Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0629 ATGGAGGACGGTGTGAGATCTGGGGGTCCGTCGGGGGTTTTGGTGAAGACTAGGAACTCGTCTGGTTGCTTAATTGTTAGAAAAAAAGAGGATGGATTAGGAGGCGCCGGTTCTTCGGGCTCACGCTTGCTTAATGCAAAGAAAGAGAAGAAGAGGCCTAGGTTGGTTTTGAGTGATTCTGGGTCCAGTGATGAGGTATTGTTGCCTCATCGTAGACGGGTTGGTCCTGAAACCATTCGGGTTTGTAATGGTTTGAATTCTTTTGGGAAGGATGTTGCGGATGAGACTGGAAGTATCAGAAAGAAGGATAGGTTGCAGTATGTTAAGCGGAATGATGATGGTTTAATCAACAGGATGGATGTGGATGGTTTACGAAGAAATATGGACACCTTAGATGTCTTTGAGTTCAACGAATATGATGAAATTGATGGCGAGACTTTTCGGAGGAAGCATTTTAATGACAGTGGAGAAAGACGGTTTGTTGGTTCCATGAAACTGCCTCAAATGGGCGTTGAGAGGGAATTTGGAACCACTTCTAGCAGGCATGCTTTGGTGGACAAGAGAAAGAATTTGTATGCTGAACAAACCAATAGCTTTGATCGGGACAGGCCTCCCAGAAAGATTAACTATGACTCAGATAATGACGGACCTCAACTCCCAACACCCTTGTTGAGAGATAAGTTTAGGGGTCATTCCGATGAAGCAATCAGGGTTCAGGGAAAAAATGGAGTTTTAAAGGTCATGGTAAACAAGAAGAAAAATGTGAGTGGTGCTTCCGATATGTATGATCATCGCAAATTAGAAGAAAGTAGAAAGAGTCTAAGGACTGAAGATACTCTGAAGAGGAAAGTGTTAGTTTCTTCTTCACTTCACCCAGAAACTAAGCCCAATGTGAAAGAGGATCTCTTTTCTAAGCCAGAGAAAGACCATACAGATTTTCAAACTTCAGCATCAACAAAAAATGTAAAGGGTTGCAGTTGGGATTCAGGGGACAGTAGTGTGTCATTGAAGCCCAGAAAAAAGGTTGTTGAAGCTCACAAATCCACCAAGAAGGCAAGTTGTGAAGTTGATAAAATTCCATGTGAAGAAACTCCCCCAAGTACAGCAAAAGAAGGAAAAGTAAAACGAGGCAGTGGAACAGAGAAACAAAAGCTACGTGAAAGGATCAGGGGAATGCTCCTTAGTGCTGGCTGGAAAATCGATTACAGACCCAGAAGGAATAGAGATTATTTAGATGCTGTCTATGTTAATCCCACTGGAACAGCTTATTGGTCAATTATTAAGGCTTATGATGCCCTTCAAAAGCAATTAAACGAAGAAGGAGCAGAGGCTAAACCTAGTGCTGATGGTTCATTTACACCAATATCAGATGATATTCTTAGTCAATTAACCAGGAAAACTAGAAAGAAAATTGAGAAAGAATGGAAAAATAAGCGGAGAGATGATAGTGACAGTGAAAATGCTAAAGAAGCAAGCGCACTAAGATCTGCTGGTACCAAAAATGACATGGACAGCATGGACAGTGACAGCAACGAAGAAAAGTTAAGTTCTTTCATAAAGCAGGGTGGAAAATCTTTTAAAAATAAATTGACCGAGAATGGTTTTCCCAGTGTCAACTCCAAAGGTCAAAGTTCTAGTAAGTATGCGCGTGATACCATTGTAAAATCTTCTTCTGGATCCAATTCACGTATTTTACATGGAAGAAGAGGTAGAAAGCTTGGATTGTTAGTTCGTGGCTCTAGTAGGGGATTAGATTCAGAGAATGATGGATATGTTCCATATACTGGTAAAAGGACTCTGCTTTCATGGCTTATCGATTCTGGAACGGTGCAGTTGAGCCAAAAGGTCCGGTACATGAACCGCAGACAGACCCGGGTGATGCTGGAGGGGTGGATTACCAGAGATGGCATCCATTGCGGTTGCTGTAGCAAAATCCTAACTGTCTCCAAGTTTGAGATACATGCTGGAAGCAAATTACGCCAACCTTTTCAAAACATCTTTTTGGAGTCTGGGGTTTCTCTTCTGCAGTGCCAGAGAGATGCATGGAATAGACAGGAGGAGTCGAAACGCCTCAGTTTCCACACGGTTGAAATTGACGGTGATGATCCGAATGATGACACATGTGGCATCTGCGGAGATGGTGGAGACTTGATCTGTTGTGATGGGTGTCCATCAACTTTTCATCAGAGTTGTTTAGATATTCAGATTCCTCCAGGTGATTGGCACTGCCCAAATTGTACTTGCAAGTATTGTGGAGTTGCCAGTGTTGATATTTCTCAGGGAGACAATACCGTTGTTCCTGAGATATCTACTTGCATGTTATGCGAGAAAAAATTTCATGAGTCCTGCAATCTTGAGATGGATACTCCTGTTCATTCCAATGCTTCAGTCACTTCTTTTTGTGGCAAGAATTGCAGAGAGCTTTTTGAGAGTTTGCAGAAGCATCTTGGGGTGAAACATGAATTAGATGCAGGATTCTCGTGGTCTCTTATCCGTAGAACAAATGAAGATTCGGATGTATCTGTTCGTGGACTTTCTCAAAGGATCGAATGCAACTCTAAACTGGCTGTTGCATTAACAGTTATGGATGAATGCTTTTTGCCTATTGTTGACAGGAGGAGTGGGATAAATCTAATTCATAATGTTCTTTATAACTGTGGATCAAACTTTTATAGGCTAAATTATAGTGGCTTCTACACTGCTATTTTGGAAAAGGGTGATGAAATCATCTCTGCAGCAACAATTAGGTTTCATGGGACTAAGTTAGCTGAAATGCCATTCATTGGTACACGCCATATTTATAGACGTCAAGGAATGTGCCGTCGGCTTTTTTGCGCAATTGAATCTGCTCTCCGCGTGCTTAAGGTTGAGAAACTGATTATACCAGCAATCGCTGAGCTCATGCACACTTGGAGTGTGATTTTTGGCTTTAGTCCTCTGGAGCAATCACTCAAGCAAGAAATGAGACTGATGAATATGCTGGTGTTCCCTGGAACAGATATGTTACAGAAGCTGTTAATCCAAGAGACATTTGTCGAGGAGAATACTTCTACTGGCTCAGGTGCAAAGCAAACGGATTGTAGAAGTACAGAGTTAAGTAGTCCTAAGATGGATACAGAGACCTCATCTGGCCATGAACCTCAAAGTTGTGATGACACTGAACAGCATCACTCCAAAGAGAAAAGAAATGAAGCAGCTGTCACTAAACCAAATCCTGCATCCGTGTCTGTTTCTCTAAATGATACTTCTGCGGCAAATAGTCCTCTGGATGCATTTTGTGAAGTTAAAAAGTCATGTTCTCCAATGCAAACTGTAAACTCGGATTGGGATTCTGGTGATAAAGTTATATGTTCATCTCGATCTGATTCACCCGACTCTCTTCAACGCAACATTAAGCCAGGAACTCAGCATGATATAGAGGACCATGTGCAGGTCACTTCCCAATGTATGGAAGCTGATACATCTTCAGACGGATTTCTGGAACCTAAGGTTAAAGTTTCAGATGAAGGAATCATTTGTTCCAATTCTCATGCTGGGCATGAGTTGGCTGACTCCGGTTCTGAGAAGAAATCTTTTCCTCCTGCAATAGGCAATGGCACCGATGAGTTTGTAAATGACATTCGCGTAGTGGATTCTCCTGAAGATGATAAGTCATTCAATAAGATTAATGGTCATGAATTTTGTGAAGACGATGTCCATGCTAATGCTCTTAAACCTGCTCAGTCGGTTGAGAATCCACTTCTCTCTAATGCTAGTTTATGTGGCACTAATGGACACCCCTATGAAACTACATCTGATTGCAAAAATGCAAGACCTTATGGGAAAGGAACTGTTTCTGATGGAATTTTTGACAGTGAAAATTCTCCACATTTCTATGGGGCAAAAACCAGAGGTGATTCACAGAAAGAGAAAGCTGAATCTGCCCTGGAGTTAACAGAGGTGCCCTTGAAGGAAGTAGGCATGGTTCAATTCACCCTTTCTCTTCTGAAATTGCTGCTTTCGAACATGAACCCTTTCATTATGCTGGGTGGTTTGGAAGCTCAGACTTCACGGTCGATGATTCGATTCTCTGTCGAAGACGACTCCGACGACAACTTACTGGTGGAGGAAGCCGGAAAAACCCAAGAGACTTGTATCAAAGGAGAAGAAATGATGGGGAAGAGATCAGAAAGTGCAAAGTATGAAGCAAAGGCATTAGAGTTAAAAGAAAATGAGTTTTCAAAGATGACAAGATGGATTTTTTTCTTTTGA 4251 41.8 MEDGVRSGGPSGVLVKTRNSSGCLIVRKKEDGLGGAGSSGSRLLNAKKEKKRPRLVLSDSGSSDEVLLPHRRRVGPETIRVCNGLNSFGKDVADETGSIRKKDRLQYVKRNDDGLINRMDVDGLRRNMDTLDVFEFNEYDEIDGETFRRKHFNDSGERRFVGSMKLPQMGVEREFGTTSSRHALVDKRKNLYAEQTNSFDRDRPPRKINYDSDNDGPQLPTPLLRDKFRGHSDEAIRVQGKNGVLKVMVNKKKNVSGASDMYDHRKLEESRKSLRTEDTLKRKVLVSSSLHPETKPNVKEDLFSKPEKDHTDFQTSASTKNVKGCSWDSGDSSVSLKPRKKVVEAHKSTKKASCEVDKIPCEETPPSTAKEGKVKRGSGTEKQKLRERIRGMLLSAGWKIDYRPRRNRDYLDAVYVNPTGTAYWSIIKAYDALQKQLNEEGAEAKPSADGSFTPISDDILSQLTRKTRKKIEKEWKNKRRDDSDSENAKEASALRSAGTKNDMDSMDSDSNEEKLSSFIKQGGKSFKNKLTENGFPSVNSKGQSSSKYARDTIVKSSSGSNSRILHGRRGRKLGLLVRGSSRGLDSENDGYVPYTGKRTLLSWLIDSGTVQLSQKVRYMNRRQTRVMLEGWITRDGIHCGCCSKILTVSKFEIHAGSKLRQPFQNIFLESGVSLLQCQRDAWNRQEESKRLSFHTVEIDGDDPNDDTCGICGDGGDLICCDGCPSTFHQSCLDIQIPPGDWHCPNCTCKYCGVASVDISQGDNTVVPEISTCMLCEKKFHESCNLEMDTPVHSNASVTSFCGKNCRELFESLQKHLGVKHELDAGFSWSLIRRTNEDSDVSVRGLSQRIECNSKLAVALTVMDECFLPIVDRRSGINLIHNVLYNCGSNFYRLNYSGFYTAILEKGDEIISAATIRFHGTKLAEMPFIGTRHIYRRQGMCRRLFCAIESALRVLKVEKLIIPAIAELMHTWSVIFGFSPLEQSLKQEMRLMNMLVFPGTDMLQKLLIQETFVEENTSTGSGAKQTDCRSTELSSPKMDTETSSGHEPQSCDDTEQHHSKEKRNEAAVTKPNPASVSVSLNDTSAANSPLDAFCEVKKSCSPMQTVNSDWDSGDKVICSSRSDSPDSLQRNIKPGTQHDIEDHVQVTSQCMEADTSSDGFLEPKVKVSDEGIICSNSHAGHELADSGSEKKSFPPAIGNGTDEFVNDIRVVDSPEDDKSFNKINGHEFCEDDVHANALKPAQSVENPLLSNASLCGTNGHPYETTSDCKNARPYGKGTVSDGIFDSENSPHFYGAKTRGDSQKEKAESALELTEVPLKEVGMVQFTLSLLKLLLSNMNPFIMLGGLEAQTSRSMIRFSVEDDSDDNLLVEEAGKTQETCIKGEEMMGKRSESAKYEAKALELKENEFSKMTRWIFFF 1416
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 6957720 6973917 + CcPI632755_06g006290.1 Cco06g0629 181229

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0629 1416 MobiDBLite consensus disorder prediction 490 504 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 1045 1066 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 192 220 - -
Cco06g0629 1416 Pfam Domain of unknown function (DUF7028) 369 436 IPR054292 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 472 489 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 368 382 - -
Cco06g0629 1416 Pfam Tify domain binding domain 630 680 IPR032308 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 192 210 - -
Cco06g0629 1416 ProSitePatterns Zinc finger PHD-type signature. 708 746 IPR019786 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 28 61 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 1179 1198 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 44 58 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 515 564 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 315 330 - -
Cco06g0629 1416 Pfam PHD-finger 708 746 IPR019787 -
Cco06g0629 1416 CDD PHD2_CHD_II 708 746 - -
Cco06g0629 1416 SMART PHD_3 707 747 IPR001965 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 1017 1044 - -
Cco06g0629 1416 ProSiteProfiles Zinc finger PHD-type profile. 705 749 IPR019787 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 472 565 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 308 330 - -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 363 382 - -
Cco06g0629 1416 SUPERFAMILY FYVE/PHD zinc finger 696 752 IPR011011 -
Cco06g0629 1416 PANTHER PHD FINGER PROTEIN 12 309 1114 - GO:0005634(PANTHER)|GO:0006357(PANTHER)|GO:0140110(PANTHER)
Cco06g0629 1416 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 695 808 IPR013083 -
Cco06g0629 1416 MobiDBLite consensus disorder prediction 1017 1081 - -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0629 - - - - 0.0
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0629 Cco-Chr6:6957720 Cco11g1813 Cco-Chr11:30789880 8.60E-110 dispersed
Cco02g2082 Cco-Chr2:33733859 Cco06g0629 Cco-Chr6:6957720 1.10E-86 transposed
Cco05g2320 Cco-Chr5:31793650 Cco06g0629 Cco-Chr6:6957720 1.20E-66 transposed
Cco04g2357 Cco-Chr4:37034183 Cco06g0629 Cco-Chr6:6957720 8.20E-09 transposed
Cco06g0629 Cco-Chr6:6957720 Cco09g0684 Cco-Chr9:6108259 2.20E-174 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g496 . . . Bda08g00235 Bpe04g00832 . Bma04g00785 . Cmo08g01120 Cmo17g00223 . . . . . . . . . . . . . . Cla06g00583 Cam06g0621 Cec06g0623 Cco06g0629 Clacu06g0608 Cmu06g0601 Cre06g1369 Cone14ag0851 . . . . . . . . . . . Bpe05g00903 . . . Sed09g1123 . . Cma08g01143 Cma17g00236 Car08g01026 Car17g00215 Cpe12g00199 Cpe17g00147 Bhi12g01710 Tan06g0978 Cmetu01g0849 Lac12g2278 Hepe03g0198 . Lcy13g0282 . . . . . . . Lsi09g01321 . . Cme01g01562
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0006686 1 1 2 1 2 1 2 1 1 1 1 1 2 1 1 3 1 2 2 1 1 1 1 1 1 1 1 1 1 1 38
       

Regulatory proteins

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59473 PF16135 TDBD 4.40E-22 No_clan Cco TR