Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0626 ATGATATCGCTAGCATCCATCTATGACATGGAAAAGAAAGAACACCGGCAAGTAATGTACAGAGGGTTCATATCGGAGCTGTTCGTGCCGTACATGGATTTAAACGAAGAATGGTACTACCGGACGTTTTTCGACGCCGGCGAGTACGGCTTCGGCCAATGTGCAGTGCCGTTACAGCCGCTGAGAGACTGCCCGGAAAATGCAGTGTTTATGGACACGTACATGGCCGCCGGAGATGGCAGGCCGGTGAAGATGCCCAACACTTTTTGTATATTTGAGCGCCACGCCGGTGATATCATGTGGCGCCACACGGAGGGCACCATTCCCAATACACTTATTAGTGAGACGAGAGCGGAAGTGAGCTTAGTGGTGAGGATGGTGGCAGCTGTGGGCAATTATGACTACATTGTAGACTGGGAATTTAAGCAGAGTGGCTCCATTATTGCTAATGTTGGGTTAACTGGTTTGCTAGAAGTTAGGGCATCAAAGTACACTCACAATGACCAAATAAAGGAGGAAGTCTACGGCCCTTTGTTAGCCGACAATACGATCGGCGTCCGCCATGATCACTTCCTCGTCTACCATCTCGATCTCGACATCGACGGCGGCGCCAACTCCTTCGTCAAATCCAACCTCCGCACTGCCCGATCGCCGGACCCGGATTCCCCTAGGCGTAGCTATTGGACGGTCGTCGCCGAGACGGCCAAAACAGAGGCCGATGCGAGGATCAAATTCGGCCTCCAGGAGGCCGAATTGGCAGTCGTTAATCCCAATCGGAGGACCAGAATGGGGAATCCCGTCGGCTACCGTCTGATTCCGAAGTCGGCGGCGGGTCCTCTTTTGAGTGCTGATGATTACCCCCAAATTAGGGGAGCGTTCTCCAATTACAATGTGTGGGTTACACCGTATAATAGCTCCGAGAAATGGGCTTCTGGACTCTTCACTGATCAGAGCCGTGGAGACGATACCTTGGCTACTTGGAGTCTCAGGGACAGGGAGATAGAGAACAAGGACATAGTCATGTGGTACACCATGGGGTTTCATCATGTGCCTTGCCAAGAAGACTTCCCATTAATGCCAACTCTGAGCAGTGGGTTTGAGCTAAGACCAACCAATTTCTTTGAGAGCAATCCTGTGCTTAAAGTCACCCCACCCCAGTGGACAGTCCTTCACCTTCATTTCTGTACGGCGGCGCTGCCCTTTTTCCATCCGCTTGACCCTCTAAACCCGGTGGAGCTTGACCAAATTAGGCTCGCAGTACAGAAATCCCACCTTGGAAAGCTTCCAAATCTCACATTTCACTTCGTTGACTTGGAAGAACCAGATAAGAAGGATGTTCTTTCCTGGCTTTCTTCCGGTGAAGAAAACAAACCCCTCCACCGCCTGCCCCGCCATGCCAAGGTTGTGGTCCGGGCGGCGGATTCCACCCACGAGCTACTTGTAGACCTTGCCACACGCTCGGTTAAGTCTGACCAAGTCTATAGTGGCCATGGCTATCCTCCTCTCACTTTTGTGGAGCTTGTCCAAGCCAGCAAATTGCCTCTCAATTTCCCCAAATTCAAGGATTCCATTCAGAGGAGAGGCTTGAACTTGTCTCATGTTTCTTGCATCCCGTTTACAGTAGGCTGGTACGGCGAAAAAACAACCAAAAGGCTTCTAAAAGTTGCGTGCTTTTACAGAGAAGGAACCATCAATGTGTTCTCCAGGCCAATCGAAGGAATCATCACACTCATCGACGTTGATTCCATGAAAATCAACAACTACTCCGACAGATTCACCGCCCCTTTGCCGCAATCAGAAGGCACCGATTACCAATCAAAGAAAACAGAGCCCAAATCTTCCAATTGCAAGGCGGCGAAAAGAAGATTTACCATCGAAGGCCATCAAGTGAAATGGGAAAACTGGGTCTTCCATGTGGGATTCAACGCCAGAGCCGGAATTATTATCTCGACAGCCTCCATTTTCGACGATGAAAAGAAGAAATTCAGACGAGTGCTTTACAGAGGACACATTTCAGAGACGTTTGTGCCGTATATGGATCCGACGAACGAATGGTACTTCAGAACCTTTATGGACATCGGAGAGTTTGGATTTGGGCGGGCGGCGGACACTCTGCAGCCGCTGGTTGACTGTCCGGAAACTGCCGAGTATCTAGACGGCTACATGGCCGGCGCCGACGGGGGAGCGCAGAAAGTATCGAGAGCCATTTGTATCTTTGAACGCCATTCAGGAGATGTTTTATGGAGGCATACCGAGATTAATATTCCTGGAAAAGTGATTAGACGCGGGGAACCTGAGATTAGTTTGGTGGTTAGGATGGTGGCAACTGTTGGGAATTATGATTATGTTCTTGACTGGGAATTCAAAAGAAGTGGCTCTATTAAAATGGGGGTTGCTTTAACAGGGCTTTTGGAGGTTAAAGCCACACCGTACAGAAATACCATGGATGTAACCCAACAAACATACGGAACTTTAATCGCCGACAACACAATCGCCGTCAACCACGACCACTACCTAACCTACTACCTCGACCTCGACGTTGACGGCACCGCCAACTCCTTTGTCAAAGCCAAGCTGATAACGGCAACAACGACGAACGCCAACGCCACGTCACCCAGGAAAAGTTACTGGAAAATTATCCGAGAAACCATTGAAACCGAAACTGAAGCTAAACTTCAGCTCGGCTCCGGCCCAGCTGAGCTCTTGTTCGTAAACCCCAATAAGAAGACAAAGATTGGGAATCCGGTTGGTTACCGGCTCATCACCGGCCAACCGGTTAATTCTTTATTGCCCGACGATGATTACCCGCAGATCAGAGCGGCTTACACCAAGTACCCGTTGTGGGTGACTCCTTATAACAAGTCGGAGAGATGGCCGGCCGGATTTTACGCCGATCGGAGCCGTGGTGATGATGGCTTAGCCGTCTGGGCCAAAAGGAATAGAAGAATTGATAATAGAGATATAGTTTTATGGTACACGGTGGGTTTCCATCACAGCCCTTGCCAGGAAGAATTCCCGGCAATGGCCGCCCTCCACGGCGGCTTCGAGCTCCGACCAGCCAATTATTTTGATAGAAACCCTATCCTTAAATGA 3093 49.98 MISLASIYDMEKKEHRQVMYRGFISELFVPYMDLNEEWYYRTFFDAGEYGFGQCAVPLQPLRDCPENAVFMDTYMAAGDGRPVKMPNTFCIFERHAGDIMWRHTEGTIPNTLISETRAEVSLVVRMVAAVGNYDYIVDWEFKQSGSIIANVGLTGLLEVRASKYTHNDQIKEEVYGPLLADNTIGVRHDHFLVYHLDLDIDGGANSFVKSNLRTARSPDPDSPRRSYWTVVAETAKTEADARIKFGLQEAELAVVNPNRRTRMGNPVGYRLIPKSAAGPLLSADDYPQIRGAFSNYNVWVTPYNSSEKWASGLFTDQSRGDDTLATWSLRDREIENKDIVMWYTMGFHHVPCQEDFPLMPTLSSGFELRPTNFFESNPVLKVTPPQWTVLHLHFCTAALPFFHPLDPLNPVELDQIRLAVQKSHLGKLPNLTFHFVDLEEPDKKDVLSWLSSGEENKPLHRLPRHAKVVVRAADSTHELLVDLATRSVKSDQVYSGHGYPPLTFVELVQASKLPLNFPKFKDSIQRRGLNLSHVSCIPFTVGWYGEKTTKRLLKVACFYREGTINVFSRPIEGIITLIDVDSMKINNYSDRFTAPLPQSEGTDYQSKKTEPKSSNCKAAKRRFTIEGHQVKWENWVFHVGFNARAGIIISTASIFDDEKKKFRRVLYRGHISETFVPYMDPTNEWYFRTFMDIGEFGFGRAADTLQPLVDCPETAEYLDGYMAGADGGAQKVSRAICIFERHSGDVLWRHTEINIPGKVIRRGEPEISLVVRMVATVGNYDYVLDWEFKRSGSIKMGVALTGLLEVKATPYRNTMDVTQQTYGTLIADNTIAVNHDHYLTYYLDLDVDGTANSFVKAKLITATTTNANATSPRKSYWKIIRETIETETEAKLQLGSGPAELLFVNPNKKTKIGNPVGYRLITGQPVNSLLPDDDYPQIRAAYTKYPLWVTPYNKSERWPAGFYADRSRGDDGLAVWAKRNRRIDNRDIVLWYTVGFHHSPCQEEFPAMAALHGGFELRPANYFDRNPILK 1030
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6894321 6903139 - CcPI632755_06g006260.1 Cco06g0626 181226

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0626 1030 ProSitePatterns Copper amine oxidase topaquinone signature. 769 782 IPR049948 -
Cco06g0626 1030 Gene3D - 402 500 - -
Cco06g0626 1030 Pfam Copper amine oxidase, N2 domain 403 492 IPR015800 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 Gene3D Copper amine oxidase, catalytic domain 623 1030 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 Gene3D Copper amine oxidase, catalytic domain 1 389 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 Pfam Copper amine oxidase, N3 domain 500 592 IPR015802 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 FunFam Amine oxidase 1 390 - -
Cco06g0626 1030 SUPERFAMILY Amine oxidase catalytic domain 620 1029 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 PANTHER COPPER AMINE OXIDASE 402 1030 IPR000269 GO:0005507(InterPro)|GO:0005507(PANTHER)|GO:0008131(PANTHER)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0009308(PANTHER)|GO:0048038(InterPro)
Cco06g0626 1030 FunFam Amine oxidase 401 500 - -
Cco06g0626 1030 Pfam Copper amine oxidase, enzyme domain 621 1028 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 Pfam Copper amine oxidase, enzyme domain 6 380 IPR015798 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 ProSitePatterns Copper amine oxidase copper-binding site signature. 344 357 IPR049947 -
Cco06g0626 1030 SUPERFAMILY Amine oxidase catalytic domain 2 386 IPR036460 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 SUPERFAMILY Amine oxidase N-terminal region 498 604 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 SUPERFAMILY Amine oxidase N-terminal region 401 497 IPR016182 GO:0005507(InterPro)|GO:0008131(InterPro)|GO:0009308(InterPro)|GO:0048038(InterPro)
Cco06g0626 1030 FunFam Amine oxidase 501 594 - -
Cco06g0626 1030 FunFam Amine oxidase 623 1030 - -
Cco06g0626 1030 Gene3D - 502 594 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0626 K00276 - - csv:101222232 1194.1
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0623 Cco-Chr6:6850907 Cco06g0626 Cco-Chr6:6894321 8.40E-193 dispersed
Cco06g0625 Cco-Chr6:6883857 Cco06g0626 Cco-Chr6:6894321 4.10E-195 tandem
Cco06g0626 Cco-Chr6:6894321 Cco06g0627 Cco-Chr6:6927766 4.00E-48 tandem
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g485 . Blo12g00327 . . . . . . . . . . . . . . . . . . . . . . Cla06g00580 Cam06g0618 Cec06g0620 Cco06g0626 Clacu06g0605 Cmu06g0598 Cre06g1366 . . . . . . . . . . . . . . . . . . . . . . . . . Bhi12g01714 . . Lac12g2284 Hepe03g0193 . Lcy13g0278 . . . . . . . Lsi09g01324 . . .
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0000717 1 5 2 3 1 3 2 4 3 4 3 3 3 3 5 4 3 1 2 3 4 3 4 4 5 4 2 7 2 4 97