Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0593 ATGGGCCGAATCAGTAAACTGTTGCTTTTCCTTGAGTACTGGGCCGGGCTTCTCACAAGAAAGTGGGCCGATGCCTTGGGCTTTGGTTTATGGGTCATGGTTGTCCAAATCAACCGGCCCAGAAAGCCGATTGGTTGTGGAAGGAAAGAAAAAAGAAATGTAACGATCCAATTGAGAAGAGAAGGAAATCTGGCAAACCTTGGAGGATTGAGGGCTCGCTTGTCGTTGAAGCATTCCATTTCTGATCACAACGACGACGAGGAGGAGTGCAGGCCTTGGCGTCGTCGGCTTTCTATGGCTTTCACATGGCGCTCTGCCCTCAAGATTATCCTCTTACTTCTACTTCTTGCTGCTGCTGTAACTGCCTGTTTCACCCTCCCAATCGAGAAGATTCTGAAGGACTTTTTACTATGGGTTCATGAGGATCTTGGCGCTTGGGGTCCACTTGTGCTGTCTGTTGCATACATTCCTTTGACAGTGCTGGCAGTTCCGGCCTCGATACTTACCCTTGGTGGTGGTTATCTATTTGGGTTACCTGTGGGCTTTGTTGCTGATTCGATTGGTGCAACTGTTGGGGCTGGGGCAGCTTTCCTTCTTGGACGAACTATTGGAAAGTCATTTGTTGTTTCCAAGCTGAAGGATTATCCACAGTTTCATTCGGTTGCAATTGCTATTAATCGGTCTGGATTTAAGATCGTTTTGCTGCTCCGGCTTGTACCTTTACTTCCGTTCAACATGTTGAATTACCTATTGTCCGTGACTCCTGTTTCACTAGGGGAATACATGTTGGCTTCATGGTTGGGAATGATGCCCATCACTCTTGCCTTGGTATATGTTGGAACCACACTCAAAGATTTGTCGGATGTCACCCATGGTTGGGGAGAGTTTTCGAAGACTCGTTGGGCGTTCATAATATTGGGTCTTGTGGTATCTGTGGTTCTGGCGTACTGTGTCACCAGAGTTGCTAAGGCTGCTTTGGAAAAAGCTTTGGCTGAGAACGGAGATGCTGTTGATTATTTGGGTCTCTCCTCGCAGCTACCCATTGTAGCTGAATCGCCTGTTGATCTTAACCAGCCTCTCATAATCAAGATTGACTCTCCTCAAGATGATCCATTGACAGGTTGCCATTGCGAAGGTGCTGCTCGTGTTGTTGACCATCGGCTAGCAAAGTGCCTCATCATTGATGAGCTTATCTTCAGTATGAAATCTACAGATTCATTAAGAATATTCAATGGCTTGGATTGTGGCCAACTTACTGCTGCACAAACAAAGATCAGAAACCATGTGATATGGGCATGCTTTTAG 1305 46.51 MGRISKLLLFLEYWAGLLTRKWADALGFGLWVMVVQINRPRKPIGCGRKEKRNVTIQLRREGNLANLGGLRARLSLKHSISDHNDDEEECRPWRRRLSMAFTWRSALKIILLLLLLAAAVTACFTLPIEKILKDFLLWVHEDLGAWGPLVLSVAYIPLTVLAVPASILTLGGGYLFGLPVGFVADSIGATVGAGAAFLLGRTIGKSFVVSKLKDYPQFHSVAIAINRSGFKIVLLLRLVPLLPFNMLNYLLSVTPVSLGEYMLASWLGMMPITLALVYVGTTLKDLSDVTHGWGEFSKTRWAFIILGLVVSVVLAYCVTRVAKAALEKALAENGDAVDYLGLSSQLPIVAESPVDLNQPLIIKIDSPQDDPLTGCHCEGAARVVDHRLAKCLIIDELIFSMKSTDSLRIFNGLDCGQLTAAQTKIRNHVIWACF 434
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6417635 6424322 + CcPI632755_06g005930.1 Cco06g0593 181193

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0593 434 Pfam VTT domain 163 281 IPR032816 -
Cco06g0593 434 PANTHER UNCHARACTERIZED 99 363 IPR015414 GO:0016020(PANTHER)|GO:0016020(InterPro)
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0593 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco08g0169 Cco-Chr8:2726545 Cco06g0593 Cco-Chr6:6417635 5.60E-20 transposed
Cco05g0642 Cco-Chr5:5228582 Cco06g0593 Cco-Chr6:6417635 4.20E-106 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g430 . . . Bda08g00391 . . . Bma05g00944 Cmo08g01142 Cmo17g00258 Cma06g01436 . Car06g01238 . Sed12g0891 Cpe08g00239 . Bhi01g00861 Tan10g0891 Cmetu06g1295 Lac12g2330 Hepe05g1520 . Lcy11g1504 Cla06g00545 Cam06g0588 Cec06g0585 Cco06g0593 Clacu06g0575 Cmu06g0569 Cre06g1335 Cone14ag0821 . . Cone4ag0205 Lsi05g01458 . Chy11g01431 Cme06g00648 . . . . Bpe05g00755 . . . . Cmo06g01439 . Cma08g01169 Cma17g00271 Car08g01047 Car17g00246 Cpe12g00224 Cpe17g00125 Bhi12g01799 . . . . . . Cla05g00580 Cam05g0638 Cec05g0647 Cco05g0642 Clacu05g0632 Cmu05g0600 Cre05g0669 Lsi09g01357 Csa03g01374 Chy06g00617 Cme11g01936
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0001200 4 7 2 5 2 2 3 2 2 2 1 2 3 2 2 3 2 3 3 2 2 2 2 2 2 2 2 2 5 2 77