Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0617 ATGGGTTCTCGGAAATTCCGCGACCGTGACTCAGAGTTTCCTTCCCGGTCTTTAGTGGAAGCAGGGCCGTGGGATGAGGACGATCGGACGGTGAAAACACGGCGCGCTGATCGACACGGAGGGGCCTGTTTAGTTCGGTGCCAGCTCGGCGTCGAATCAAACTGGTTTAGGTCTTCGGGTATAGTTGATTCGGTGGAAGGGGAGAAGAATCGCATCGTATCTGATATGGATAGGAACAGAGAAGCTAGAAGGACGACGACGAACATGGCGGCCTCTAACGGGCTCTCTAGACGGAGATACAGGAGTGGTAGTCTTCGTGACTCTCCAGAGGATGATGGACCACTGGAGTTACAGGATACCGTGAGATTGAGAGATCGAGGCAGCGGGAAGAAAGATCGTGATCGAGATAGGGATAGAGACAGAGATCGAGACCGTGATAGAGATCGGCTTAGCAGGAGCAAGAGGAGAAGAGCTGATAGATTGATTCATGGCGGTAGCAATAGGGAAGATGGAGGGGAAGATAGTTCTGAAGAGAGTGTAAACGACGAAGAGGATGAGGAAGACGATGATGGTGGTGGTGGTGGTGGTGGTGGGGGTGGAGCATCCGTCAGAATGCTTCCGCCGAATCCGGCGGGGATTTTGAACCATCGGAAGAGTTATCCACCGGCGAAGAGTTTTAGAGCAGCACCGTCATGGAAAGCCGCCGATGAAATGATTGGTGTGTCGGTGCCGAGAAAAGCCCGGTCAGCCTCGACTAAGCGGTCTCATGAATGTTGGCCAGCAGCGGCGGGAAGCGGAATGGTCACTGAAGCCATTCACCGGCAGGCTTCAACATCGCCAGTGAGGCCAAGTCTTACACCAATGGTGACGCTTCAGCCCCCAGCCTCGCCTTCTTCTTCCAATGCTTCGGTGAGGAAGAAGCTGAAGCAAACTGGACCTAAACTCCGACCGCTCAAATCCTCCTCAAAGCCATCATCCATGGCTCAAGACGAGATCGAGATCGAGATTGCTGAAGTATTGTACGGTATGATGAGACAACCTCAAGCTCCTCCCAAACAAGAACCTTCTACTACTGATTCGATGAAGTTCGATCCGAAATCAACCACTGATGCGAAATCCAGAGTTTCTTCGCCGATTTCCAACTCTTCTTCTGCTTTGCCTACCCCTTCCACTTTGCCTCAAAATTCCAGTTCTTCTGTCACTCCGATATCAGCCACCGCACCCAAGAGGAAAAGACCGCGTCCTGTGAAGTATGACGATGAGAACGCCGCTACTTTCAGCCTTCGGAATAGTCCCATTTCGTCAACAGCCAAACCGGAGGCCGATCAACCCACAAACGCCGAGATCCCTTCATCAAATGTGGAAAAAGTTGCAGGATCTGCAGTTGAAAATGGTGGAGTTTCAAACGAATCTGGTAATTCTCAGGCCTTACCACCAACTTCAGAGTCCCATCCAGAATCTATGAAGGTGGAAACAGCCAGTGCCATGTCCAATTCTAAGCCATTGACTGAAGAATCAGAAGGTAAAGATTTGGGTACAAGCAAGGAAGAACCCCAATCTCCCTTGAAGGAATCAAATGGCCCTAGATTGGAAGATAAGCGAGAGGATATGACAGCGACTAAATCAAATTCATCAACCTTCGATGTTGAGAACCAGCGGGATGATAAGTACAAGATAGATCTGATGGCTCCTCCACCATTACGAGCTTCTCCAGAAAGAGATGGTGAGATTGATTTTGTGGCCGTAGATGCTAAACCTATGGTCATAGATGCAGACTCGGAAATGAAGCCTCTGATAAAGGAAGAAGACAAAGGAGCAATCAGACTTGGGTCTAAAGAGGTGGTGAATGTGGAGTCCAAAGTTATACCAGCTGAAGAAGCTGATTCAAAGAAACCCATTGTTTGCAAAGATAATAGAAATATTGACCTTCAGCTTGATTTAGAGAAGACGACTGATAGAGATGGTGCCACTGCGAATGTAGGTGCCAACAAGCTCCACCAGCATGTTCCGAAACAGCCGCTGCAACCTGGCTCGGAAAAGCCTGGATCTGCCGTACAAGCGAGCTCTCTTCCTTTGCCCATGTCTTTACCTGGCTGGCCAAGTGGGCTGCCTCCTATGGGATATGTGGCACCACTACCAGGAGTTGTGTCTGTTGATGGAAGCGCCTTGCCTACTGCTGCTATGCAGCCGCCAAATTTGCTTTTTCCTCAACCCCGGCCAAAGAGATGTGCTACACATTTCTACGTTGCTCGGAATATTTTGTATCACCAGCAAATTGCGCGGATGAATCCGTTTTGGCCAGCAGCAGCAGGTTCTGCTTCCTTGTTTGGGCCCAAGCATGGTACTCACAGCATTGTGCCCTCTGCAGATTTGCAAGGAAGTCTTCCAAAAAGTGGGATAAATGCAATGCAGGATAAGGGCCAGGGCCTTGGAATGTTCTCGGGTCATTCCGGAAAGGATAGGGGCTCTCAAGCTGTTAATGCTGTGGATGCCTCTCAGAGAAAGCAAATTTTGCTTCAGCAAGCTCTGCCCCCGGGAGCACCTAGTAATATCCTGCATGGCCCTGCTTTCCTTCTGCCACTGAGTCAGCAACAGGCAGCTGTAGCTACTTCTGTTCGGCCTGTTTCTGTAAAGTCTCCTCCTCCTAGTGGGAATGCCAACGGCAGTGTGGCTTCAAATGCTTCTAATCCTGCGTCTGTTAGTACCTCAGCTGCTGCAGCAATTGCTGCACCAGCAATGAGTTTCAACTATTCGGGTGTGCCTGGCAATGAACCACAGTATTTAGCCATTTTGCAGAACAATGGATATACATACCCAATTCCAGCACATGTTGGGGCACCGCCTGCATATAGAGGAACCCACGCTCATTCGATGCCTTTTTTCAACGGGTCGTTTTATTCTTCACAAATGCTTCATCCTTCGCAGCTTCAGCAGCAACCGCCACCTCAGTCTCATCCTAATCAACAGGGACTTCAAAATGCTAATACTGCGAATGGTTCCTCATCTTCTCAGAAGAATGTATCTAATCAGCAGCAGAGGCCACATGGGAGCAGTGTCAGTGGGAACTTTCAAGGGTTTCCTGCATCCAGAAATCAGCCATCTCAATCACAGCAGCCACAGCAGCAGCAGAACCATGGTTCTCATCAAACAAGGCAACTTGAGTCTGAGATTGGTGGTGAAGATAGCCCGTCGACTGCTGATAGTCGAGTGAATCTTGCTAATCTGAGTGTCTATGGTCCGAATTTTCCGATGCCAGTGCATACTCCTAATTTTGCTTTGATGACTCCTGCATCAATGGCGGCCGCAGGTGGGGCACCTAATGACAAGAAACAGCAGCCCCAACAACAGTCACAGGGTTCAAAGAGTCTGGAACAATCTCAAACTATTCCTTTGTCTTTTGCTCCTCCCAACGGGGCGCCCTCTGCTCCTGGACTTGACCTTTCATCCATATCACCAAATCATCCTATTTTCCAAAGTCTTCCTGAGATCACCAGGCAAGGGTATCATCAGATTATGGCTGCTGCCGCTGCCGCTCAGGTTGCTCAGCAGAAAAAGAATTATCGTGTAGCCGAAGAAGGAAAAACCACACACTCATCTGTTGGAGAGGATGAGAGAAAAAACATGTCTGTGAAAGCTCCTCCAACTGTTGGTCAGTCCATTGCTTTCTCTAGATCTGATTTAGCCGAGACATCACTTTCTACAATACCAGCTGGGGCCGCTGTTGTTGACAGCTCTGCTAGAACTCTAAACCTTGGTTCTACTGCTAGAGCTTCAGGTTCCGTTATGCCCTCTGGGATGGGCACTGTAAACATGTGTACTTCTCAGCATCCACTGCAGCGAAATCAGCAGCAGCAACAACAGATAATGCTTCAAAAGCAACAGCAATATGCAGCTGCAGCTGCAGCAGCAAGGACCAAAACATCAACAAGTAATGGCAGTGTTTATGCTGAGCACCCTCCTGTGTCGATGGCAGCAAAGTTTCCTAATGCATTGTCTTCTTTTTCTCAAAATCTTGTCCAAAGTAACAGCAATAGTCCTGCTCAATCTCCTCAATGGAAAAATTCTGTAAGAACCACCTCTTCTCAGGTTCAAACCCCCCCTCTGTCTTCATCAAATACATCATCTATCAAAAATCTTCCCCAACAGCCCCGGCCACAGCCAAACCACTCTCAGATTTCTTTTGCAGCTAGCTCAAAATCTACAACTCAATCGCAAGGGCAGCAACCTGCAAGCAGTAATCAGTCTCCATCACCTGGAATGATTGGTTCACCAACTAATTCTTCAATCTCAAAGGGTGCTGGTGGAAGCCCGCGAACTGCTACCTCCGGTTCTATGGGCCACAAAGTTGGTCAATCATCTTCCTTATCTTTGCAGCAGACAAAGAATCCTTCATCTATGCCCCCCCAGAAGTCATCTCCTGTTGGTGGGAGGAATGTTACATCAATTCTTGGCAATAATCAAATAACATCAAGTTCTGGAAATAAATTATCCCAACAGTCGCAGCAACAGCAACAGCAACATTTGGCGAAGCAAACATTGCAGCAAGCACAGTTACTCTTCCCTTACATGCAGCAAGTTTCCCATTCAAGTAGCACTGCAACTGTTTCACCTTCAAGTGGTTATTATCTTCCAAGGCGACGTCCTGAGCAGCAATCACAATCGCAGGGCTCAGGTGGAACATCCTCCAATGGAATGGTATCCCTATGCCACCCTGTTACACTTGGAGGCAGCAGCACTACCGATCCTGCAAAAGCTGTTGCTGCTGCTGCTGCCGCGGCTAACAATTCAAAAGGTGGTGGCTTACCTACACAAGCCATTCTCCATCCTGCTCAGTTTACTGCTGCACAGTCGTCCGGTAATCCTCATCAACTTGTACCTGCAGGTTTTCCTTACGTGCATACTGCTGCAGTGCAAGTGAAATCGACAGAGCAAAAACAACCTGCGGGTGGGTAG 4953 48.76 MGSRKFRDRDSEFPSRSLVEAGPWDEDDRTVKTRRADRHGGACLVRCQLGVESNWFRSSGIVDSVEGEKNRIVSDMDRNREARRTTTNMAASNGLSRRRYRSGSLRDSPEDDGPLELQDTVRLRDRGSGKKDRDRDRDRDRDRDRDRDRLSRSKRRRADRLIHGGSNREDGGEDSSEESVNDEEDEEDDDGGGGGGGGGGASVRMLPPNPAGILNHRKSYPPAKSFRAAPSWKAADEMIGVSVPRKARSASTKRSHECWPAAAGSGMVTEAIHRQASTSPVRPSLTPMVTLQPPASPSSSNASVRKKLKQTGPKLRPLKSSSKPSSMAQDEIEIEIAEVLYGMMRQPQAPPKQEPSTTDSMKFDPKSTTDAKSRVSSPISNSSSALPTPSTLPQNSSSSVTPISATAPKRKRPRPVKYDDENAATFSLRNSPISSTAKPEADQPTNAEIPSSNVEKVAGSAVENGGVSNESGNSQALPPTSESHPESMKVETASAMSNSKPLTEESEGKDLGTSKEEPQSPLKESNGPRLEDKREDMTATKSNSSTFDVENQRDDKYKIDLMAPPPLRASPERDGEIDFVAVDAKPMVIDADSEMKPLIKEEDKGAIRLGSKEVVNVESKVIPAEEADSKKPIVCKDNRNIDLQLDLEKTTDRDGATANVGANKLHQHVPKQPLQPGSEKPGSAVQASSLPLPMSLPGWPSGLPPMGYVAPLPGVVSVDGSALPTAAMQPPNLLFPQPRPKRCATHFYVARNILYHQQIARMNPFWPAAAGSASLFGPKHGTHSIVPSADLQGSLPKSGINAMQDKGQGLGMFSGHSGKDRGSQAVNAVDASQRKQILLQQALPPGAPSNILHGPAFLLPLSQQQAAVATSVRPVSVKSPPPSGNANGSVASNASNPASVSTSAAAAIAAPAMSFNYSGVPGNEPQYLAILQNNGYTYPIPAHVGAPPAYRGTHAHSMPFFNGSFYSSQMLHPSQLQQQPPPQSHPNQQGLQNANTANGSSSSQKNVSNQQQRPHGSSVSGNFQGFPASRNQPSQSQQPQQQQNHGSHQTRQLESEIGGEDSPSTADSRVNLANLSVYGPNFPMPVHTPNFALMTPASMAAAGGAPNDKKQQPQQQSQGSKSLEQSQTIPLSFAPPNGAPSAPGLDLSSISPNHPIFQSLPEITRQGYHQIMAAAAAAQVAQQKKNYRVAEEGKTTHSSVGEDERKNMSVKAPPTVGQSIAFSRSDLAETSLSTIPAGAAVVDSSARTLNLGSTARASGSVMPSGMGTVNMCTSQHPLQRNQQQQQQIMLQKQQQYAAAAAAARTKTSTSNGSVYAEHPPVSMAAKFPNALSSFSQNLVQSNSNSPAQSPQWKNSVRTTSSQVQTPPLSSSNTSSIKNLPQQPRPQPNHSQISFAASSKSTTQSQGQQPASSNQSPSPGMIGSPTNSSISKGAGGSPRTATSGSMGHKVGQSSSLSLQQTKNPSSMPPQKSSPVGGRNVTSILGNNQITSSSGNKLSQQSQQQQQQHLAKQTLQQAQLLFPYMQQVSHSSSTATVSPSSGYYLPRRRPEQQSQSQGSGGTSSNGMVSLCHPVTLGGSSTTDPAKAVAAAAAAANNSKGGGLPTQAILHPAQFTAAQSSGNPHQLVPAGFPYVHTAAVQVKSTEQKQPAGG 1650
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6736794 6744074 + CcPI632755_06g006170.1 Cco06g0617 181217

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1530 1580 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1100 1150 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 464 502 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 76 231 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 503 517 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 100 174 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1 39 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 971 1067 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 655 689 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1108 1134 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 424 453 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 175 192 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 274 556 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 872 897 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1338 1508 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1192 1209 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 85 99 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 350 405 - -
Cco06g0617 1650 PANTHER PROTEIN TIME FOR COFFEE 76 1647 IPR039317 GO:0005634(PANTHER)|GO:0042752(PANTHER)|GO:0042752(InterPro)
Cco06g0617 1650 MobiDBLite consensus disorder prediction 1192 1212 - -
Cco06g0617 1650 MobiDBLite consensus disorder prediction 274 307 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0617 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0617 Cco-Chr6:6736794 Cco09g0675 Cco-Chr9:6036631 1.10E-89 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g474 Blo01g00128 Blo12g00324 . Bda08g00233 Bpe04g00837 . Bma04g00791 Bma05g01112 Cmo08g01126 Cmo17g00232 . . . . . . . . . . . . . . Cla06g00571 Cam06g0610 Cec06g0611 Cco06g0617 Clacu06g0597 . Cre06g1358 Cone14ag0842 . . . . . . . . . . . Bpe05g00906 . . . . . . Cma08g01150 Cma17g00246 Car08g01031 Car17g00220 Cpe12g00204 Cpe17g00142 Bhi12g01725 . . Lac12g2296 . . . . . . . . . . Lsi09g01331 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0003917 1 4 2 2 2 1 2 1 1 1 1 1 2 1 1 2 1 2 2 1 1 1 1 1 1 1 1 4 2 1 45