Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0608 ATGGCGATTTCTGCTTTCCTCTTCCTCTTCCTCTTCCTCTCCTTCTCCTTCTCCTTCTTCCCCTCTTCTCATTCCCTCAAAGGCTATTTCATCGACTGCGGCTCCACTTCTCCCACCACACTCGACGGCCGCACCTGGCAACCCGACTCCGCCTTCGTCTTCGCTGGAACCAACAAGAACATCACCGACCCCGTTCTTGACCCTACGCTTTCCACTGTCCGCTCCTTTCCTAGGGCTCTTAATCGGAAATTTTGCTATGTTGTTGGACCTGTCTTTCGTACTCGGAGATATATGGTTAGAACCACGTATTACTACGGTGGAGTTAACGGCCTTGATTCCCCGCCGGTTTTCGATCAGATTGTTGATGGGACTGTTTGGAGCGTGGTGAATACTACCGAGGATTATGATAGGGGATTGACCTCGTATTACGAGGGGGTTTTTGAAGCCAAGGGGAAGTCCATTAGTGTGTGCATTGGTTCTAATACGTATACGGATTCTGACCCTTTTATTTCTGCCTTGGAGGTTGTCTTGTTGGGGGAATCTCTTTATAATACTACGGATTTCGTTAACCACGGCCTGCGTCTGGTTGCTAGGCACAGTTTTGGATACACTGGATCCAACTTACGGTATCCTGATGACGAATTTGATCGGTTTTGGCAACCATTTGGGAATAACAATTGGAATGTAACCAATAGAACTGTATTTGCCTCTGGTATATGGAATCTCCCTCCATCTAAGATATTTGAAACAGAGCTGAGGACTGATAACCTGGAACCATTGGAGTTGAACTGGCCTCTTATTTCTCTTCCAGAAACAAATTTAACATATTACATTGCTCTATACTTTGCCAATGATCATCCTTCATCATCAGATAACTCAAGGGTGTTTAGCATAAGTCTGAATGGTATAACATATTACCATGATCTAAATGCAACTTCGGCAGGCCATGTTGTTTTTGCAAGTCGGTGGCCTCTTCATGGTCCAACAAAGATAACCTTGACTCCCTCTCCTCAGTCAAAACTTGGCCCATTGATCAATGGTGGAGAACTTTTTCACGTTGTGCACCTTGAAGCAAGAACTCTTGTAAGAGATGTTATCAATCTGGAGAGAATAAAAAGGAGTCTGAAAAATCCCCCAACTGATTGGATTGGTGATCCGTGCTTCCCCCAACAATATCGCTGGACAGGAATTACATGTTCTGAAGGTTCTCGAATTCGTGTGATTACCTTAAACCTCACGAGTATGGACCTTTCAGGATCCTTATCACCTAGCATTGCCAATCTTACTGCATTGTCTGGAATCTGTCTTGGAAACAACAGTTTGTCTGGACCTATTCCCGATCTCAGTGCTCTGAAGTTGTTGGAAATAGTGCATTTGGAAGATAATAATTTCAGTGGAGAGATCCCATCATCACTTGGGAATCTGCCTCACTTGCAGGAACTGTTCTTATACAATAATAATCTGACTGGTGAAGTTCCTCAAAGTCTTACGAATAATGAACGACTGGATCTTAGGTACTTGTTAACTGCCCAGAAACTTTTACATCAAAGCTTACCAGTTTTTGGGAAGGAACAGTTAAAACATTTTAAGCTATACAGCTTCTGCACCACTGCTTCGCAATTCATAAATGGTGGGGGTATCATTGAGCCATCAAAGTTATGGAGTCTCCATGATCAACACATGGAGCTTCTAGGACCATTTAATTTCTTACAGAAAGCTATTCAGCTTCAGGTTCCATTCTGA 1743 43.55 MAISAFLFLFLFLSFSFSFFPSSHSLKGYFIDCGSTSPTTLDGRTWQPDSAFVFAGTNKNITDPVLDPTLSTVRSFPRALNRKFCYVVGPVFRTRRYMVRTTYYYGGVNGLDSPPVFDQIVDGTVWSVVNTTEDYDRGLTSYYEGVFEAKGKSISVCIGSNTYTDSDPFISALEVVLLGESLYNTTDFVNHGLRLVARHSFGYTGSNLRYPDDEFDRFWQPFGNNNWNVTNRTVFASGIWNLPPSKIFETELRTDNLEPLELNWPLISLPETNLTYYIALYFANDHPSSSDNSRVFSISLNGITYYHDLNATSAGHVVFASRWPLHGPTKITLTPSPQSKLGPLINGGELFHVVHLEARTLVRDVINLERIKRSLKNPPTDWIGDPCFPQQYRWTGITCSEGSRIRVITLNLTSMDLSGSLSPSIANLTALSGICLGNNSLSGPIPDLSALKLLEIVHLEDNNFSGEIPSSLGNLPHLQELFLYNNNLTGEVPQSLTNNERLDLRYLLTAQKLLHQSLPVFGKEQLKHFKLYSFCTTASQFINGGGIIEPSKLWSLHDQHMELLGPFNFLQKAIQLQVPF 580
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6626869 6631714 + CcPI632755_06g006080.1 Cco06g0608 181208

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0608 580 SUPERFAMILY L domain-like 389 503 - -
Cco06g0608 580 Gene3D Ribonuclease Inhibitor 364 538 IPR032675 -
Cco06g0608 580 PANTHER OS07G0107800 PROTEIN-RELATED 29 474 - -
Cco06g0608 580 Pfam Malectin-like domain 31 353 IPR024788 -
Cco06g0608 580 FunFam Leucine-rich repeat receptor-like kinase 363 475 - -
Cco06g0608 580 Pfam Leucine Rich Repeat 454 475 IPR001611 GO:0005515(InterPro)
Cco06g0608 580 Pfam Leucine Rich Repeat 477 498 IPR001611 GO:0005515(InterPro)
Cco06g0608 580 Gene3D - 201 350 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0608 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco02g0640 Cco-Chr2:6354961 Cco06g0608 Cco-Chr6:6626869 3.80E-124 dispersed
Cco06g0608 Cco-Chr6:6626869 Cco09g0035 Cco-Chr9:315591 3.60E-38 dispersed
Cco06g0608 Cco-Chr6:6626869 Cco05g2886 Cco-Chr5:36430439 1.00E-40 transposed
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g465 . . . . . Bpe14g01176 . . Cmo08g01131 . . . . . . . . . . . . . . . Cla06g00563 Cam06g0603 Cec06g0603 Cco06g0608 Clacu06g0589 Cmu06g0584 Cre06g1350 . . Cone7ag0236 Cone4ag0226 . . . . Blo02g00551 . . Bda13g00134 . . . . . . . Cma08g01159 . Car08g01036 . . Cpe17g00137 Bhi12g01823 . . . Hepe03g0115 . . . . . . . . . . . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0008562 2 1 1 0 1 1 1 1 1 1 1 1 1 1 1 1 1 2 1 1 1 1 1 1 1 0 1 1 6 1 35