPQSIQAGNGARPGKVVGSVLRYNNCGATAAAVAPEVLEQRRMTRNPSIPPQYAANNCSYPRRNSSCKNERTDDEAIEGPNGLQAKPQYIARKVAAAQGGPGNNCLPGT 570
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6267429 6272655 - CcPI632755_06g005840.1 Cco06g0584 181184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0584 570 ProSitePatterns MAP kinase signature. 60 163 IPR003527 GO:0004707(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0584 570 SMART serkin_6 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0584 570 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 22 357 IPR050117 GO:0004674(PANTHER)|GO:0004707(PANTHER)|GO:0005634(PANTHER)|GO:0005737(PANTHER)|GO:0035556(PANTHER)
Cco06g0584 570 Gene3D Phosphorylase Kinase; domain 1 40 361 - -
Cco06g0584 570 MobiDBLite consensus disorder prediction 522 542 - -
Cco06g0584 570 ProSiteProfiles Protein kinase domain profile. 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0584 570 ProSitePatterns Protein kinases ATP-binding region signature. 31 55 IPR017441 GO:0005524(InterPro)
Cco06g0584 570 Gene3D Transferase(Phosphotransferase) domain 1 111 339 - -
Cco06g0584 570 FunFam Mitogen-activated protein kinase 111 339 - -
Cco06g0584 570 Pfam Protein kinase domain 25 316 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0584 570 SUPERFAMILY Protein kinase-like (PK-like) 22 320 IPR011009 -
Cco06g0584 570 FunFam Mitogen-activated protein kinase 15 119 - -
Cco06g0584 570 CDD STKc_TDY_MAPK 24 361 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco01g1658 Cco-Chr1:29351806 Cco06g0584 Cco-Chr6:6267429 2.70E-186 dispersed
Cco06g0584 Cco-Chr6:6267429 Cco06g1633 Cco-Chr6:26950374 6.80E-207 dispersed
Cco06g0584 Cco-Chr6:6267429 Cco02g1964 Cco-Chr2:32571013 9.10E-212 transposed
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86909 PF00069 Pkinase 3.70E-68 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0584 - - - 0.0