Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0606 ATGACGATGGCGATACCAGGGAGCATTGTCGTTGTTCTTCTCCTTATGTTGCTTCTCATCATCCTCCTCCTCCTCATTGCCTGCAAACCATGGCGTTTCTTTTCCTATTCCCGTTCTCGCACAATCAAGGTTTCTGACCTTGAGAGACCCCTTGTCTCTGATGCTGCAGATGTCACTCAAAACCAATTCAGTGAGGTTCCCAGAGATTATGATCTGGAGGGTGCACTTCAAACTGATGGACATTTTCGGTCCCCGAGATTACATGGACTGATTCATAAACAAAGACTGCCACCTTTGTCTCCCCATTCAAGTCAGGGTGATAGATTGGTTCCAGATGTAGTTCCCGACCCTTTGGAAGTTATTTCAGTTGGTCAAACCCTTAAACGTACTTACTTTGCAAACCAGGTTCCAGAAGTTCAAAAGCATGCAAAACTGAGCCTAGGAAGTGATCAACTCCACGAAATTGCAAGTCAAGATATCTCACATGGAAGAAGTTACCTCACTTTGGAGGTCACCTCCGGTCCTTCTCGTGGAGTGCGTTATTCAATTCATTCTGCAAACACGTCTAGGCTTCCTTTGACTCTTGGAAGAGTACCTCCTAGTGATTTACAGTTGAAGGATTCCGAAGTCTCAGGGAAGCATGCCTTGATAAAATGGAATCTAAATAATATGAAATGGGAGCTTGTGGACCTGGGTAGCTTAAATGGGACCTTATTAAATTCTCAACCAATCAACAATCCTGATTCTGGAAGTAGACATTGGGGTGACCCAGTTGAGCTTACGAGTGGAGATGTTATAACTCTTGGTACAACCTCCAAAGTGTATGTTCATATTACATCTCAGATTGAGAACCATATTCCTTTTGGAGTTGGTTTGGCTTCAGATCCAATGGCTTTACGTCGTGGTGGAAAGAAGCTTGCCATGGAAGATGTTTGCTATTATCAATGGCCACTTCCTGGGGTTGCTCAGTTTGGACTCTTTGGTATCTGCGATGGGCATAGTGGAGTAGGGGCTGCCAAATCTGCTAGCGAGATTCTTCCGGAGAAGGTTGCCACAATTCTATCAGATCCACTGAAAAGGGAGAGGGTAGTATCTCTTCGTGATGCTTCAGATGTGCTTAGAGAAGCATTTTCTCAGACTGAGGCTTGCATGAATCACTATTATGAGGGTTGTACTGCCACGGTGCTTTTAGTATGGGCTGATAGTGATGAAAATTTCTTTGTGCAATGTGCGAACGTTGGGGACTCTGCTTGTGTTCTCAATGTTCATGGGAAGCAGATGAAGATGACAGAAGATCACAGAATAACTAGCTATTCAGAGAGACTCCGAATAGAACAAGCAGGAGAACCATTGAAAGATGGAGAGACACGTTTGTGTGGCTTGAACCTTGCAAGGATGCTTGGTGACAAGTTTCTTAAACAACAAGACCATCGTTTCAGTTCAGAACCTTATATAAGTGAAGTTGTCCATGTAGATCAAGGAAGCAAAGCTTTTGCAGTGATGGCAAGTGATGGCTTTTGGGATGTGATTGGTGTGAAGAAGGCAATTCAGCTGGTTCTTCAGGCTAGGGAGAAATACTCCACAAGTGCAGAAAATTCAGCCGAAAAGGTTGCAAATTTTTTGTTGGGGGAGGCTAGAACACTGCGTACAAAAGATAATACATCCATAATTTTCTTAGATTTTGAGATTTCTCATAGAATCACTTGTAAAGTTGAACCATAA 1722 43.32 MTMAIPGSIVVVLLLMLLLIILLLLIACKPWRFFSYSRSRTIKVSDLERPLVSDAADVTQNQFSEVPRDYDLEGALQTDGHFRSPRLHGLIHKQRLPPLSPHSSQGDRLVPDVVPDPLEVISVGQTLKRTYFANQVPEVQKHAKLSLGSDQLHEIASQDISHGRSYLTLEVTSGPSRGVRYSIHSANTSRLPLTLGRVPPSDLQLKDSEVSGKHALIKWNLNNMKWELVDLGSLNGTLLNSQPINNPDSGSRHWGDPVELTSGDVITLGTTSKVYVHITSQIENHIPFGVGLASDPMALRRGGKKLAMEDVCYYQWPLPGVAQFGLFGICDGHSGVGAAKSASEILPEKVATILSDPLKRERVVSLRDASDVLREAFSQTEACMNHYYEGCTATVLLVWADSDENFFVQCANVGDSACVLNVHGKQMKMTEDHRITSYSERLRIEQAGEPLKDGETRLCGLNLARMLGDKFLKQQDHRFSSEPYISEVVHVDQGSKAFAVMASDGFWDVIGVKKAIQLVLQAREKYSTSAENSAEKVANFLLGEARTLRTKDNTSIIFLDFEISHRITCKVEP 573
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6607374 6613267 + CcPI632755_06g006060.1 Cco06g0606 181206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0606 573 ProSiteProfiles PPM-type phosphatase domain profile. 289 561 IPR001932 -
Cco06g0606 573 PANTHER PROTEIN PHOSPHATASE 2C 302 561 IPR015655 GO:0004722(InterPro)|GO:0006470(InterPro)|GO:0006470(PANTHER)
Cco06g0606 573 SMART PP2C_4 283 559 IPR001932 -
Cco06g0606 573 CDD FHA_PP2C70-like 167 277 - -
Cco06g0606 573 ProSiteProfiles Forkhead-associated (FHA) domain profile. 193 244 IPR000253 GO:0005515(InterPro)
Cco06g0606 573 Pfam FHA domain 194 269 IPR000253 GO:0005515(InterPro)
Cco06g0606 573 FunFam Protein phosphatase 2C 70 162 296 - -
Cco06g0606 573 SUPERFAMILY SMAD/FHA domain 166 277 IPR008984 GO:0005515(InterPro)
Cco06g0606 573 FunFam Protein phosphatase 2C 70 297 568 - -
Cco06g0606 573 Gene3D - 296 563 IPR036457 -
Cco06g0606 573 Pfam Protein phosphatase 2C 300 554 IPR001932 -
Cco06g0606 573 SMART FHA_2 192 244 IPR000253 GO:0005515(InterPro)
Cco06g0606 573 SUPERFAMILY PP2C-like 302 561 IPR036457 -
Cco06g0606 573 CDD PP2Cc 301 561 IPR001932 -
Cco06g0606 573 Gene3D - 161 295 - -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0606 K01090 - csv:101217195 1040.02