Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0643 ATGGAATGTGTTTTCGGCTTAGTCGGTAATGGTTTCGCCATTGTTGCCGCTGATTCTTCGGCGGTTCACAGCATCTTGGTCCATAAATCCGACGAGGACAAGATTATGGTCCTCGACTCTCACAAGCTCGTCGCTGCTAGCGGCGAGCCTGGTGACAGGGTTCAGTTCACCGAGTACATCCAGAAGAATGTGGCGTTGTATCAGTTCCGGAATGGGATCCCATTGACAACTGCTGCTGCTGCTAATTTTACTCGGGGCGAACTCGCCACTGCATTGAGAAAGAATCCATACTCTGTTAATATCCTCTTGGCTGGCTATGATAAGGAGACTGGCCCATCACTTTACTACATCGATTACATTGCAACGCTTCACAAGGTTGAGAAAGGTGCTTTTGGTTACGGATCCTACTTTTCACTCTCTATGATGGATAGGCATTACCACAGCGGCATGTCAGTCGAGGAAGCAATCGACTTGGTCGATAAGTGCATCGTCGAGATTCGTTCAAGGCTGGTAGTGGCTCCACCAAACTTTGTGATCAAGATTGTTGACAAGGATGGGGCAAGAGAGGTTGCATGGCGTCAATCCATTAAAGATACTGGAGCTCTTCCAATAAAAATGGGAATACTTGGAATTGGGTCTCTACACCCTTGGTTTTTGAGCTTTGATCAAAATTTCCTCTTGACAATGGGCACAGTAGGTGATAATTGGGGAGACGATTGTTCTGTCATTAAAGACAAAGGAGAGATTTCCTATATTGACTACGAAGATGATAAATCTGTTTGCAGTTATAATCCTATTGAGGAAGGTCCAGTTATTGTTTCAGTGCCATTTGCTTTTGTGAACGGCAAACCTCAATCAGTTTTCATTGGAGAAACAGCGGTTGATGCCATTACCATCAAGAACACCACCGATGAATCAGTGGACCTATGGGCTGTTAATATTTATGCATCTAATCCTGAAAACTCGTTTACGCTCTCTCTAATGGAGCCCCCAGCTCCAAATGCTGACATAGAAAGTGTACAAGCTTTCTTGGAGTCTTTTTCGTTGGAGGATAGAATGATCCATCCGGATGAGTCTCTTACTATATGGCTGTCTTGCAAACCAAAGGAAATTGGTTTGCACACAACAGTTGTGCATTTTGATCTTGGCAATGAAAGAATAGAACGAGTGTCTTTTCTTTTAGCAGATGATAAGATTTCACAGTCGTTGGCTTCTAGGAAGCCATATTCAAGAGATAGGAGAAGGAGGCATGAGGCAGTAGATATGTATATTCCTGGCTCACGTCCTACTAGAACACAAGGTCGGGGATTCAAAAATTTCCTTCTCCAATATGAAATCCCTGGTAGAATTAGAGATGAACTTAGCAGAAAGGAGATCCCTAGTGCTGTTCGAGAAGGACTTAAAAGAGATACCTACATTCCCTATTTCATGACATTGTTGAACATGGAAGAAATACAATTGGAGGAAGACATGAGAGCTTATGATATGGAGCGTGTTACTATGAGAAGAAAGGGACATAACTTTTTGTCCCTTGAGGTTCCGGGGCTCGCTGAGAGAAGGCCTTCACTTGTCCATGGAGACTATATCCTTGCCAAGATGCCTTTTGGACATACAAATGACTGGGTTCCTACTTATCAGGGGTATATTCATCACGTTGAAGCTGATGAAGTTTTCCTAAAATTTGATCCAGAATTTCACATTAACCACAGAGATGACAATCTGTATAATGTCCAGTTTACCTACAACAGAATTAACATGAGAAGGTTCTATCAGGCTGTTGATGCTGCAGAAAGTTTAGCAAAGGAGTTTCTGTTCCCATACGAGTTTTCAGAAAGAAGATACATCAAGACTACTCCACTGGTGCCTATAACTCAAAACATCAATGAGGAACAGATGCGTTGTGTTCAGATGATCCTTGGTTGCAGAGGTGCGCCACCTTATTTAGTTCATGGACCTCCTGGTACTGGTAAGACTCAAACTTTGGTGGAAGCTATCCTCCAACTCTACACAACACAAAAGAATGCTCGGATACTTGTTTGCGCTCCTTCAAATAGTGCTGCAGACCACATACTGGAGAAGCTTCTCAGTCAGGAGAGTGTTGAAATTCGTGATAATGATGTTTTCAGGCTAAATGCAAGCACACGACAATATGAGGAAATCAAGCCTGACCACCTTCGTTACTGCTTCTTTGATGAACACATTTTCAGGTGTCCTCCACGCAATGCCCTAGTCCACTATAGGATTGTCGTTTCAACTTATATGAGTACTTCCCTTCTTTATGCTGAGGATATCAAGCGTGGTCACTTCTCTCACATTTTCTTGGATGAGGCTGGCCAAGCTTCAGAACCAGAATCCATAATTCCAGTATCCAACCTCTGTCTAAGGAGAACAGTTGTCGTTCTTGCTGGTGATCCCATGCAATTAGGTCCAGTGATTTACTCCAAGGAAGCAGAAATTTATGGATTGGGTAAATCATATTTGGAAAGGCTTTTTGAATGTGAATATTACAGCACTGGGGATGAAAACTATGTAATAAAGTTGTTAAGAAACTATAGATGTCATCCAGATATCTTGCATCTTCCTTCTACATTGTTCTATGGTGGGGAACTAATTGCATGTAAAGATGAGAGAAGTCTCCTCACGGATACAGCAGATATTCTTCAAGTACTTCCTACTAAAGAGTTTCCTGTTCTTTTCTTTGGAATCCAAGGTTGTGATGAGCGGGAAGGCAACAATCCATCATGGTTTAACCGAATTGAGGTAAGCAAGGTGGTTGAGATTATAAGGAAACTGACTGATAGTGGAAATCTGAGTGAGGAAAATATCGGGGTCATAACGCCGTATCGACAACAAGTGCTCAAAATAAGGAAAGCCCTTGATAGCCTGGATATGCTTGATATAAAGGTTGGTAGTGTAGAACAATTTCAAGGACAAGAGAGGCAAGTGATTATTGTTTCTACTGTTCGATCAACAATCAAACACAATGAGTTTGACAGAACCTACTGTTTGGGGTTTTTGAGTAATCCAAGAAGGTTTAATGTGGCTGTTACCCGGGCTATATCTCTTCTGGTCATAATTGGCAACCCCCATATAATCAATCAGGATATGTGTTGGAACAAGCTGTTATGGCAGTGTGTTGACAAAGATTCATATCAAGGTTGTCCCCTTCCTGACCCCACAGACAAGGAACAACCCTGCAATAACGAAGAGGGACAAAGTTCAGGATTTGAAGCAGGCCAGAATCCAGAGCAGCCGGAGCCAGCACTGGCACCGGAAACGGAATTTTCTGAACCCGTTGTTGATGAAGCTGAATGGTCTGATGGGTGGAATGCGAAACTAGAAATTTTCCTGTTCGGGATCGATGAAGAAGTCTCTTTATTAGTCAGGGCGATGATCAAGTAA 3402 42.62 MECVFGLVGNGFAIVAADSSAVHSILVHKSDEDKIMVLDSHKLVAASGEPGDRVQFTEYIQKNVALYQFRNGIPLTTAAAANFTRGELATALRKNPYSVNILLAGYDKETGPSLYYIDYIATLHKVEKGAFGYGSYFSLSMMDRHYHSGMSVEEAIDLVDKCIVEIRSRLVVAPPNFVIKIVDKDGAREVAWRQSIKDTGALPIKMGILGIGSLHPWFLSFDQNFLLTMGTVGDNWGDDCSVIKDKGEISYIDYEDDKSVCSYNPIEEGPVIVSVPFAFVNGKPQSVFIGETAVDAITIKNTTDESVDLWAVNIYASNPENSFTLSLMEPPAPNADIESVQAFLESFSLEDRMIHPDESLTIWLSCKPKEIGLHTTVVHFDLGNERIERVSFLLADDKISQSLASRKPYSRDRRRRHEAVDMYIPGSRPTRTQGRGFKNFLLQYEIPGRIRDELSRKEIPSAVREGLKRDTYIPYFMTLLNMEEIQLEEDMRAYDMERVTMRRKGHNFLSLEVPGLAERRPSLVHGDYILAKMPFGHTNDWVPTYQGYIHHVEADEVFLKFDPEFHINHRDDNLYNVQFTYNRINMRRFYQAVDAAESLAKEFLFPYEFSERRYIKTTPLVPITQNINEEQMRCVQMILGCRGAPPYLVHGPPGTGKTQTLVEAILQLYTTQKNARILVCAPSNSAADHILEKLLSQESVEIRDNDVFRLNASTRQYEEIKPDHLRYCFFDEHIFRCPPRNALVHYRIVVSTYMSTSLLYAEDIKRGHFSHIFLDEAGQASEPESIIPVSNLCLRRTVVVLAGDPMQLGPVIYSKEAEIYGLGKSYLERLFECEYYSTGDENYVIKLLRNYRCHPDILHLPSTLFYGGELIACKDERSLLTDTADILQVLPTKEFPVLFFGIQGCDEREGNNPSWFNRIEVSKVVEIIRKLTDSGNLSEENIGVITPYRQQVLKIRKALDSLDMLDIKVGSVEQFQGQERQVIIVSTVRSTIKHNEFDRTYCLGFLSNPRRFNVAVTRAISLLVIIGNPHIINQDMCWNKLLWQCVDKDSYQGCPLPDPTDKEQPCNNEEGQSSGFEAGQNPEQPEPALAPETEFSEPVVDEAEWSDGWNAKLEIFLFGIDEEVSLLVRAMIK 1133
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7107338 7115316 - CcPI632755_06g006430.1 Cco06g0643 181243

Annotation

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0643 1133 CDD SF1_C_Upf1 853 1045 IPR047187 -
Cco06g0643 1133 MobiDBLite consensus disorder prediction 1056 1096 - -
Cco06g0643 1133 Pfam Proteasome subunit 3 182 IPR001353 GO:0005839(InterPro)|GO:0051603(InterPro)
Cco06g0643 1133 Pfam Helicase MOV-10, beta-barrel domain 494 579 IPR049080 -
Cco06g0643 1133 Gene3D - 851 1054 IPR027417 -
Cco06g0643 1133 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 1 190 IPR029055 -
Cco06g0643 1133 PANTHER DNA2/NAM7 HELICASE FAMILY 384 1102 IPR045055 GO:0005829(PANTHER)|GO:0035194(PANTHER)|GO:0043186(PANTHER)
Cco06g0643 1133 FunFam Proteasome subunit beta type-4 1 196 - -
Cco06g0643 1133 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 1 192 IPR029055 -
Cco06g0643 1133 FunFam Probable RNA helicase SDE3 852 1054 - -
Cco06g0643 1133 CDD DEXXQc_Helz-like 628 852 IPR026122 GO:0003723(InterPro)|GO:0032574(InterPro)
Cco06g0643 1133 ProSitePatterns Proteasome beta-type subunits signature. 5 52 IPR016050 GO:0005839(InterPro)|GO:0051603(InterPro)
Cco06g0643 1133 FunFam Probable RNA helicase SDE3 576 721 - -
Cco06g0643 1133 Pfam AAA domain 627 726 IPR041677 GO:0004386(InterPro)
Cco06g0643 1133 Pfam AAA domain 741 815 IPR041677 GO:0004386(InterPro)
Cco06g0643 1133 Pfam AAA domain 823 1029 IPR041679 -
Cco06g0643 1133 Gene3D - 544 838 IPR027417 -
Cco06g0643 1133 ProSiteProfiles Proteasome beta-type subunit profile. 1 182 IPR023333 -
Cco06g0643 1133 MobiDBLite consensus disorder prediction 1066 1080 - -
Cco06g0643 1133 CDD proteasome_beta_type_2 1 192 IPR035206 GO:0010498(InterPro)
Cco06g0643 1133 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 623 1040 IPR027417 -
       

Pathway

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0643 K18422 - - csv:101209925 1634.39
       

Dupl-types

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
Cco06g0643 Cco-Chr6:7107338 Cco10g0202 Cco-Chr10:2043539 3.60E-42 dispersed
Cco05g0586 Cco-Chr5:4807336 Cco06g0643 Cco-Chr6:7107338 9.70E-104 wgd
       

Deco-Alignment

Select Vvi1 Blo1 Blo2 Bda1 Bda2 Bpe1 Bpe2 Bma1 Bma2 Cmo1 Cmo2 Cma1 Cma2 Car1 Car2 Sed1 Cpe1 Cpe2 Bhi1 Tan1 Cmetu1 Lac1 Hepe1 Mch1 Lcy1 Cla1 Cam1 Cec1 Cco1 Clacu1 Cmu1 Cre1 Cone1 Cone2 Cone3 Cone4 Lsi1 Csa1 Chy1 Cme1 Blo3 Blo4 Bda3 Bda4 Bpe3 Bpe4 Bma3 Bma4 Sed2 Cmo3 Cmo4 Cma3 Cma4 Car3 Car4 Cpe3 Cpe4 Bhi2 Tan2 Cmetu2 Lac2 Hepe2 Mch2 Lcy2 Cla2 Cam2 Cec2 Cco2 Clacu2 Cmu2 Cre2 Lsi2 Csa2 Chy2 Cme2
Vvi5g530 . Blo12g00334 Bda03g00877 . Bpe04g00822 . Bma04g00775 . Cmo08g01110 . . . . . . . . . . . . . . . Cla06g00598 Cam06g0637 Cec06g0640 Cco06g0643 Clacu06g0623 Cmu06g0616 Cre06g1384 Cone14ag0862 . . . . . . . . . . . . . . . . . . Cma08g01136 . Car08g01018 . . Cpe17g00154 . . . . . . . . . . . . . . Lsi09g01306 . . Cme01g01579
       

Syn-Orthogroups

Select Orthogroup Bda Bhi Blo Bma Bpe Cam Car Cco Cec Chy Cla Clacu Cma Cme Cmetu Cmo Cmu Cone Cpe Cre Csa HCH Hepe Lac Lcy Lsi Mch Sed Tan Vvi Total
OG0009068 1 2 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 4 1 34