Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0604 ATGCAAGATTTCTTCGGATCTGTTCGTCGATCCTTAGTATTTCTAGCTCCCGACGGTGACGACGGTGGGAGGTTCGGTGGCCTTGTCGAGAAGATCGGCTCTAGCATCCGTAAATCTCGAAATGGACTGTTTTCTAAACAGTCACTGCGGGCTCTGCCTCCGGTTGCGAAGGAAGATGCACCTCCGATTTGGTGGCGGAAGGGAGAGTTGATCGGATGTGGTGCTTTTGGTCGAGTTTATATGGGGATGAATCTCGATTCTGGAGAGCTTCTTGCAGTCAAACAAGTCTCAATTGCGGCTAATAGTGCTTCAAGGGAGAAAGCCCAAGCTCACATACGGGAGCTGGAGGAGGAAGTGAGGCTTTTGAAGAATCTTTCTCACCCCAATATTGTGAGATATCTGGGAACTGCAAGAGAAGAAGATTCATTAAATATTCTATTGGAGTTTGTTCCTGGAGGATCAATATCTTCTTTGTTAGGGAAATTTGGGTCTTTCCCCGAGTCTGTTATAAAGACCTACACTAAGCAGCTATTATTGGGGCTTGAGTACCTTCATAAGAACGGCATCATGCATAGGGATATAAAGGGTGCAAATATTCTTGTAGACAATAAGGGGTGTATTAAACTTGCAGATTTTGGTGCATCCAAGAAAGTGGTTGAGCTGGCAACTATAAATGGAGCCAAATCAATGAAGGGTACTCCATATTGGATGGCTCCTGAAGTTATTCTCCAGACTGGTCATAGCTTTTCTGCTGATATATGGAGTGTGGGGTGTACTGTTATTGAAATGGCAACAGGAAAACCTCCATGGAGCCAACAGTATCAAGAGGTCGCTGCTCTTTTCCATATAGGAAATACTAAGTCCCATCCGCCCATTCCTGAGAATCTATCTGCTGAGGCTAAAGATTTTCTGTTAAAATGTCTACAAGAGGAACCAAACTCAAGGCCTACTGCATCAGATTTGCTGCAGCATCCATTTGTCTCATGTGAGTATCAAGAACCTGTTGCAGTAGTCCTTGCCTCTTCTGTGGAATCTGGGAAACAGATGGCTGATTCTAGGCTGAACTCCAATGATCTTAAAAAGTCTACAATCCAACGTTCAACCTGTGAGGGCTTGAAAGATATTTGTGAAATGGGTAGCTTGAGGTGCTCTTCTGTATTTTCTGGGAACTATGGGTCACAGTCCAACTGGGGCTTGAGCAATTTTGAGGATGACATGTGCCAGATAGATGATAAAGATCTGTTTGTTAATTCATCAATGAAGTACAAATCTATTTTATCATCAACCGATTTGAATAAGAGTTTCAATCCTATGTGTGAACCCACTGATGACATGGATGAGAGCTCAGAGTTGGGAGGCAATTTAATGGAATTGTCTGGCGTTCAAACTGGCAAGGGGAGTGACTTCACTTTTCCTTGTGGTCAATCAGCAGCTGAGGATGATGAAGAGGTTACGGAATCAAAGATTAAAGCCTTCCTGGATGAGAAGGCTCTAGAACTAAAGAAGCTGCAAACACCTTTATACGAAGAGTTCCGAAGCACAGTTAATGCAGCTAATGCATTAGGAACAGTTGGAATTGAGAATATCAAGAGCGTGTCTAAGTTTTTGAAATTGCCTCCCAAATGTGGGTCACCAAGTAAGCTGCGTGGTAAAAGACTCTCATCAATTGATGCTGGTAACTGTTCCAGCCTTCAGAGCCGTATAAAACAAGCTGGCATATTGCAAGATCGAGCTCTGCAGGAAATTCAGTCGCCACAACTTGGGGAATGGAACAACTTACTTCAAACCCAGCCAGACTCTTCTACACCAAGTTTCTCTGAAAGACAAAGGAAATGGAAAGAAGAGCTTGAGGAAGAACTTAAAAGGAAACGAGAAATGATGCGGAGAGGAATTGTAGGAGCAATTCACTAA 1911 43.38 MQDFFGSVRRSLVFLAPDGDDGGRFGGLVEKIGSSIRKSRNGLFSKQSLRALPPVAKEDAPPIWWRKGELIGCGAFGRVYMGMNLDSGELLAVKQVSIAANSASREKAQAHIRELEEEVRLLKNLSHPNIVRYLGTAREEDSLNILLEFVPGGSISSLLGKFGSFPESVIKTYTKQLLLGLEYLHKNGIMHRDIKGANILVDNKGCIKLADFGASKKVVELATINGAKSMKGTPYWMAPEVILQTGHSFSADIWSVGCTVIEMATGKPPWSQQYQEVAALFHIGNTKSHPPIPENLSAEAKDFLLKCLQEEPNSRPTASDLLQHPFVSCEYQEPVAVVLASSVESGKQMADSRLNSNDLKKSTIQRSTCEGLKDICEMGSLRCSSVFSGNYGSQSNWGLSNFEDDMCQIDDKDLFVNSSMKYKSILSSTDLNKSFNPMCEPTDDMDESSELGGNLMELSGVQTGKGSDFTFPCGQSAAEDDEEVTESKIKAFLDEKALELKKLQTPLYEEFRSTVNAANALGTVGIENIKSVSKFLKLPPKCGSPSKLRGKRLSSIDAGNCSSLQSRIKQAGILQDRALQEIQSPQLGEWNNLLQTQPDSSTPSFSERQRKWKEELEEELKRKREMMRRGIVGAIH 636
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6570251 6575097 + CcPI632755_06g006040.1 Cco06g0604 181204
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0604 636 ProSiteProfiles Protein kinase domain profile. 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0604 636 Gene3D Transferase(Phosphotransferase) domain 1 65 368 - -
Cco06g0604 636 FunFam Serine/threonine-protein kinase STE11 62 155 - -
Cco06g0604 636 ProSitePatterns Protein kinases ATP-binding region signature. 71 94 IPR017441 GO:0005524(InterPro)
Cco06g0604 636 CDD STKc_MAPKKK 65 327 - -
Cco06g0604 636 ProSitePatterns Serine/Threonine protein kinases active-site signature. 189 201 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0604 636 Pfam Protein kinase domain 66 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0604 636 SMART serkin_6 65 327 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0604 636 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 53 328 IPR050538 -
Cco06g0604 636 Coils Coil 606 629 - -
Cco06g0604 636 Coils Coil 98 125 - -
Cco06g0604 636 SUPERFAMILY Protein kinase-like (PK-like) 65 328 IPR011009 -
Cco06g0604 636 FunFam Mitogen-activated protein kinase kinase kinase 2 64 356 - -
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0604 Cco-Chr6:6570251 Cco08g1740 Cco-Chr8:28648494 2.40E-59 dispersed
Cco10g0444 Cco-Chr10:5243342 Cco06g0604 Cco-Chr6:6570251 8.90E-25 dispersed
Cco01g0535 Cco-Chr1:5168082 Cco06g0604 Cco-Chr6:6570251 5.40E-37 transposed
Cco02g1704 Cco-Chr2:29775836 Cco06g0604 Cco-Chr6:6570251 1.20E-205 transposed
Cco04g0809 Cco-Chr4:23409320 Cco06g0604 Cco-Chr6:6570251 4.10E-06 transposed
Cco06g0246 Cco-Chr6:2626932 Cco06g0604 Cco-Chr6:6570251 1.30E-06 transposed
Cco10g1179 Cco-Chr10:24408409 Cco06g0604 Cco-Chr6:6570251 2.70E-63 transposed
Cco02g1754 Cco-Chr2:30303719 Cco06g0604 Cco-Chr6:6570251 4.00E-26 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86910 PF00069 Pkinase 3.30E-73 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0604 K20606 - csv:101217427 1199.88