Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0628 ATGAATGGTTCTTCAACAACAAATTCTGAACCAGACATCTCTGAATATGTTGAAGTTGATCCTACCGGAAGATATGGAAGATACAATGAAGTTCTTGGCAAAGGAGCATCGAAGACAGTTTACAGAGCTTTTGATGAATACGATGGCATTGAAGTGGCGTGGAATCAAGTGAAGCTTTGTGATTTTCTTCAAACTCCTGAAGATCTTGAAAGGCTGTACAGAGAAATCCATTTGTTGAAGACACTAAAACACAAAAACATAATGAAATTTTATTCTTCTTGGGTTGACACTGCAAATAGAAACATTAACTTTGTAACAGAGATGTTCACTTCTGGGACTCTCAGACAATATAGGCTGAAGCATAAGAGAGTGAATATCAGAGCTGTGAAGCATTGGTGTAGACAGATTTTAAAAGGGCTTCTCTATCTTCACAGCCATGACCCTCCTGTGATCCACAGAGACCTTAAATGTGATAATATTTTTGTAAATGGGAATCAAGGGGAAGTCAAAATTGGTGATCTTGGCCTTGCTGCTATTCTTCGTAAATCCTATGTAGCTCGATGTGTTGGAACACCAGAGTTTATGGCTCCAGAGATTTATGAAGAGGAGTATAATGAATTGGTTGATATATATTCTTTTGGAATGTGTATTTTAGAGATGGTCACTTTTGAATATCCATACAGTGAATGCACTCACCCTGCTCAGATTTACAAGAAAGTTATCTCTGGGAAGAAACCAGATGCTCTGTATAAGGTAAAGGATCTCGAGGTTCGATGTTTCGTCGAGAAATGTTTGGCTACTGTGTCAACTAGGCTGTCTGCTAGGGAGCTTTTGAATGACCCTTTTCTTCAAATTGATGGTTGTGATTCTTTACTGAGGCCAATAGAGTACTATTCAGAATATGATGAAGTGAACAATTCCCTTATTAGAGGAGGGCCTTTTTATGGAATTCCTCATGGTTCTTTGGATAATGGGTATGTGAATTATTTTGGTCATGAGGCTGGGAATGGTTTGGATTACCGTCCGATTGATAACGAAGCGAATGAAATGGATCTTTTCTCCTGTCAAGAGGATGAGCATTTGGCAGATGTTGATATCACTATTAAAGGGAGAAGAAGAGGTGACGATGATATCTTTCTTCGACTTCGGATTGCAGATAAAGAAGGTCGAATTCGAAACATCTACTTTCCCTTCGATTTAGAGAATGATAGTACTTTGAGTGTTGCAAATGAGATGGTTTCTGAGCTTGACATTACCGATCAAGATGTGAAGAAGATTGCTGATATGATAGATGGTGAAATTGCTACATTGGTGCCAGAGTGGAAGAGGGGAAAAAGTTCAGAGGAAACTCCAAATTGCACTGATTCTAGTGTTTGTCACAATTGTGCTTTAAACAGTTCTCTTTTGGATTATGTATCGCCGAATAATCCCGCGACGAAGAACTTGCACATTCTTCAGTGTTCTCAAGAGCATGGCTGTGCTTCTATCCATGGACGTTTTGAAGAGATTACATACCAAGTTGAGGGGTCAGAACAATTCAATGGAGACGAAAACTTGCATAGAACAACGGAGAATTCAAACGATATCCATTACACCGATATTTGGGCGCAACGAGATGGACCAGATGCAGTTTCTCAAGAATCTTTAGAAACTTGCAATGAATCTGGAACATTGGAACAGCCGAAACTCGAGAAGGAAGAAAGTAATGTAAATATGGACAATGATCGTCAAATGGAATTCCAAACAAGAAACTCTAGCTCATCAAATCCTTCACTGTCCTTTGTCAACGATCACGAGAACGAAATTCGACAAGAACTAAGATGGCTCAAGGCTAAATATCAAATGCAGTTGAGGGAGCTAAGGGATCAACAGTTAGGAATCAAGACCAAATCTCTTAGCTTGCATCCGAATCCCAACCTTGTGGAGACCGACAATGGAGCTTCGGTATCTTTGCTTTCGCCAAACTTCAATGAAGCAGCAAAAAGTAAGCCTGCCCTAACATCTCTCTCCGTTAGCAAGAATATCACTTCACATTCCTTCTATACTGCTGTTGATAACATTATGGAAAACCAAACCTTCCAAGACGACAAAGTCGTTGTCGACGAGCCGAGTAGTCCCGAGCTGATGGTTGCTGCCAAGAGTTTCTATAGAGGAGCATTGTTTCCACATTCTCTTCAAAGAGCAACCTCACTTCCTGTTGATGCTATAGACTTTTAG 2217 39.96 MNGSSTTNSEPDISEYVEVDPTGRYGRYNEVLGKGASKTVYRAFDEYDGIEVAWNQVKLCDFLQTPEDLERLYREIHLLKTLKHKNIMKFYSSWVDTANRNINFVTEMFTSGTLRQYRLKHKRVNIRAVKHWCRQILKGLLYLHSHDPPVIHRDLKCDNIFVNGNQGEVKIGDLGLAAILRKSYVARCVGTPEFMAPEIYEEEYNELVDIYSFGMCILEMVTFEYPYSECTHPAQIYKKVISGKKPDALYKVKDLEVRCFVEKCLATVSTRLSARELLNDPFLQIDGCDSLLRPIEYYSEYDEVNNSLIRGGPFYGIPHGSLDNGYVNYFGHEAGNGLDYRPIDNEANEMDLFSCQEDEHLADVDITIKGRRRGDDDIFLRLRIADKEGRIRNIYFPFDLENDSTLSVANEMVSELDITDQDVKKIADMIDGEIATLVPEWKRGKSSEETPNCTDSSVCHNCALNSSLLDYVSPNNPATKNLHILQCSQEHGCASIHGRFEEITYQVEGSEQFNGDENLHRTTENSNDIHYTDIWAQRDGPDAVSQESLETCNESGTLEQPKLEKEESNVNMDNDRQMEFQTRNSSSSNPSLSFVNDHENEIRQELRWLKAKYQMQLRELRDQQLGIKTKSLSLHPNPNLVETDNGASVSLLSPNFNEAAKSKPALTSLSVSKNITSHSFYTAVDNIMENQTFQDDKVVVDEPSSPELMVAAKSFYRGALFPHSLQRATSLPVDAIDF 738
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6951084 6953873 + CcPI632755_06g006280.1 Cco06g0628 181228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0628 738 SMART serkin_6 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0628 738 Gene3D - 377 466 - -
Cco06g0628 738 CDD STKc_WNK 24 283 - -
Cco06g0628 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 150 162 IPR008271 GO:0004672(InterPro)|GO:0006468(InterPro)
Cco06g0628 738 Gene3D Transferase(Phosphotransferase) domain 1 109 288 - -
Cco06g0628 738 FunFam Probable serine/threonine-protein kinase WNK1 11 107 - -
Cco06g0628 738 PANTHER SERINE/THREONINE-PROTEIN KINASE WNK WITH NO LYSINE -RELATED 14 624 IPR050588 GO:0004674(PANTHER)|GO:0005737(PANTHER)|GO:0006468(PANTHER)|GO:0035556(PANTHER)
Cco06g0628 738 Pfam Oxidative-stress-responsive kinase 1 C-terminal domain 379 434 IPR024678 GO:0004674(InterPro)|GO:0005524(InterPro)
Cco06g0628 738 ProSiteProfiles Protein kinase domain profile. 26 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
Cco06g0628 738 FunFam probable serine/threonine-protein kinase WNK9 109 288 - -
Cco06g0628 738 Coils Coil 603 623 - -
Cco06g0628 738 Gene3D Phosphorylase Kinase; domain 1 11 107 - -
Cco06g0628 738 SUPERFAMILY Protein kinase-like (PK-like) 29 284 IPR011009 -
Cco06g0628 738 Pfam Protein kinase domain 29 283 IPR000719 GO:0004672(InterPro)|GO:0005524(InterPro)|GO:0006468(InterPro)
       

Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco05g0080 Cco-Chr5:706460 Cco06g0628 Cco-Chr6:6951084 5.90E-127 dispersed
Cco06g0628 Cco-Chr6:6951084 Cco06g1045 Cco-Chr6:14725954 4.70E-184 dispersed
Cco02g2037 Cco-Chr2:33377409 Cco06g0628 Cco-Chr6:6951084 1.70E-134 transposed
Cco03g0316 Cco-Chr3:3523355 Cco06g0628 Cco-Chr6:6951084 3.20E-141 transposed
Cco04g0819 Cco-Chr4:23539503 Cco06g0628 Cco-Chr6:6951084 5.00E-120 transposed
Cco02g1766 Cco-Chr2:30431794 Cco06g0628 Cco-Chr6:6951084 9.30E-225 wgd
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
86911 PF00069 Pkinase 5.60E-49 CL0016 Cco PK
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0628 K08867 - csv:101210511 1361.67