Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Cco06g0613 | ATGCTGTCGAATCAGCTACAAAATGGAATGGACAGAGCAAAAAACATGTGGTCTCGTCTTCCGAACACCGACGAAAATGAGGATGACCTTGTTAGTATCTTGAAGAAGAACGATGGGGGTGGCGTCGAAAGCCTTGATTATGAGGTCATCGAGAATTATGCTTACTGGGATGAGCAGGCGCAAAGAGGGAAATTATTTGTTGGTTATAGCGTGGCAGTTAAGTGGCTGTATGCTTTGTTCATAGGCATTGGCACAGGATTGGCTGCAGTTTTCATTAATATGGCTGTTGAGAACTTTGCTGGCTGGAAATTTTCATTGACATTTGCCCTAATTCAAAAGTCATATGTGGCTGGCTTTATAGTATACTTAGCAATCAACTTGGGTCTAGTGTTTTCATCTGTATATATAGTCACACACTTTGCTCCTGCAGCAGCTGGATCTGGCATACCTGAAATCAAGGGCTATTTGAATGGAATTGACATACACGGTGTCCTTTTCTTCAGAACCTTAATTGGAAAGATATTTGGAAGCATTGGTTCAGTGGGAGGTGGATTAGCTTTAGGCAAAGAAGGGCCTCTTGTACATACAGGCGCTTGCATTGCTTCTTTGTTAGGACAAGGTGGATCTGCTAAATATCATCTAAATTCCAGGTGGTTACAAGTGTTCAAGAGTGACCGGGATCGTCGTGATCTTGTAACCTGTGGGTGTGCAGCAGGAGTTGCTGCAGCTTTTAGAGCTCCAGTTGGTGGTGTATTATTCGCACTGGAAGAAGTAACATCTTGGTGGAAGAGTCAACTTTTGTGGCGTGTGTTTTTCACTTCTGCTGTGGTGGCTGTTGTGGTGCGGGCAGCTATGGGATGGTGTAAGAGTGGGAAGTGTGGACATTTTGGTTCTGGTGGTTTCATAATATGGGACATATCAGATGGCCAAGAGGACTATTCTTTTGGGGAGTTGTTGCCCATGACTGTGATTGGGGTTATTGGAGGCTTATTAGGAGCATTATTCAACCAGCTTACTCTTTACATTACTTATTGGCGACGAAACCATTTGCACAAGAAGGGGAACCGAGTCAAGATCATTGAGGCTTGTCTCATCTCAGTATTGACATCAATTATTTCCTTCGGACTACCACTTCTAAGGCAATGTACTCCATGCCCCAAACCTGATCCTGAATTAGGAAATGAATGCCCAAGGCCTCCAGGAACATATGGGAATTATGTTAATTTTTATTGCAGTAAGGACAATGAATACAATGACCTTGCAACCATCTTCTTTAACACCCAGGATGATGCCATAAGGAATTTGTTCAGTGCAAAAACAATGCATGAATTCAGTGCGCGGAGTTTATTGACCTTTCTGGTTATGTTTTATACTTTAGCTGTCGTGACATTTGGCACTGCAGTTCCTGCTGGTCAATTTGTTCCTGGTATAATGATTGGATCTACGTATGGACGTTTGGTTGGAAAGTTTGTTGTTAGTTTCTACAAGAAGCCCAACATTGAAGAGGGAACATATGCCTTGTTGGGTGCTGCATCTTTTCTGGGAGGCTCTATGCGAATGACAGTGTCTCTGTGTGTCATCATGGTTGAAATTTCAAACAATTTGAAATTTTTACCACTCATCATGCTTGTACTTCTGATGTCCAAGGCTGTTGGTGATGCCTTTAATGAAGGCCTGTATGAAGAGCAAGCCCAGTTGAGGGGTATTCCATTACTGGAATCAAGACCAAAGTACCAGATGCGGAAAATTACAGCAAAGGAAGCGTGTGGAAAAAGGGTTGTCTCCTTCCCCCGTGTTGTTAAGGTTGCTGATGTTGTTAGTATTTTACGGAGCAACCGACATAATGGCTTTCCTGTGATTGATTACTCTCGAAATGGAGAAACGCGTGTCATTGGACTAATGCTTAGAAGTTACTTATTAGGACTTCTGCAGTCCAAAGTAGATTTTCAGCACAGTCCCGTGCCTTCTGATCCAAGAGGATCTATATCAAGCAGGCACAATTTCAGTGAATTTGTGAAACCTGCTTCCAGTAAAGGAATTTCTATTGATGATATAAATCTTAGTTCAGAGGACTTGGAAATGTACATTGATCTACTTCCATATCTGAATCCATCTCCATATATTGTCCCAGAGGATATGTCTCTGACAAAGGTCTATAATCTTTTCCGGCAACTAGGTCTGAGACACGCATTTGTTGTTCCCCGTCCATCAAATGTGGTTGGTTTGATTACTCGAAAGGATTTGTTGATAGAGGATAGCGAAGATTCGGATGCAATGGAACTACAATCGACTAGTGTAAGAGCTCGTCGTCCAGATAGAAGAGTACATACAAGGAATGGGGATGTAGAGAGCCCACTTCTTAATGGACTTCTGGACAATAGCACAGATGGCTAA | 2394 | 42.48 | MLSNQLQNGMDRAKNMWSRLPNTDENEDDLVSILKKNDGGGVESLDYEVIENYAYWDEQAQRGKLFVGYSVAVKWLYALFIGIGTGLAAVFINMAVENFAGWKFSLTFALIQKSYVAGFIVYLAINLGLVFSSVYIVTHFAPAAAGSGIPEIKGYLNGIDIHGVLFFRTLIGKIFGSIGSVGGGLALGKEGPLVHTGACIASLLGQGGSAKYHLNSRWLQVFKSDRDRRDLVTCGCAAGVAAAFRAPVGGVLFALEEVTSWWKSQLLWRVFFTSAVVAVVVRAAMGWCKSGKCGHFGSGGFIIWDISDGQEDYSFGELLPMTVIGVIGGLLGALFNQLTLYITYWRRNHLHKKGNRVKIIEACLISVLTSIISFGLPLLRQCTPCPKPDPELGNECPRPPGTYGNYVNFYCSKDNEYNDLATIFFNTQDDAIRNLFSAKTMHEFSARSLLTFLVMFYTLAVVTFGTAVPAGQFVPGIMIGSTYGRLVGKFVVSFYKKPNIEEGTYALLGAASFLGGSMRMTVSLCVIMVEISNNLKFLPLIMLVLLMSKAVGDAFNEGLYEEQAQLRGIPLLESRPKYQMRKITAKEACGKRVVSFPRVVKVADVVSILRSNRHNGFPVIDYSRNGETRVIGLMLRSYLLGLLQSKVDFQHSPVPSDPRGSISSRHNFSEFVKPASSKGISIDDINLSSEDLEMYIDLLPYLNPSPYIVPEDMSLTKVYNLFRQLGLRHAFVVPRPSNVVGLITRKDLLIEDSEDSDAMELQSTSVRARRPDRRVHTRNGDVESPLLNGLLDNSTDG | 797 |
Gff information
| Chromosome | Start | End | Strand | Old_gene | Gene | Num |
|---|---|---|---|---|---|---|
| 6 | 6682195 | 6689319 | + | CcPI632755_06g006130.1 | Cco06g0613 | 181213 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Cco06g0613 | 797 | Gene3D | - | 574 | 756 | IPR046342 | - | |
| Cco06g0613 | 797 | Pfam | CBS domain | 703 | 750 | IPR000644 | - | |
| Cco06g0613 | 797 | PRINTS | Plant CLC chloride channel signature | 272 | 282 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Plant CLC chloride channel signature | 420 | 436 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Plant CLC chloride channel signature | 48 | 56 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Plant CLC chloride channel signature | 258 | 266 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Plant CLC chloride channel signature | 290 | 297 | IPR002251 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro) | |
| Cco06g0613 | 797 | ProSiteProfiles | CBS domain profile. | 702 | 758 | IPR000644 | - | |
| Cco06g0613 | 797 | CDD | CBS_pair_voltage-gated_CLC_euk_bac | 593 | 749 | - | - | |
| Cco06g0613 | 797 | MobiDBLite | consensus disorder prediction | 766 | 780 | - | - | |
| Cco06g0613 | 797 | FunFam | Chloride channel ClC3 | 66 | 383 | - | - | |
| Cco06g0613 | 797 | Gene3D | Clc chloride channel | 69 | 573 | - | - | |
| Cco06g0613 | 797 | FunFam | Chloride channel protein | 660 | 751 | - | - | |
| Cco06g0613 | 797 | ProSiteProfiles | CBS domain profile. | 589 | 649 | IPR000644 | - | |
| Cco06g0613 | 797 | PANTHER | CHLORIDE CHANNEL PROTEIN CLC FAMILY MEMBER | 26 | 759 | IPR051280 | GO:0015108(PANTHER)|GO:0043231(PANTHER) | |
| Cco06g0613 | 797 | CDD | ClC_6_like | 43 | 572 | - | - | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 468 | 488 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 559 | 573 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 237 | 256 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 503 | 519 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 142 | 159 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 521 | 540 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | PRINTS | Chloride channel signature | 173 | 192 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | Pfam | Voltage gated chloride channel | 130 | 552 | IPR001807 | GO:0005247(InterPro)|GO:0006821(InterPro)|GO:0016020(InterPro)|GO:0055085(InterPro) | |
| Cco06g0613 | 797 | SUPERFAMILY | Clc chloride channel | 52 | 574 | IPR014743 | - | |
| Cco06g0613 | 797 | SMART | cbs_1 | 592 | 644 | IPR000644 | - | |
| Cco06g0613 | 797 | SMART | cbs_1 | 705 | 753 | IPR000644 | - | |
| Cco06g0613 | 797 | MobiDBLite | consensus disorder prediction | 759 | 797 | - | - | |
| Cco06g0613 | 797 | SUPERFAMILY | CBS-domain pair | 577 | 749 | IPR046342 | - |
Duplication type information
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| Cco06g0613 | Cco-Chr6:6682195 | Cco10g0698 | Cco-Chr10:9695242 | 1.70E-184 | dispersed |
Pathway information
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Cco06g0613 | K05016 | - | csv:101215989 | 1528.07 |