Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cco06g0656 ATGAGTGCCGGCACGGCGACGTTCCGGTCTATACTCGACAAACCCCTCAACCAGTTGACGGAGGATGACATTTCGCAGCTCACTCGAGAGGATTGTCGCAAATACCTAAAAGAAAAAGGAATGCGACGGCCCTCATGGAACAAATCTCAGGCGATCCAGCAGGTTATTTCTCTCAAAGCATTGCTTGAACCTTGTGATGATTCCGGCGCCGGTGCTCTCAGGAAGGTCGTCGTTTCGCCTCGGGTGAATTCAAATCAAGGCGATTCACCCAAAGAACCGAGTGATGATGCTCAGGTTACAATGTCAGTTGATGAATCTGCTTATAGCAATGTGGAGACTGCAAAATCTACTCCTGAGGATCCACCGATTGAACCAGACAACTATGTCACTAGTCCCAGAGATCCATATGATACGAATGGAGTGGATGGCCAAATGACAATTTTCTATTGTGGCAAGGTGAATGTCTATGATGGAGTTCCGCCAGATAAGGCATGGGCAATCATGCATCTTGCAGCTAGTCCAATTCATTTCCCTCAGAATCATCCCTTGGGTGGAACTGCTGTATGTCAGTCTCCACCATGTCTTCTGCAGACTTCCAGTGACAGAGATGACTTTTTTCCTCCTAGTGCTACCATCTATCGAAATGTGCACACAGAGAAGATGGTTGAACACTCTCAGCAGCAGCAGCAAGCAAAGGGAACCAGTACGCGAGATTCTGATGTTGAGGGTCAGGCGAGTCGGCAAGTTTCATTACAGAGATATCGTGAAAAGCGAAAAGACAGGGGAAGGTTAAAGAACAAGAAAAATACAGGATTGTCTTCTTCTAGCCTGGAGGGATATATGAACCATCCAATGAGGACGCACATATCCAATAAGAATTTAGGTCAGATTGTGACAAGCTCTTTATCTCCAACTGGAGTAGCAAAAGCCTTCGTTGGAACAGCTGACAATCAGCCAAAACTTGCATGTTTTCCTGTCGACCTTAATGTCAAAGATATCCTGGAGTCCTGA 1011 46.29 MSAGTATFRSILDKPLNQLTEDDISQLTREDCRKYLKEKGMRRPSWNKSQAIQQVISLKALLEPCDDSGAGALRKVVVSPRVNSNQGDSPKEPSDDAQVTMSVDESAYSNVETAKSTPEDPPIEPDNYVTSPRDPYDTNGVDGQMTIFYCGKVNVYDGVPPDKAWAIMHLAASPIHFPQNHPLGGTAVCQSPPCLLQTSSDRDDFFPPSATIYRNVHTEKMVEHSQQQQQAKGTSTRDSDVEGQASRQVSLQRYREKRKDRGRLKNKKNTGLSSSSLEGYMNHPMRTHISNKNLGQIVTSSLSPTGVAKAFVGTADNQPKLACFPVDLNVKDILES 336
       

Gff information

Chromosome Start End Strand Old_gene Gene Num
6 7262215 7266866 + CcPI632755_06g006560.1 Cco06g0656 181256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cco06g0656 336 Pfam Jas motif 245 261 IPR018467 -
Cco06g0656 336 ProSiteProfiles Tify domain profile. 138 173 IPR010399 -
Cco06g0656 336 MobiDBLite consensus disorder prediction 220 282 - -
Cco06g0656 336 MobiDBLite consensus disorder prediction 268 282 - -
Cco06g0656 336 PANTHER PROTEIN TIFY 4A-RELATED-RELATED 20 261 IPR040390 GO:0005634(PANTHER)|GO:0009611(PANTHER)|GO:0031347(PANTHER)|GO:2000022(PANTHER)
Cco06g0656 336 SMART tify_2 138 173 IPR010399 -
Cco06g0656 336 MobiDBLite consensus disorder prediction 109 135 - -
Cco06g0656 336 MobiDBLite consensus disorder prediction 222 250 - -
Cco06g0656 336 Pfam tify domain 144 172 IPR010399 -
       

Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
59476 PF06200 tify 3.00E-15 No_clan Cco TF
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cco06g0656 - - - 0.0